Wall clock time and date at job start Tue Mar 31 2020 06:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99845 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99838 * 3 2 1 7 7 C 1.38801 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99941 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99933 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00101 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99720 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99750 * 180.02562 * 13 11 10 15 15 H 1.08999 * 110.26744 * 325.69540 * 14 13 11 16 16 C 1.54345 * 110.30422 * 203.62606 * 14 13 11 17 17 C 1.54344 * 102.39774 * 214.72000 * 16 14 13 18 18 C 1.51379 * 105.16763 * 26.34836 * 17 16 14 19 19 C 1.38462 * 130.36542 * 162.81956 * 18 17 16 20 20 C 1.38322 * 120.19916 * 179.97438 * 19 18 17 21 21 F 1.35102 * 120.06453 * 180.02562 * 20 19 18 22 22 C 1.38484 * 119.87594 * 0.02562 * 20 19 18 23 23 C 1.38060 * 119.90969 * 0.02562 * 22 20 19 24 24 C 1.38373 * 120.29595 * 359.90773 * 23 22 20 25 25 H 0.97001 * 120.00200 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47176 * 299.99944 * 10 9 7 27 27 H 1.08998 * 109.47231 * 59.99799 * 10 9 7 28 28 H 0.96997 * 120.00437 * 359.97438 * 13 11 10 29 29 H 1.09004 * 110.82286 * 332.94496 * 16 14 13 30 30 H 1.09000 * 110.82631 * 96.29581 * 16 14 13 31 31 H 1.08998 * 110.30810 * 145.27387 * 17 16 14 32 32 H 1.08997 * 110.30266 * 267.33622 * 17 16 14 33 33 H 1.08001 * 119.90035 * 359.97272 * 19 18 17 34 34 H 1.08001 * 120.03844 * 179.97438 * 22 20 19 35 35 H 1.07999 * 119.87412 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1041 1.6964 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3430 0.0018 14 6 2.3303 -7.7150 0.0019 15 1 1.4066 -7.7723 0.5777 16 6 3.3842 -8.6815 0.5827 17 6 3.1567 -9.9600 -0.2515 18 6 2.5723 -9.4789 -1.5624 19 6 2.4648 -10.1195 -2.7852 20 6 1.8834 -9.4727 -3.8608 21 9 1.7794 -10.1006 -5.0525 22 6 1.4082 -8.1803 -3.7139 23 6 1.5165 -7.5414 -2.4948 24 6 2.0965 -8.1874 -1.4173 25 1 -0.4850 -0.8400 -0.0004 26 1 3.1243 -3.7313 -0.8894 27 1 3.1244 -3.7313 0.8905 28 1 3.8008 -6.1835 0.0015 29 1 4.3914 -8.2936 0.4303 30 1 3.1983 -8.8674 1.6405 31 1 4.1032 -10.4721 -0.4247 32 1 2.4560 -10.6230 0.2559 33 1 2.8359 -11.1273 -2.8995 34 1 0.9542 -7.6727 -4.5521 35 1 1.1461 -6.5334 -2.3810 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056315451.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:58 Heat of formation + Delta-G solvation = -68.157526 kcal Electronic energy + Delta-G solvation = -20340.130066 eV Core-core repulsion = 16957.021993 eV Total energy + Delta-G solvation = -3383.108073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.06446 -40.67976 -38.84725 -36.03809 -33.60696 -32.55333 -31.26664 -29.40288 -29.06118 -26.39820 -24.82995 -23.21726 -21.54780 -21.20294 -20.40672 -18.37586 -17.41049 -16.93533 -16.66075 -16.17732 -16.06974 -15.69707 -14.91861 -14.84844 -14.39794 -13.88630 -13.76964 -13.71940 -13.25579 -13.12821 -12.67580 -12.51485 -12.44209 -12.23243 -12.16773 -11.83066 -11.74141 -11.19761 -11.04921 -10.93642 -10.19034 -9.62761 -9.58121 -9.16264 -9.09680 -9.02275 -8.66382 -8.25760 -6.70246 -6.64491 -4.02816 0.91123 1.03504 2.86160 2.90182 3.30857 3.36088 3.36364 3.54905 3.59780 3.81837 4.20713 4.23444 4.26855 4.65646 4.69661 4.77269 4.85446 4.95823 5.03860 5.20193 5.31732 5.34412 5.40588 5.48160 5.50754 5.70296 5.72056 5.79437 5.85571 5.92207 5.97753 6.12492 6.29851 6.51490 6.69943 7.54739 7.89340 8.43784 8.47672 9.24458 10.79413 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024526 B = 0.003246 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.364943 B = 8623.126095 C = 9298.091547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.036 3.964 3 Si 1.084 2.916 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.609 4.609 8 H 0.066 0.934 9 S -0.115 6.115 10 C -0.132 4.132 11 C 0.531 3.469 12 O -0.515 6.515 13 N -0.729 5.729 14 C 0.186 3.814 15 H 0.106 0.894 16 C -0.124 4.124 17 C -0.078 4.078 18 C -0.069 4.069 19 C -0.147 4.147 20 C 0.099 3.901 21 F -0.141 7.141 22 C -0.154 4.154 23 C -0.055 4.055 24 C -0.116 4.116 25 H 0.278 0.722 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.400 0.600 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.452 -21.055 -1.996 23.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.175 4.175 3 Si 0.910 3.090 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.757 4.757 8 H 0.084 0.916 9 S 0.112 5.888 10 C -0.283 4.283 11 C 0.317 3.683 12 O -0.389 6.389 13 N -0.383 5.383 14 C 0.081 3.919 15 H 0.124 0.876 16 C -0.162 4.162 17 C -0.115 4.115 18 C -0.069 4.069 19 C -0.166 4.166 20 C 0.080 3.920 21 F -0.119 7.119 22 C -0.173 4.173 23 C -0.074 4.074 24 C -0.118 4.118 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.235 0.765 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.150 0.850 34 H 0.156 0.844 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.223 -19.759 -2.023 21.135 hybrid contribution 2.169 -1.383 -0.399 2.603 sum 9.392 -21.142 -2.422 23.261 Atomic orbital electron populations 1.70802 1.06709 1.30968 1.43265 1.26051 0.96311 1.02136 0.92973 0.83335 0.74776 0.74214 0.76723 1.20263 1.21128 1.21121 1.23704 0.96027 0.92203 1.63746 0.91614 1.84809 1.07990 0.98802 1.97235 1.23330 1.05210 0.94498 1.05299 1.20348 0.86661 0.86335 0.74950 1.90713 1.15235 1.85521 1.47403 1.46081 1.09977 1.04787 1.77466 1.20414 0.98558 0.81309 0.91650 0.87579 1.22607 0.99133 0.94183 1.00252 1.21023 1.01309 0.97761 0.91439 1.20345 0.97870 0.94494 0.94225 1.20442 1.03524 1.01071 0.91574 1.17518 1.01368 0.91857 0.81244 1.91495 1.94275 1.82253 1.43917 1.21108 1.03093 0.93777 0.99290 1.20603 0.95661 1.00416 0.90676 1.20985 0.99503 0.95013 0.96257 0.90990 0.88947 0.88906 0.76507 0.90016 0.89329 0.89977 0.89351 0.84997 0.84445 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.30 13.67 55.49 0.76 -26.54 16 2 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 3 Si 1.08 24.71 29.92 -169.99 -5.09 19.63 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.61 -17.36 9.50 30.94 0.29 -17.06 16 8 H 0.07 1.79 7.80 -52.49 -0.41 1.38 16 9 S -0.11 -3.02 19.60 -107.50 -2.11 -5.13 16 10 C -0.13 -2.57 6.16 36.01 0.22 -2.35 16 11 C 0.53 9.26 7.41 -10.99 -0.08 9.18 16 12 O -0.51 -10.90 15.15 5.56 0.08 -10.82 16 13 N -0.73 -9.01 5.10 -53.91 -0.27 -9.29 16 14 C 0.19 2.07 3.19 -68.04 -0.22 1.85 16 15 H 0.11 1.36 7.60 -51.93 -0.39 0.97 16 16 C -0.12 -0.88 6.76 -25.32 -0.17 -1.05 16 17 C -0.08 -0.53 6.77 -26.85 -0.18 -0.71 16 18 C -0.07 -0.68 6.14 -104.15 -0.64 -1.32 16 19 C -0.15 -1.49 10.02 -39.47 -0.40 -1.89 16 20 C 0.10 1.16 7.30 -39.46 -0.29 0.87 16 21 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 22 C -0.15 -1.88 10.03 -39.56 -0.40 -2.28 16 23 C -0.06 -0.74 9.91 -39.60 -0.39 -1.13 16 24 C -0.12 -1.39 5.79 -104.18 -0.60 -1.99 16 25 H 0.28 8.75 7.12 -40.82 -0.29 8.46 16 26 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 27 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 28 H 0.40 3.81 8.40 -40.82 -0.34 3.47 16 29 H 0.08 0.50 7.81 -51.93 -0.41 0.09 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.13 2.07 7.30 -52.49 -0.38 1.68 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -34.18 319.34 -8.70 -42.88 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -3.98 Total: 3.06 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -2.95 Total: -16.96 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.48 Total: -35.83 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.09 Total: 19.63 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.11 Total: -5.13 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.18 -8.70 -42.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056315451.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.273 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds