Wall clock time and date at job start Tue Mar 31 2020 07:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47033 * 180.83306 * 3 2 1 5 5 N 1.46503 * 109.47107 * 179.97438 * 4 3 2 6 6 C 1.46503 * 119.99747 * 85.00609 * 5 4 3 7 7 C 1.50695 * 109.47313 * 84.99958 * 6 5 4 8 8 C 1.38678 * 120.41675 * 270.25293 * 7 6 5 9 9 C 1.38627 * 118.41930 * 180.24221 * 8 7 6 10 10 C 1.38232 * 119.16085 * 359.75178 * 9 8 7 11 11 N 1.31857 * 120.76541 * 359.97438 * 10 9 8 12 12 C 1.31889 * 121.72235 * 0.02562 * 11 10 9 13 13 S 1.65606 * 120.00116 * 265.00102 * 5 4 3 14 14 O 1.42095 * 106.39918 * 23.54271 * 13 5 4 15 15 O 1.42094 * 106.39965 * 156.45950 * 13 5 4 16 16 C 1.76202 * 107.21732 * 270.00372 * 13 5 4 17 17 H 1.07999 * 120.00096 * 359.97438 * 16 13 5 18 18 C 1.37879 * 119.99461 * 180.02562 * 16 13 5 19 19 N 1.31512 * 120.00069 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99750 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46851 * 89.99472 * 20 18 16 22 22 H 1.48498 * 109.47288 * 209.99721 * 20 18 16 23 23 H 1.48496 * 109.47003 * 329.99941 * 20 18 16 24 24 H 1.09005 * 109.47386 * 60.83948 * 3 2 1 25 25 H 1.08997 * 109.47522 * 300.83904 * 3 2 1 26 26 H 1.09008 * 109.46947 * 60.00726 * 4 3 2 27 27 H 1.08997 * 109.47456 * 300.00639 * 4 3 2 28 28 H 1.09001 * 109.46632 * 324.99767 * 6 5 4 29 29 H 1.08996 * 109.46728 * 204.99761 * 6 5 4 30 30 H 1.07994 * 120.78944 * 359.96926 * 8 7 6 31 31 H 1.07997 * 120.42083 * 179.72800 * 9 8 7 32 32 H 1.07999 * 119.61954 * 180.02562 * 10 9 8 33 33 H 1.08002 * 119.61237 * 179.97438 * 12 11 10 34 34 H 0.97007 * 119.99567 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4433 0.0210 5 7 4.5823 1.4439 0.0216 6 6 5.3154 1.3520 -1.2435 7 6 5.4589 2.7275 -1.8420 8 6 4.4917 3.2227 -2.7037 9 6 4.6680 4.4912 -3.2344 10 6 5.7914 5.2172 -2.8855 11 7 6.6881 4.7164 -2.0585 12 6 6.5530 3.5136 -1.5347 13 16 5.4097 1.5487 1.4523 14 8 4.5279 1.0760 2.4613 15 8 6.6929 0.9861 1.2158 16 6 5.6695 3.2603 1.7804 17 1 5.3030 4.0044 1.0888 18 6 6.3416 3.6495 2.9196 19 7 6.7884 2.7433 3.7615 20 14 6.6177 5.4640 3.2672 21 1 5.4782 5.9955 4.0573 22 1 7.8761 5.6347 4.0369 23 1 6.7181 6.2041 1.9838 24 1 2.9716 -0.4999 -0.8974 25 1 2.9716 -0.5260 0.8823 26 1 2.7538 1.9439 0.9185 27 1 2.7537 1.9699 -0.8613 28 1 4.7685 0.7103 -1.9344 29 1 6.3037 0.9303 -1.0609 30 1 3.6241 2.6324 -2.9587 31 1 3.9371 4.9068 -3.9122 32 1 5.9359 6.2063 -3.2942 33 1 7.3087 3.1368 -0.8613 34 1 7.2609 3.0172 4.5632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509587.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:21 Heat of formation + Delta-G solvation = -28.505217 kcal Electronic energy + Delta-G solvation = -21778.259446 eV Core-core repulsion = 18416.790787 eV Total energy + Delta-G solvation = -3361.468658 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.93929 -37.25347 -35.93997 -35.46715 -34.10744 -33.13684 -32.67125 -31.72308 -30.02892 -26.30584 -26.01466 -23.56563 -23.04809 -21.62426 -18.83584 -17.56630 -17.46524 -16.84919 -16.49020 -16.01783 -15.58251 -15.05706 -15.04600 -14.59316 -14.13178 -13.73565 -13.63278 -13.27768 -13.21817 -12.88446 -12.54610 -12.44604 -12.09030 -11.99637 -11.87213 -11.43643 -11.24324 -11.22014 -10.99510 -10.60972 -10.44241 -10.37824 -10.26785 -9.61595 -9.34006 -9.27567 -9.02707 -8.79210 -8.48141 -6.75232 -5.37428 1.28867 1.49412 2.09415 2.83551 2.87567 3.06092 3.13607 3.22260 3.89361 4.08309 4.08800 4.53424 4.60062 4.68675 4.92856 5.04524 5.08433 5.13794 5.19337 5.22075 5.49006 5.49920 5.66870 5.76682 5.84995 5.95193 5.99740 6.08727 6.23921 6.27574 6.40087 6.58399 6.95056 7.28151 7.31230 7.63637 7.93200 8.25299 8.85739 10.18419 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.010631 B = 0.008547 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.216174 B = 3275.138655 C = 4955.027695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.220 3.780 3 C -0.053 4.053 4 C 0.135 3.865 5 N -1.004 6.004 6 C 0.161 3.839 7 C -0.154 4.154 8 C -0.065 4.065 9 C -0.184 4.184 10 C 0.093 3.907 11 N -0.484 5.484 12 C 0.129 3.871 13 S 2.706 3.294 14 O -0.998 6.998 15 O -0.998 6.998 16 C -1.014 5.014 17 H 0.101 0.899 18 C 0.138 3.862 19 N -0.845 5.845 20 Si 0.913 3.087 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.259 1.259 24 H 0.110 0.890 25 H 0.119 0.881 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.165 0.835 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 0.124 -12.530 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.098 4.098 3 C -0.095 4.095 4 C 0.007 3.993 5 N -0.835 5.835 6 C 0.035 3.965 7 C -0.158 4.158 8 C -0.091 4.091 9 C -0.204 4.204 10 C -0.064 4.064 11 N -0.192 5.192 12 C -0.028 4.028 13 S 2.808 3.192 14 O -0.989 6.989 15 O -0.988 6.988 16 C -1.147 5.147 17 H 0.120 0.880 18 C -0.081 4.081 19 N -0.475 5.475 20 Si 0.737 3.263 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.183 1.183 24 H 0.128 0.872 25 H 0.137 0.863 26 H 0.112 0.888 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.125 0.875 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.166 0.834 33 H 0.182 0.818 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.483 -0.223 -11.640 12.152 hybrid contribution -0.315 1.223 -0.105 1.267 sum -3.798 0.999 -11.744 12.384 Atomic orbital electron populations 1.81189 1.13052 1.08720 1.09611 1.29087 0.95098 0.93027 0.92589 1.19918 0.81471 1.01657 1.06479 1.20918 0.80812 0.93363 1.04240 1.58199 1.12944 1.89956 1.22437 1.20093 0.98988 0.91693 0.85745 1.21427 0.96188 0.99547 0.98657 1.21431 0.97618 0.95279 0.94803 1.22043 0.99751 0.96000 1.02585 1.22743 0.90306 0.99435 0.93946 1.67749 1.29769 1.13201 1.08529 1.22988 0.96350 0.88808 0.94661 1.00869 0.71935 0.76864 0.69580 1.93375 1.67150 1.83238 1.55099 1.93361 1.40517 1.80663 1.84269 1.30500 1.50232 1.17604 1.16411 0.88044 1.24676 0.90012 1.00411 0.92951 1.69879 1.31015 1.35343 1.11232 0.86252 0.78443 0.82136 0.79455 1.19325 1.19909 1.18320 0.87178 0.86279 0.88802 0.90571 0.89885 0.87513 0.85212 0.85354 0.83388 0.81821 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.98 18.54 42.15 0.78 -6.20 16 2 C 0.22 2.89 15.43 -20.76 -0.32 2.56 16 3 C -0.05 -0.60 6.02 -29.52 -0.18 -0.78 16 4 C 0.13 1.84 5.30 -4.04 -0.02 1.82 16 5 N -1.00 -16.55 2.77 -115.66 -0.32 -16.87 16 6 C 0.16 2.18 5.83 -5.19 -0.03 2.15 16 7 C -0.15 -2.20 5.48 -104.48 -0.57 -2.77 16 8 C -0.06 -0.76 9.54 -39.28 -0.37 -1.13 16 9 C -0.18 -2.10 10.11 -39.44 -0.40 -2.50 16 10 C 0.09 1.24 11.18 -17.54 -0.20 1.05 16 11 N -0.48 -8.14 10.36 -13.25 -0.14 -8.27 16 12 C 0.13 2.18 10.86 -17.55 -0.19 1.99 16 13 S 2.71 63.84 4.93 -107.50 -0.53 63.31 16 14 O -1.00 -26.08 16.99 -57.18 -0.97 -27.05 16 15 O -1.00 -25.72 16.57 -57.18 -0.95 -26.67 16 16 C -1.01 -25.89 9.75 30.60 0.30 -25.59 16 17 H 0.10 2.46 7.81 -52.49 -0.41 2.05 16 18 C 0.14 3.67 5.46 -17.82 -0.10 3.57 16 19 N -0.85 -23.71 13.19 55.43 0.73 -22.98 16 20 Si 0.91 20.31 29.54 -169.99 -5.02 15.29 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 23 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 24 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 26 H 0.09 1.45 7.61 -51.92 -0.40 1.05 16 27 H 0.08 0.82 7.66 -51.93 -0.40 0.42 16 28 H 0.08 0.77 8.06 -51.93 -0.42 0.36 16 29 H 0.11 1.55 6.87 -51.93 -0.36 1.19 16 30 H 0.13 1.14 7.94 -52.49 -0.42 0.73 16 31 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 33 H 0.16 2.95 8.06 -52.49 -0.42 2.53 16 34 H 0.29 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -34.45 323.89 -7.26 -41.70 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -3.64 Total: 2.49 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -2.08 Total: -19.63 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 1.06 Total: -54.32 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -1.92 Total: -53.72 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 63.84 SS G_CDS: -0.53 Total: 63.31 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.45 -7.26 -41.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509587.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.199 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds