Wall clock time and date at job start Tue Mar 31 2020 07:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86794 * 120.00036 * 2 1 4 4 H 1.48500 * 109.47658 * 273.61404 * 3 2 1 5 5 H 1.48501 * 109.47127 * 33.61647 * 3 2 1 6 6 H 1.48503 * 109.47034 * 153.61278 * 3 2 1 7 7 C 1.38943 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00646 * 341.32932 * 7 2 1 9 9 N 1.37096 * 120.00319 * 161.33157 * 7 2 1 10 10 C 1.34780 * 119.99426 * 320.25643 * 9 7 2 11 11 O 1.21290 * 120.00204 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99718 * 179.97438 * 10 9 7 13 13 O 1.42900 * 109.46915 * 179.97438 * 12 10 9 14 14 C 1.35924 * 116.99914 * 180.02562 * 13 12 10 15 15 C 1.38723 * 120.03999 * 0.27447 * 14 13 12 16 16 C 1.38143 * 119.95317 * 180.23833 * 15 14 13 17 17 C 1.38362 * 120.04375 * 359.48693 * 16 15 14 18 18 Cl 1.73605 * 119.95789 * 180.27997 * 17 16 15 19 19 C 1.38366 * 120.08693 * 0.25917 * 17 16 15 20 20 C 1.38140 * 120.03910 * 359.97438 * 19 17 16 21 21 C 1.46498 * 120.00654 * 140.25331 * 9 7 2 22 22 C 1.53005 * 117.49384 * 2.39637 * 21 9 7 23 23 C 1.53005 * 117.49860 * 293.73908 * 21 9 7 24 24 H 0.96994 * 119.99835 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46767 * 60.00006 * 12 10 9 26 26 H 1.08999 * 109.47191 * 300.00187 * 12 10 9 27 27 H 1.07997 * 120.02409 * 359.97438 * 15 14 13 28 28 H 1.08002 * 119.97882 * 179.76932 * 16 15 14 29 29 H 1.08002 * 119.98021 * 180.02562 * 19 17 16 30 30 H 1.07997 * 120.02106 * 179.97438 * 20 19 17 31 31 H 1.09001 * 115.55082 * 148.06369 * 21 9 7 32 32 H 1.08993 * 117.49957 * 0.02562 * 22 21 9 33 33 H 1.09007 * 117.49563 * 145.01978 * 22 21 9 34 34 H 1.08996 * 117.49699 * 214.97817 * 23 21 9 35 35 H 1.08998 * 117.49582 * 359.97349 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4193 2.0906 -1.3972 5 1 1.4859 2.6293 0.7751 6 1 3.5818 1.4192 0.6223 7 6 2.0088 -1.2033 -0.0005 8 1 1.5115 -2.1142 0.2985 9 7 3.3257 -1.2345 -0.3806 10 6 3.7456 -0.4831 -1.4177 11 8 2.9585 0.2202 -2.0151 12 6 5.1933 -0.5169 -1.8352 13 8 5.3883 0.3567 -2.9492 14 6 6.6479 0.4429 -3.4526 15 6 7.6735 -0.3024 -2.8894 16 6 8.9540 -0.2096 -3.3993 17 6 9.2118 0.6180 -4.4778 18 17 10.8204 0.7273 -5.1215 19 6 8.1892 1.3581 -5.0443 20 6 6.9084 1.2717 -4.5341 21 6 4.2764 -2.0843 0.3406 22 6 3.7276 -2.9556 1.4723 23 6 4.5804 -1.7264 1.7968 24 1 -0.4849 0.8400 0.0004 25 1 5.4660 -1.5334 -2.1189 26 1 5.8189 -0.1916 -1.0040 27 1 7.4718 -0.9515 -2.0501 28 1 9.7535 -0.7868 -2.9588 29 1 8.3923 2.0032 -5.8863 30 1 6.1105 1.8499 -4.9762 31 1 5.0911 -2.4915 -0.2583 32 1 2.6593 -2.8967 1.6799 33 1 4.1816 -3.9358 1.6183 34 1 5.5950 -1.8984 2.1560 35 1 4.0733 -0.8584 2.2180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057552512.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:07 Heat of formation + Delta-G solvation = -23.216339 kcal Electronic energy + Delta-G solvation = -21114.316380 eV Core-core repulsion = 17718.740608 eV Total energy + Delta-G solvation = -3395.575773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.56445 -40.65191 -38.72311 -37.98845 -37.10480 -34.96312 -33.55445 -32.27600 -31.11871 -29.62347 -26.54279 -24.08072 -23.52952 -23.12744 -22.87800 -21.22260 -19.56405 -18.96759 -18.05156 -17.64069 -17.47604 -16.93905 -16.84981 -15.85004 -15.68650 -15.54054 -15.01698 -14.96668 -14.66523 -14.54354 -14.25923 -14.01159 -13.50742 -13.20240 -13.01150 -12.87039 -12.45301 -12.30005 -12.21041 -12.04789 -11.73828 -11.70920 -11.61403 -11.23521 -10.76960 -10.47529 -10.15001 -9.49197 -9.17832 -8.47079 -6.21675 0.16631 0.21085 1.13120 1.17695 1.26687 1.49351 1.75261 1.79645 2.39096 2.57990 2.78907 2.93385 3.19766 3.55084 3.77255 3.82846 3.95325 4.07246 4.08581 4.15023 4.18781 4.32328 4.34217 4.48556 4.90347 4.91138 4.92240 4.97171 5.18989 5.22872 5.24156 5.47165 5.53154 5.63582 5.78674 6.26754 6.67352 6.80309 7.25058 7.73680 8.59848 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.023790 B = 0.003945 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.701060 B = 7095.843105 C = 7888.040449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.043 3.957 3 Si 0.963 3.037 4 H -0.278 1.278 5 H -0.310 1.310 6 H -0.265 1.265 7 C -0.338 4.338 8 H 0.081 0.919 9 N -0.442 5.442 10 C 0.433 3.567 11 O -0.576 6.576 12 C 0.058 3.942 13 O -0.320 6.320 14 C 0.114 3.886 15 C -0.197 4.197 16 C -0.064 4.064 17 C -0.083 4.083 18 Cl -0.068 7.068 19 C -0.067 4.067 20 C -0.156 4.156 21 C 0.034 3.966 22 C -0.166 4.166 23 C -0.183 4.183 24 H 0.273 0.727 25 H 0.124 0.876 26 H 0.112 0.888 27 H 0.162 0.838 28 H 0.162 0.838 29 H 0.157 0.843 30 H 0.136 0.864 31 H 0.161 0.839 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.437 -3.077 -3.744 23.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.162 4.162 3 Si 0.795 3.205 4 H -0.206 1.206 5 H -0.240 1.240 6 H -0.190 1.190 7 C -0.465 4.465 8 H 0.098 0.902 9 N -0.163 5.163 10 C 0.224 3.776 11 O -0.461 6.461 12 C -0.019 4.019 13 O -0.233 6.233 14 C 0.069 3.931 15 C -0.215 4.215 16 C -0.083 4.083 17 C -0.110 4.110 18 Cl -0.039 7.039 19 C -0.086 4.086 20 C -0.175 4.175 21 C -0.070 4.070 22 C -0.204 4.204 23 C -0.221 4.221 24 H 0.082 0.918 25 H 0.142 0.858 26 H 0.130 0.870 27 H 0.180 0.820 28 H 0.180 0.820 29 H 0.175 0.825 30 H 0.154 0.846 31 H 0.178 0.822 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.155 0.845 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 22.838 -2.573 -4.142 23.353 hybrid contribution -0.545 0.884 0.058 1.040 sum 22.293 -1.689 -4.084 22.727 Atomic orbital electron populations 1.69809 1.07950 1.28721 1.48055 1.25922 0.95460 1.02066 0.92719 0.85526 0.78653 0.79747 0.76567 1.20590 1.24033 1.18970 1.18724 0.85317 0.94881 1.47579 0.90184 1.43207 1.07646 1.39680 1.25796 1.20797 0.90800 0.84429 0.81561 1.90542 1.57046 1.42792 1.55732 1.22587 0.93829 0.96219 0.89303 1.86186 1.27066 1.63073 1.46967 1.19542 0.83619 0.95854 0.94105 1.21509 0.92289 1.03615 1.04133 1.21118 0.96941 0.96494 0.93726 1.20933 0.86839 1.03554 0.99685 1.98360 1.21956 1.97619 1.86010 1.21011 0.89930 0.97985 0.99651 1.20570 0.97992 1.01756 0.97154 1.22404 0.96049 0.99320 0.89197 1.23184 1.00185 0.96195 1.00801 1.23371 1.02124 0.98962 0.97646 0.91780 0.85849 0.87042 0.82028 0.82037 0.82492 0.84642 0.82229 0.90698 0.84963 0.84472 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.45 13.96 21.66 0.30 -57.15 16 2 C 0.04 2.58 4.89 84.92 0.41 2.99 16 3 Si 0.96 52.38 24.58 68.60 1.69 54.06 16 4 H -0.28 -16.46 6.09 99.48 0.61 -15.86 16 5 H -0.31 -16.44 7.11 99.48 0.71 -15.73 16 6 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 7 C -0.34 -18.85 8.77 84.04 0.74 -18.12 16 8 H 0.08 4.69 6.95 -2.91 -0.02 4.67 16 9 N -0.44 -19.97 2.56 -613.11 -1.57 -21.53 16 10 C 0.43 19.98 5.96 87.66 0.52 20.50 16 11 O -0.58 -33.16 11.38 15.98 0.18 -32.98 16 12 C 0.06 1.85 3.85 71.24 0.27 2.13 16 13 O -0.32 -11.47 9.67 -73.66 -0.71 -12.18 16 14 C 0.11 3.14 6.69 22.50 0.15 3.29 16 15 C -0.20 -3.95 9.04 22.36 0.20 -3.75 16 16 C -0.06 -1.11 9.82 22.28 0.22 -0.89 16 17 C -0.08 -1.57 6.32 22.33 0.14 -1.43 16 18 Cl -0.07 -1.14 28.95 -2.72 -0.08 -1.22 16 19 C -0.07 -1.34 9.82 22.28 0.22 -1.12 16 20 C -0.16 -3.90 9.99 22.36 0.22 -3.67 16 21 C 0.03 1.05 5.85 45.00 0.26 1.31 16 22 C -0.17 -4.79 9.80 30.62 0.30 -4.49 16 23 C -0.18 -5.02 10.37 30.62 0.32 -4.70 16 24 H 0.27 16.42 8.31 -92.71 -0.77 15.65 16 25 H 0.12 2.87 7.07 -2.39 -0.02 2.85 16 26 H 0.11 2.84 7.64 -2.39 -0.02 2.82 16 27 H 0.16 2.37 6.30 -2.91 -0.02 2.35 16 28 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 29 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 30 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 31 H 0.16 3.31 6.99 -2.39 -0.02 3.29 16 32 H 0.07 2.76 6.48 -2.39 -0.02 2.74 16 33 H 0.13 2.67 8.14 -2.38 -0.02 2.65 16 34 H 0.14 2.48 8.14 -2.39 -0.02 2.47 16 35 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -78.48 310.90 4.81 -73.67 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.01 Total: 5.27 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 3.98 Total: -7.94 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -1.26 Total: -78.68 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -0.53 Total: -45.16 kcal Atomic # 14 Polarization: 52.38 SS G_CDS: 1.69 Total: 54.06 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -78.48 4.81 -73.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057552512.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.456 kcal (2) G-P(sol) polarization free energy of solvation -78.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds