Wall clock time and date at job start Tue Mar 31 2020 06:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99845 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99838 * 3 2 1 7 7 C 1.38801 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99941 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99933 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00101 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99720 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99750 * 180.02562 * 13 11 10 15 15 H 1.08999 * 110.26744 * 325.69540 * 14 13 11 16 16 C 1.54345 * 110.30422 * 203.62606 * 14 13 11 17 17 C 1.54344 * 102.39774 * 214.72000 * 16 14 13 18 18 C 1.51379 * 105.16763 * 26.34836 * 17 16 14 19 19 C 1.38462 * 130.36542 * 162.81956 * 18 17 16 20 20 C 1.38322 * 120.19916 * 179.97438 * 19 18 17 21 21 F 1.35102 * 120.06453 * 180.02562 * 20 19 18 22 22 C 1.38484 * 119.87594 * 0.02562 * 20 19 18 23 23 C 1.38060 * 119.90969 * 0.02562 * 22 20 19 24 24 C 1.38373 * 120.29595 * 359.90773 * 23 22 20 25 25 H 0.97001 * 120.00200 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47176 * 299.99944 * 10 9 7 27 27 H 1.08998 * 109.47231 * 59.99799 * 10 9 7 28 28 H 0.96997 * 120.00437 * 359.97438 * 13 11 10 29 29 H 1.09004 * 110.82286 * 332.94496 * 16 14 13 30 30 H 1.09000 * 110.82631 * 96.29581 * 16 14 13 31 31 H 1.08998 * 110.30810 * 145.27387 * 17 16 14 32 32 H 1.08997 * 110.30266 * 267.33622 * 17 16 14 33 33 H 1.08001 * 119.90035 * 359.97272 * 19 18 17 34 34 H 1.08001 * 120.03844 * 179.97438 * 22 20 19 35 35 H 1.07999 * 119.87412 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1041 1.6964 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3430 0.0018 14 6 2.3303 -7.7150 0.0019 15 1 1.4066 -7.7723 0.5777 16 6 3.3842 -8.6815 0.5827 17 6 3.1567 -9.9600 -0.2515 18 6 2.5723 -9.4789 -1.5624 19 6 2.4648 -10.1195 -2.7852 20 6 1.8834 -9.4727 -3.8608 21 9 1.7794 -10.1006 -5.0525 22 6 1.4082 -8.1803 -3.7139 23 6 1.5165 -7.5414 -2.4948 24 6 2.0965 -8.1874 -1.4173 25 1 -0.4850 -0.8400 -0.0004 26 1 3.1243 -3.7313 -0.8894 27 1 3.1244 -3.7313 0.8905 28 1 3.8008 -6.1835 0.0015 29 1 4.3914 -8.2936 0.4303 30 1 3.1983 -8.8674 1.6405 31 1 4.1032 -10.4721 -0.4247 32 1 2.4560 -10.6230 0.2559 33 1 2.8359 -11.1273 -2.8995 34 1 0.9542 -7.6727 -4.5521 35 1 1.1461 -6.5334 -2.3810 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056315451.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:57 Heat of formation + Delta-G solvation = -90.025444 kcal Electronic energy + Delta-G solvation = -20341.078330 eV Core-core repulsion = 16957.021993 eV Total energy + Delta-G solvation = -3384.056337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.98806 -41.63296 -40.11132 -36.97761 -34.77100 -34.66794 -32.29530 -30.78100 -29.84367 -27.45189 -26.91274 -24.05228 -22.54206 -22.01306 -21.63057 -20.41823 -18.40009 -17.95313 -17.89616 -17.21436 -17.13264 -16.69244 -16.39151 -16.18885 -15.72486 -15.41675 -15.04956 -14.69075 -14.53310 -14.39281 -13.95394 -13.90752 -13.75071 -13.45081 -13.09374 -12.78979 -12.73553 -12.71827 -11.95855 -11.94443 -11.81638 -11.55071 -11.10056 -11.06470 -10.33152 -10.26952 -9.99141 -9.56080 -8.92897 -8.87124 -6.28013 0.00408 0.14967 1.20311 1.49968 1.52038 1.60371 1.80588 2.15701 2.34367 2.51993 3.00750 3.01976 3.13582 3.37310 3.49393 3.80167 3.86277 3.95639 4.12438 4.14621 4.16319 4.22476 4.37337 4.56221 4.62466 4.73367 4.85402 5.02085 5.03258 5.06912 5.13510 5.25182 5.38110 5.51176 5.63656 5.81882 6.14483 6.41947 7.05712 7.15366 8.50630 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024526 B = 0.003246 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.364943 B = 8623.126095 C = 9298.091547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.019 4.019 3 Si 1.136 2.864 4 H -0.281 1.281 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.615 4.615 8 H 0.075 0.925 9 S -0.193 6.193 10 C -0.111 4.111 11 C 0.535 3.465 12 O -0.560 6.560 13 N -0.703 5.703 14 C 0.180 3.820 15 H 0.085 0.915 16 C -0.112 4.112 17 C -0.072 4.072 18 C -0.058 4.058 19 C -0.141 4.141 20 C 0.090 3.910 21 F -0.144 7.144 22 C -0.166 4.166 23 C -0.078 4.078 24 C -0.133 4.133 25 H 0.260 0.740 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.418 0.582 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.162 0.838 34 H 0.139 0.861 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.774 -22.983 -1.225 26.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.222 4.222 3 Si 0.953 3.047 4 H -0.206 1.206 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.763 4.763 8 H 0.093 0.907 9 S 0.033 5.967 10 C -0.263 4.263 11 C 0.320 3.680 12 O -0.437 6.437 13 N -0.357 5.357 14 C 0.075 3.925 15 H 0.103 0.897 16 C -0.150 4.150 17 C -0.109 4.109 18 C -0.059 4.059 19 C -0.159 4.159 20 C 0.071 3.929 21 F -0.123 7.123 22 C -0.185 4.185 23 C -0.096 4.096 24 C -0.135 4.135 25 H 0.071 0.929 26 H 0.126 0.874 27 H 0.131 0.869 28 H 0.256 0.744 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.179 0.821 34 H 0.156 0.844 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.601 -21.745 -1.252 24.224 hybrid contribution 1.166 -0.940 -0.668 1.640 sum 11.767 -22.685 -1.920 25.627 Atomic orbital electron populations 1.70920 1.08033 1.30014 1.45896 1.27820 0.96297 1.06374 0.91681 0.82728 0.73953 0.69528 0.78456 1.20587 1.18869 1.18675 1.24049 0.96532 0.92894 1.62810 0.90680 1.85044 1.13092 1.01064 1.97475 1.23239 1.02209 0.93827 1.06979 1.20016 0.86414 0.86567 0.74984 1.90705 1.17201 1.85947 1.49898 1.45833 1.10265 1.04430 1.75134 1.20680 0.99500 0.80905 0.91412 0.89675 1.22663 0.98392 0.92800 1.01128 1.21151 1.02856 0.97760 0.89158 1.20726 0.96460 0.93245 0.95482 1.20764 1.02188 1.02105 0.90848 1.17656 1.01848 0.91669 0.81755 1.91485 1.94363 1.82163 1.44239 1.21137 1.03751 0.94549 0.99078 1.20458 0.97435 0.99587 0.92163 1.21148 0.99897 0.96321 0.96084 0.92861 0.87372 0.86859 0.74403 0.88132 0.87445 0.87085 0.87721 0.82065 0.84360 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.09 13.67 21.65 0.30 -57.80 16 2 C -0.02 -1.08 5.49 84.86 0.47 -0.61 16 3 Si 1.14 49.09 29.92 68.60 2.05 51.15 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 7 C -0.62 -35.35 9.50 67.95 0.65 -34.70 16 8 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 9 S -0.19 -10.56 19.60 -56.49 -1.11 -11.66 16 10 C -0.11 -4.29 6.16 71.24 0.44 -3.85 16 11 C 0.53 18.75 7.41 87.66 0.65 19.40 16 12 O -0.56 -24.77 15.15 -3.03 -0.05 -24.81 16 13 N -0.70 -16.37 5.10 -442.88 -2.26 -18.63 16 14 C 0.18 3.71 3.19 44.92 0.14 3.85 16 15 H 0.09 2.16 7.60 -2.39 -0.02 2.14 16 16 C -0.11 -1.12 6.76 31.51 0.21 -0.91 16 17 C -0.07 -0.64 6.77 30.52 0.21 -0.43 16 18 C -0.06 -0.99 6.14 -19.56 -0.12 -1.11 16 19 C -0.14 -2.47 10.02 22.34 0.22 -2.24 16 20 C 0.09 2.02 7.30 22.35 0.16 2.19 16 21 F -0.14 -3.32 17.27 44.97 0.78 -2.55 16 22 C -0.17 -4.21 10.03 22.29 0.22 -3.99 16 23 C -0.08 -2.19 9.91 22.26 0.22 -1.96 16 24 C -0.13 -3.08 5.79 -19.58 -0.11 -3.19 16 25 H 0.26 17.22 7.12 -92.71 -0.66 16.56 16 26 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 27 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 28 H 0.42 6.76 8.40 -92.71 -0.78 5.98 16 29 H 0.10 0.69 7.81 -2.38 -0.02 0.67 16 30 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 35 H 0.10 3.49 7.30 -2.91 -0.02 3.47 16 Total: -1.00 -78.66 319.34 3.53 -75.13 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.46 Total: 16.74 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: 3.36 Total: -27.57 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -1.96 Total: -76.42 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.05 Total: -24.81 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.78 Total: -2.55 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 2.05 Total: 51.15 kcal Atomic # 16 Polarization: -10.56 SS G_CDS: -1.11 Total: -11.66 kcal Total: -78.66 3.53 -75.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056315451.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.894 kcal (2) G-P(sol) polarization free energy of solvation -78.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds