Wall clock time and date at job start Tue Mar 31 2020 06:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48494 * 109.47227 * 270.00505 * 3 2 1 5 5 H 1.48500 * 109.46795 * 30.00519 * 3 2 1 6 6 H 1.48500 * 109.46955 * 150.00078 * 3 2 1 7 7 C 1.38798 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99946 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46759 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00521 * 359.72922 * 11 10 9 13 13 N 1.34784 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99893 * 179.72962 * 13 11 10 15 15 H 1.08999 * 110.27110 * 34.29576 * 14 13 11 16 16 C 1.54346 * 110.29959 * 156.37481 * 14 13 11 17 17 C 1.54492 * 102.32256 * 145.21661 * 16 14 13 18 18 C 1.51374 * 105.21730 * 333.75359 * 17 16 14 19 19 C 1.38457 * 130.36407 * 197.14978 * 18 17 16 20 20 C 1.38326 * 120.19576 * 180.02562 * 19 18 17 21 21 F 1.35102 * 120.06447 * 179.97438 * 20 19 18 22 22 C 1.38481 * 119.87774 * 359.97297 * 20 19 18 23 23 C 1.38059 * 119.90854 * 0.02562 * 22 20 19 24 24 C 1.38232 * 109.75759 * 17.13182 * 18 17 16 25 25 H 0.97000 * 119.99806 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46816 * 60.00508 * 10 9 7 27 27 H 1.08993 * 109.47387 * 300.00147 * 10 9 7 28 28 H 0.97005 * 119.99846 * 359.72750 * 13 11 10 29 29 H 1.09000 * 110.82096 * 263.49822 * 16 14 13 30 30 H 1.08995 * 110.82620 * 27.05275 * 16 14 13 31 31 H 1.09011 * 110.33416 * 214.79031 * 17 16 14 32 32 H 1.08999 * 110.30828 * 92.71487 * 17 16 14 33 33 H 1.07997 * 119.90492 * 359.97438 * 19 18 17 34 34 H 1.08004 * 120.04578 * 180.02562 * 22 20 19 35 35 H 1.08003 * 119.87504 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8915 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7911 -5.5023 0.0045 13 7 2.8441 -6.3432 -0.0022 14 6 2.3303 -7.7151 0.0042 15 1 1.4044 -7.7743 -0.5678 16 6 3.3821 -8.6835 -0.5775 17 6 3.1573 -9.9590 0.2646 18 6 2.5759 -9.4727 1.5750 19 6 2.4717 -10.1084 2.8006 20 6 1.8927 -9.4573 3.8750 21 9 1.7919 -10.0802 5.0695 22 6 1.4166 -8.1657 3.7239 23 6 1.5208 -7.5322 2.5016 24 6 2.1007 -8.1833 1.4254 25 1 -0.4850 0.8401 0.0004 26 1 3.1251 -3.7318 0.8875 27 1 3.1238 -3.7310 -0.8924 28 1 3.8009 -6.1836 -0.0068 29 1 3.1900 -8.8755 -1.6331 30 1 4.3898 -8.2951 -0.4303 31 1 4.1043 -10.4705 0.4377 32 1 2.4549 -10.6247 -0.2370 33 1 2.8428 -11.1158 2.9179 34 1 0.9645 -7.6546 4.5610 35 1 1.1496 -6.5247 2.3845 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056315449.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:55 Heat of formation + Delta-G solvation = -62.915883 kcal Electronic energy + Delta-G solvation = -20307.623028 eV Core-core repulsion = 16924.742250 eV Total energy + Delta-G solvation = -3382.880778 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.02600 -40.61815 -38.74915 -35.97215 -33.52253 -32.44554 -31.19568 -29.27726 -29.00982 -26.34117 -25.45045 -23.17049 -21.49284 -21.15373 -20.32537 -17.91066 -17.29300 -16.84711 -16.52485 -16.11172 -15.91630 -15.62919 -14.82357 -14.81837 -14.64410 -14.12148 -13.69422 -13.64094 -13.15307 -13.05100 -12.69103 -12.60510 -12.39799 -12.13136 -11.97655 -11.72975 -11.15575 -11.07667 -11.04417 -11.00041 -10.77330 -9.83451 -9.48252 -9.10868 -9.08375 -8.99925 -8.61658 -8.26397 -6.52327 -6.23567 -3.94331 0.96097 1.08059 2.98585 3.01547 3.21194 3.26148 3.29727 3.42519 3.70688 3.86667 4.18680 4.26390 4.31884 4.70912 4.74303 4.82551 4.90088 5.03249 5.11736 5.13022 5.38431 5.40728 5.46396 5.52906 5.62773 5.75667 5.83799 5.86943 5.90961 5.96931 6.11124 6.17723 6.35745 6.59512 6.74804 7.57817 7.64679 8.33361 8.54968 9.21956 10.83822 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024466 B = 0.003239 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.156716 B = 8641.933706 C = 9321.707500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.155 4.155 11 C 0.532 3.468 12 O -0.514 6.514 13 N -0.731 5.731 14 C 0.186 3.814 15 H 0.106 0.894 16 C -0.124 4.124 17 C -0.078 4.078 18 C -0.069 4.069 19 C -0.148 4.148 20 C 0.099 3.901 21 F -0.141 7.141 22 C -0.154 4.154 23 C -0.055 4.055 24 C -0.115 4.115 25 H 0.268 0.732 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.400 0.600 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.908 -20.469 1.975 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.318 3.682 12 O -0.388 6.388 13 N -0.385 5.385 14 C 0.080 3.920 15 H 0.124 0.876 16 C -0.162 4.162 17 C -0.116 4.116 18 C -0.070 4.070 19 C -0.167 4.167 20 C 0.079 3.921 21 F -0.120 7.120 22 C -0.173 4.173 23 C -0.073 4.073 24 C -0.117 4.117 25 H 0.078 0.922 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.234 0.766 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.728 -20.699 2.014 21.858 hybrid contribution 2.341 1.280 0.389 2.697 sum 9.069 -19.419 2.403 21.566 Atomic orbital electron populations 1.70017 1.05949 1.27478 1.46823 1.24989 0.95023 0.99027 0.94501 0.86171 0.79426 0.81570 0.78360 1.20260 1.20742 1.19686 1.22867 0.94911 0.91663 1.59017 0.90931 1.85386 1.04818 0.96321 1.96729 1.23546 1.06656 0.95339 1.04979 1.20378 0.86621 0.86332 0.74836 1.90713 1.15251 1.85527 1.47337 1.46115 1.09979 1.04761 1.77618 1.20401 0.98557 0.81457 0.91551 0.87590 1.22632 0.99175 0.94187 1.00167 1.21054 1.01277 0.97788 0.91442 1.20296 0.97945 0.94558 0.94194 1.20432 1.03603 1.01045 0.91576 1.17521 1.01453 0.91950 0.81146 1.91492 1.94312 1.82494 1.43698 1.21112 1.03100 0.93803 0.99275 1.20664 0.95560 1.00461 0.90623 1.20995 0.99399 0.94971 0.96307 0.92168 0.89209 0.89179 0.76579 0.89354 0.90025 0.90044 0.89405 0.85059 0.84455 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 11 C 0.53 9.34 7.40 -10.98 -0.08 9.26 16 12 O -0.51 -10.98 15.13 5.56 0.08 -10.90 16 13 N -0.73 -9.12 5.10 -53.91 -0.27 -9.40 16 14 C 0.19 2.09 3.18 -68.04 -0.22 1.87 16 15 H 0.11 1.37 7.60 -51.93 -0.39 0.98 16 16 C -0.12 -0.90 6.77 -25.24 -0.17 -1.07 16 17 C -0.08 -0.55 6.77 -26.77 -0.18 -0.73 16 18 C -0.07 -0.70 6.14 -104.21 -0.64 -1.34 16 19 C -0.15 -1.52 10.02 -39.47 -0.40 -1.91 16 20 C 0.10 1.16 7.30 -39.46 -0.29 0.87 16 21 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 22 C -0.15 -1.90 10.03 -39.56 -0.40 -2.30 16 23 C -0.05 -0.74 9.92 -39.55 -0.39 -1.13 16 24 C -0.12 -1.40 5.79 -104.19 -0.60 -2.00 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 27 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 28 H 0.40 3.85 8.40 -40.82 -0.34 3.51 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.51 7.81 -51.93 -0.41 0.10 16 31 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.14 1.51 8.06 -52.48 -0.42 1.08 16 35 H 0.14 2.10 7.28 -52.48 -0.38 1.72 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -33.45 320.66 -8.80 -42.25 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -4.03 Total: 1.72 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -2.95 Total: -14.05 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.46 Total: -34.59 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.45 -8.80 -42.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056315449.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.666 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds