Wall clock time and date at job start Tue Mar 31 2020 06:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48494 * 109.47227 * 270.00505 * 3 2 1 5 5 H 1.48500 * 109.46795 * 30.00519 * 3 2 1 6 6 H 1.48500 * 109.46955 * 150.00078 * 3 2 1 7 7 C 1.38798 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99946 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46759 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00521 * 359.72922 * 11 10 9 13 13 N 1.34784 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99893 * 179.72962 * 13 11 10 15 15 H 1.08999 * 110.27110 * 34.29576 * 14 13 11 16 16 C 1.54346 * 110.29959 * 156.37481 * 14 13 11 17 17 C 1.54492 * 102.32256 * 145.21661 * 16 14 13 18 18 C 1.51374 * 105.21730 * 333.75359 * 17 16 14 19 19 C 1.38457 * 130.36407 * 197.14978 * 18 17 16 20 20 C 1.38326 * 120.19576 * 180.02562 * 19 18 17 21 21 F 1.35102 * 120.06447 * 179.97438 * 20 19 18 22 22 C 1.38481 * 119.87774 * 359.97297 * 20 19 18 23 23 C 1.38059 * 119.90854 * 0.02562 * 22 20 19 24 24 C 1.38232 * 109.75759 * 17.13182 * 18 17 16 25 25 H 0.97000 * 119.99806 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46816 * 60.00508 * 10 9 7 27 27 H 1.08993 * 109.47387 * 300.00147 * 10 9 7 28 28 H 0.97005 * 119.99846 * 359.72750 * 13 11 10 29 29 H 1.09000 * 110.82096 * 263.49822 * 16 14 13 30 30 H 1.08995 * 110.82620 * 27.05275 * 16 14 13 31 31 H 1.09011 * 110.33416 * 214.79031 * 17 16 14 32 32 H 1.08999 * 110.30828 * 92.71487 * 17 16 14 33 33 H 1.07997 * 119.90492 * 359.97438 * 19 18 17 34 34 H 1.08004 * 120.04578 * 180.02562 * 22 20 19 35 35 H 1.08003 * 119.87504 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8915 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7911 -5.5023 0.0045 13 7 2.8441 -6.3432 -0.0022 14 6 2.3303 -7.7151 0.0042 15 1 1.4044 -7.7743 -0.5678 16 6 3.3821 -8.6835 -0.5775 17 6 3.1573 -9.9590 0.2646 18 6 2.5759 -9.4727 1.5750 19 6 2.4717 -10.1084 2.8006 20 6 1.8927 -9.4573 3.8750 21 9 1.7919 -10.0802 5.0695 22 6 1.4166 -8.1657 3.7239 23 6 1.5208 -7.5322 2.5016 24 6 2.1007 -8.1833 1.4254 25 1 -0.4850 0.8401 0.0004 26 1 3.1251 -3.7318 0.8875 27 1 3.1238 -3.7310 -0.8924 28 1 3.8009 -6.1836 -0.0068 29 1 3.1900 -8.8755 -1.6331 30 1 4.3898 -8.2951 -0.4303 31 1 4.1043 -10.4705 0.4377 32 1 2.4549 -10.6247 -0.2370 33 1 2.8428 -11.1158 2.9179 34 1 0.9645 -7.6546 4.5610 35 1 1.1496 -6.5247 2.3845 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056315449.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:55 Heat of formation + Delta-G solvation = -84.137539 kcal Electronic energy + Delta-G solvation = -20308.543268 eV Core-core repulsion = 16924.742250 eV Total energy + Delta-G solvation = -3383.801018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.96021 -41.57376 -40.02661 -36.92045 -34.63660 -34.56026 -32.22635 -30.65884 -29.80522 -27.75899 -27.12757 -24.01711 -22.48953 -21.97384 -21.55792 -19.83012 -18.28432 -17.85759 -17.78272 -17.11172 -16.97627 -16.87662 -16.61403 -16.10200 -16.00153 -15.36596 -14.88581 -14.66127 -14.55061 -14.20935 -13.90394 -13.66028 -13.42552 -13.16740 -13.06239 -12.89088 -12.78400 -12.73424 -12.52996 -11.90912 -11.79447 -11.70788 -11.14430 -10.95260 -10.27583 -10.19283 -9.95397 -9.52591 -8.66382 -8.34998 -6.12759 0.04214 0.18484 1.27352 1.42219 1.47264 1.57555 1.60830 2.24181 2.28420 2.56687 2.99293 3.04158 3.31920 3.41911 3.53620 3.89380 3.90385 4.01717 4.17851 4.18532 4.25232 4.31395 4.51219 4.60413 4.66532 4.77303 4.89145 5.05360 5.06372 5.10762 5.17694 5.29148 5.41608 5.43148 5.56762 5.85448 6.19472 6.50916 7.06531 7.25344 8.74126 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024466 B = 0.003239 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.156716 B = 8641.933706 C = 9321.707500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.149 6.149 10 C -0.131 4.131 11 C 0.535 3.465 12 O -0.560 6.560 13 N -0.705 5.705 14 C 0.179 3.821 15 H 0.085 0.915 16 C -0.112 4.112 17 C -0.073 4.073 18 C -0.059 4.059 19 C -0.141 4.141 20 C 0.089 3.911 21 F -0.144 7.144 22 C -0.166 4.166 23 C -0.077 4.077 24 C -0.132 4.132 25 H 0.271 0.729 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.417 0.583 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.161 0.839 34 H 0.139 0.861 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.110 -22.174 1.216 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.078 5.922 10 C -0.282 4.282 11 C 0.321 3.679 12 O -0.438 6.438 13 N -0.359 5.359 14 C 0.075 3.925 15 H 0.103 0.897 16 C -0.150 4.150 17 C -0.109 4.109 18 C -0.060 4.060 19 C -0.159 4.159 20 C 0.070 3.930 21 F -0.123 7.123 22 C -0.185 4.185 23 C -0.096 4.096 24 C -0.134 4.134 25 H 0.080 0.920 26 H 0.124 0.876 27 H 0.129 0.871 28 H 0.255 0.745 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.179 0.821 34 H 0.156 0.844 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.984 -22.443 1.254 24.595 hybrid contribution 1.365 1.668 0.652 2.251 sum 11.348 -20.775 1.905 23.749 Atomic orbital electron populations 1.70184 1.07967 1.28591 1.48032 1.26117 0.95947 1.03294 0.93736 0.84964 0.78199 0.76063 0.78827 1.19224 1.20378 1.18221 1.23214 0.95353 0.92101 1.58847 0.89951 1.85560 1.10462 0.99139 1.97043 1.23386 1.03586 0.94530 1.06703 1.20071 0.86365 0.86636 0.74826 1.90703 1.17253 1.85980 1.49836 1.45857 1.10267 1.04423 1.75333 1.20661 0.99473 0.81079 0.91323 0.89713 1.22687 0.98443 0.92798 1.01035 1.21179 1.02826 0.97784 0.89160 1.20677 0.96541 0.93324 0.95452 1.20753 1.02266 1.02068 0.90859 1.17657 1.01939 0.91771 0.81653 1.91482 1.94399 1.82403 1.44012 1.21141 1.03739 0.94570 0.99056 1.20518 0.97333 0.99646 0.92108 1.21157 0.99796 0.96266 0.96139 0.92012 0.87588 0.87058 0.74480 0.87474 0.88147 0.87160 0.87783 0.82136 0.84351 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.95 13.22 21.65 0.29 -55.67 16 2 C 0.01 0.79 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.46 29.55 68.60 2.03 45.48 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.55 -31.13 9.50 67.95 0.65 -30.48 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.21 20.57 -56.49 -1.16 -9.38 16 10 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 11 C 0.54 18.99 7.40 87.65 0.65 19.64 16 12 O -0.56 -25.08 15.13 -3.04 -0.05 -25.13 16 13 N -0.71 -16.71 5.10 -442.87 -2.26 -18.97 16 14 C 0.18 3.78 3.18 44.92 0.14 3.92 16 15 H 0.08 2.19 7.60 -2.39 -0.02 2.17 16 16 C -0.11 -1.17 6.77 31.56 0.21 -0.95 16 17 C -0.07 -0.67 6.77 30.57 0.21 -0.46 16 18 C -0.06 -1.03 6.14 -19.60 -0.12 -1.15 16 19 C -0.14 -2.52 10.02 22.34 0.22 -2.30 16 20 C 0.09 2.03 7.30 22.35 0.16 2.19 16 21 F -0.14 -3.37 17.27 44.97 0.78 -2.60 16 22 C -0.17 -4.26 10.03 22.29 0.22 -4.04 16 23 C -0.08 -2.20 9.92 22.29 0.22 -1.98 16 24 C -0.13 -3.10 5.79 -19.58 -0.11 -3.22 16 25 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 26 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 27 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 28 H 0.42 6.92 8.40 -92.70 -0.78 6.14 16 29 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.73 7.81 -2.39 -0.02 0.71 16 31 H 0.11 0.51 8.14 -2.38 -0.02 0.50 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 34 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.10 3.58 7.28 -2.91 -0.02 3.55 16 Total: -1.00 -76.95 320.66 3.33 -73.62 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.35 Total: 14.86 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 3.36 Total: -22.22 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -1.97 Total: -74.64 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.05 Total: -25.13 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.38 kcal Total: -76.95 3.33 -73.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056315449.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.521 kcal (2) G-P(sol) polarization free energy of solvation -76.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds