Wall clock time and date at job start Tue Mar 31 2020 07:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47033 * 180.83306 * 3 2 1 5 5 N 1.46503 * 109.47107 * 179.97438 * 4 3 2 6 6 C 1.46503 * 119.99747 * 85.00609 * 5 4 3 7 7 C 1.50695 * 109.47313 * 84.99958 * 6 5 4 8 8 C 1.38678 * 120.41675 * 270.25293 * 7 6 5 9 9 C 1.38627 * 118.41930 * 180.24221 * 8 7 6 10 10 C 1.38232 * 119.16085 * 359.75178 * 9 8 7 11 11 N 1.31857 * 120.76541 * 359.97438 * 10 9 8 12 12 C 1.31889 * 121.72235 * 0.02562 * 11 10 9 13 13 S 1.65606 * 120.00116 * 265.00102 * 5 4 3 14 14 O 1.42095 * 106.39918 * 23.54271 * 13 5 4 15 15 O 1.42094 * 106.39965 * 156.45950 * 13 5 4 16 16 C 1.76202 * 107.21732 * 270.00372 * 13 5 4 17 17 H 1.07999 * 120.00096 * 359.97438 * 16 13 5 18 18 C 1.37879 * 119.99461 * 180.02562 * 16 13 5 19 19 N 1.31512 * 120.00069 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99750 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46851 * 89.99472 * 20 18 16 22 22 H 1.48498 * 109.47288 * 209.99721 * 20 18 16 23 23 H 1.48496 * 109.47003 * 329.99941 * 20 18 16 24 24 H 1.09005 * 109.47386 * 60.83948 * 3 2 1 25 25 H 1.08997 * 109.47522 * 300.83904 * 3 2 1 26 26 H 1.09008 * 109.46947 * 60.00726 * 4 3 2 27 27 H 1.08997 * 109.47456 * 300.00639 * 4 3 2 28 28 H 1.09001 * 109.46632 * 324.99767 * 6 5 4 29 29 H 1.08996 * 109.46728 * 204.99761 * 6 5 4 30 30 H 1.07994 * 120.78944 * 359.96926 * 8 7 6 31 31 H 1.07997 * 120.42083 * 179.72800 * 9 8 7 32 32 H 1.07999 * 119.61954 * 180.02562 * 10 9 8 33 33 H 1.08002 * 119.61237 * 179.97438 * 12 11 10 34 34 H 0.97007 * 119.99567 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4433 0.0210 5 7 4.5823 1.4439 0.0216 6 6 5.3154 1.3520 -1.2435 7 6 5.4589 2.7275 -1.8420 8 6 4.4917 3.2227 -2.7037 9 6 4.6680 4.4912 -3.2344 10 6 5.7914 5.2172 -2.8855 11 7 6.6881 4.7164 -2.0585 12 6 6.5530 3.5136 -1.5347 13 16 5.4097 1.5487 1.4523 14 8 4.5279 1.0760 2.4613 15 8 6.6929 0.9861 1.2158 16 6 5.6695 3.2603 1.7804 17 1 5.3030 4.0044 1.0888 18 6 6.3416 3.6495 2.9196 19 7 6.7884 2.7433 3.7615 20 14 6.6177 5.4640 3.2672 21 1 5.4782 5.9955 4.0573 22 1 7.8761 5.6347 4.0369 23 1 6.7181 6.2041 1.9838 24 1 2.9716 -0.4999 -0.8974 25 1 2.9716 -0.5260 0.8823 26 1 2.7538 1.9439 0.9185 27 1 2.7537 1.9699 -0.8613 28 1 4.7685 0.7103 -1.9344 29 1 6.3037 0.9303 -1.0609 30 1 3.6241 2.6324 -2.9587 31 1 3.9371 4.9068 -3.9122 32 1 5.9359 6.2063 -3.2942 33 1 7.3087 3.1368 -0.8613 34 1 7.2609 3.0172 4.5632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509587.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:20 Heat of formation + Delta-G solvation = -54.202463 kcal Electronic energy + Delta-G solvation = -21779.373762 eV Core-core repulsion = 18416.790787 eV Total energy + Delta-G solvation = -3362.582974 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.98313 -38.38323 -37.42168 -37.07415 -36.07010 -35.12885 -33.74736 -32.72661 -31.13848 -28.21433 -27.20134 -24.67549 -24.11146 -22.74477 -20.66243 -19.10318 -18.59314 -18.22220 -17.81542 -17.21266 -17.06369 -16.64216 -16.19666 -15.77412 -15.68241 -15.27825 -14.90617 -14.46504 -14.30879 -13.98073 -13.83340 -13.74186 -13.55470 -13.27660 -13.10513 -13.03566 -12.98495 -12.51301 -12.41109 -12.40240 -12.36760 -12.00403 -11.65078 -11.24295 -10.94661 -10.61742 -10.37256 -9.91698 -9.77304 -8.72899 -7.41135 0.13749 0.43470 0.55406 1.28657 1.31549 1.45542 1.78714 1.85941 2.18999 2.60206 2.71745 3.04291 3.28223 3.66819 3.80073 3.97939 4.00920 4.08856 4.20721 4.21501 4.26116 4.42456 4.54191 4.61697 4.77481 4.84868 4.96734 5.01451 5.12381 5.17880 5.32348 5.33489 5.49398 5.90896 5.95108 5.98737 6.62678 6.84897 7.19352 8.21782 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.010631 B = 0.008547 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.216174 B = 3275.138655 C = 4955.027695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.246 3.754 3 C -0.047 4.047 4 C 0.126 3.874 5 N -0.993 5.993 6 C 0.156 3.844 7 C -0.160 4.160 8 C -0.056 4.056 9 C -0.171 4.171 10 C 0.078 3.922 11 N -0.524 5.524 12 C 0.094 3.906 13 S 2.720 3.280 14 O -1.032 7.032 15 O -1.031 7.031 16 C -1.029 5.029 17 H 0.106 0.894 18 C 0.083 3.917 19 N -0.890 5.890 20 Si 0.967 3.033 21 H -0.256 1.256 22 H -0.263 1.263 23 H -0.259 1.259 24 H 0.159 0.841 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.143 0.857 29 H 0.088 0.912 30 H 0.174 0.826 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.130 0.870 34 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.800 0.704 -15.284 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.071 4.071 3 C -0.088 4.088 4 C -0.001 4.001 5 N -0.828 5.828 6 C 0.031 3.969 7 C -0.164 4.164 8 C -0.083 4.083 9 C -0.190 4.190 10 C -0.079 4.079 11 N -0.233 5.233 12 C -0.062 4.062 13 S 2.821 3.179 14 O -1.022 7.022 15 O -1.021 7.021 16 C -1.161 5.161 17 H 0.124 0.876 18 C -0.130 4.130 19 N -0.522 5.522 20 Si 0.788 3.212 21 H -0.181 1.181 22 H -0.187 1.187 23 H -0.183 1.183 24 H 0.176 0.824 25 H 0.125 0.875 26 H 0.087 0.913 27 H 0.136 0.864 28 H 0.161 0.839 29 H 0.106 0.894 30 H 0.192 0.808 31 H 0.187 0.813 32 H 0.189 0.811 33 H 0.147 0.853 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.399 0.356 -14.381 15.365 hybrid contribution 0.253 1.068 0.598 1.250 sum -5.147 1.425 -13.783 14.781 Atomic orbital electron populations 1.81227 1.14422 1.10103 1.11284 1.29231 0.95076 0.91686 0.91141 1.19976 0.80126 1.00381 1.08358 1.21183 0.78578 0.95208 1.05113 1.57534 1.14144 1.89722 1.21401 1.20432 0.98883 0.92565 0.85016 1.21440 0.96090 0.99378 0.99502 1.21912 0.97745 0.95640 0.92979 1.22497 0.99234 0.95504 1.01810 1.23283 0.90588 1.00713 0.93335 1.67633 1.31872 1.13598 1.10187 1.22716 0.97488 0.90043 0.96003 1.00089 0.71391 0.75819 0.70629 1.93322 1.67674 1.83331 1.57879 1.93311 1.42702 1.80806 1.85257 1.30924 1.49498 1.19464 1.16235 0.87578 1.25663 0.89775 1.04610 0.93001 1.69953 1.32633 1.37398 1.12217 0.85440 0.79185 0.77175 0.79448 1.18068 1.18677 1.18286 0.82350 0.87495 0.91294 0.86389 0.83944 0.89356 0.80840 0.81303 0.81064 0.85253 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.35 18.54 20.00 0.37 -13.98 16 2 C 0.25 5.76 15.43 89.44 1.38 7.14 16 3 C -0.05 -0.90 6.02 28.79 0.17 -0.73 16 4 C 0.13 3.05 5.30 86.38 0.46 3.51 16 5 N -0.99 -31.02 2.77 -519.83 -1.44 -32.46 16 6 C 0.16 3.83 5.83 85.63 0.50 4.33 16 7 C -0.16 -4.21 5.48 -19.77 -0.11 -4.31 16 8 C -0.06 -1.05 9.54 22.47 0.21 -0.83 16 9 C -0.17 -3.12 10.11 22.36 0.23 -2.89 16 10 C 0.08 1.90 11.18 84.69 0.95 2.85 16 11 N -0.52 -17.60 10.36 -195.83 -2.03 -19.63 16 12 C 0.09 3.23 10.86 84.67 0.92 4.15 16 13 S 2.72 130.86 4.93 -56.49 -0.28 130.58 16 14 O -1.03 -55.26 16.99 -128.00 -2.17 -57.43 16 15 O -1.03 -55.18 16.57 -128.00 -2.12 -57.30 16 16 C -1.03 -53.84 9.75 67.73 0.66 -53.18 16 17 H 0.11 5.25 7.81 -2.91 -0.02 5.23 16 18 C 0.08 4.52 5.46 84.66 0.46 4.98 16 19 N -0.89 -51.70 13.19 21.45 0.28 -51.41 16 20 Si 0.97 42.14 29.54 68.60 2.03 44.16 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 23 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 24 H 0.16 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.07 2.04 7.61 -2.38 -0.02 2.02 16 27 H 0.12 1.89 7.66 -2.39 -0.02 1.88 16 28 H 0.14 1.82 8.06 -2.39 -0.02 1.80 16 29 H 0.09 2.53 6.87 -2.39 -0.02 2.51 16 30 H 0.17 1.70 7.94 -2.91 -0.02 1.68 16 31 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 33 H 0.13 5.12 8.06 -2.91 -0.02 5.10 16 34 H 0.30 15.67 8.31 -92.70 -0.77 14.90 16 Total: -1.00 -80.57 323.89 1.59 -78.98 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.12 Total: 13.49 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 5.83 Total: -34.99 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -2.81 Total: -117.48 kcal Atomic # 8 Polarization: -110.44 SS G_CDS: -4.30 Total: -114.74 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 130.86 SS G_CDS: -0.28 Total: 130.58 kcal Total: -80.57 1.59 -78.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509587.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.774 kcal (2) G-P(sol) polarization free energy of solvation -80.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds