Wall clock time and date at job start Tue Mar 31 2020 06:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34785 * 119.99677 * 2 1 4 4 O 1.21285 * 119.99847 * 359.97438 * 3 2 1 5 5 C 1.50692 * 119.99749 * 180.02562 * 3 2 1 6 6 O 1.45201 * 109.46848 * 180.02562 * 5 3 2 7 7 C 1.34796 * 117.00093 * 179.97438 * 6 5 3 8 8 O 1.21532 * 119.99745 * 359.97438 * 7 6 5 9 9 C 1.47280 * 119.99902 * 179.97438 * 7 6 5 10 10 C 1.39740 * 120.22116 * 0.02562 * 9 7 6 11 11 C 1.37777 * 119.92878 * 179.97438 * 10 9 7 12 12 C 1.38674 * 120.39353 * 0.02562 * 11 10 9 13 13 C 1.37911 * 120.45198 * 0.02562 * 12 11 10 14 14 C 1.39109 * 120.05100 * 359.97438 * 13 12 11 15 15 S 1.76208 * 120.19148 * 180.02562 * 14 13 12 16 16 C 1.76204 * 99.99858 * 6.85217 * 15 14 13 17 17 H 1.08003 * 119.99669 * 5.65116 * 16 15 14 18 18 C 1.38815 * 119.99891 * 185.65579 * 16 15 14 19 19 N 1.31545 * 119.99974 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00045 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47338 * 89.99573 * 20 18 16 22 22 H 1.48499 * 109.47145 * 210.00107 * 20 18 16 23 23 H 1.48507 * 109.47001 * 329.99995 * 20 18 16 24 24 H 1.08999 * 109.47087 * 60.00541 * 1 2 3 25 25 H 1.08998 * 109.46771 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46805 * 299.99568 * 1 2 3 27 27 H 0.96993 * 120.00657 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47799 * 60.00043 * 5 3 2 29 29 H 1.09004 * 109.47217 * 299.99428 * 5 3 2 30 30 H 1.07997 * 120.03821 * 0.24850 * 10 9 7 31 31 H 1.08001 * 119.80466 * 179.97438 * 11 10 9 32 32 H 1.08007 * 119.77547 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.97372 * 180.02562 * 13 12 11 34 34 H 0.96999 * 120.00045 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 -0.0006 6 8 4.1297 2.5363 0.0001 7 6 5.4660 2.7130 0.0003 8 8 6.2064 1.7493 0.0003 9 6 6.0288 4.0741 0.0004 10 6 5.1818 5.1855 0.0010 11 6 5.7148 6.4560 0.0017 12 6 7.0892 6.6402 0.0013 13 6 7.9399 5.5548 -0.0003 14 6 7.4219 4.2637 -0.0010 15 16 8.5055 2.8742 -0.0024 16 6 10.0523 3.6922 0.2046 17 1 10.0806 4.7576 0.3795 18 6 11.2346 2.9674 0.1428 19 7 12.3894 3.5781 0.2969 20 14 11.1857 1.1248 -0.1605 21 1 11.2387 0.8620 -1.6211 22 1 12.3504 0.4832 0.5005 23 1 9.9289 0.5644 0.3979 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9501 -0.8399 -0.0004 28 1 4.0089 0.6538 -0.8907 29 1 4.0095 0.6534 0.8892 30 1 4.1105 5.0487 0.0054 31 1 5.0582 7.3135 0.0017 32 1 7.4963 7.6407 0.0014 33 1 9.0091 5.7072 -0.0002 34 1 13.2155 3.0716 0.2540 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072738028.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:06 Heat of formation + Delta-G solvation = -87.242158 kcal Electronic energy + Delta-G solvation = -20442.221203 eV Core-core repulsion = 17045.912769 eV Total energy + Delta-G solvation = -3396.308434 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.39013 -39.46458 -37.94206 -36.00141 -34.85959 -32.79478 -31.09707 -30.45104 -29.52339 -26.23772 -25.98971 -23.69056 -22.09008 -20.96806 -20.65029 -18.44732 -17.65910 -17.35147 -16.59756 -16.56859 -15.96109 -15.64093 -15.19251 -15.16538 -14.40227 -14.14827 -13.79298 -13.62590 -13.42527 -12.94841 -12.73904 -12.64698 -12.40330 -12.08485 -11.92704 -11.39510 -11.25308 -10.96360 -10.63040 -10.59863 -10.32791 -10.07595 -9.77221 -9.51851 -9.49119 -8.90902 -8.51150 -8.45639 -6.91731 -6.55510 -4.28298 1.22482 1.91475 2.31246 2.33390 2.76590 3.04287 3.14175 3.28289 3.34123 3.40701 4.07189 4.29681 4.41668 4.52886 4.87566 4.88087 4.97899 4.98593 5.17715 5.20357 5.42010 5.45011 5.54798 5.82452 6.00251 6.06357 6.18752 6.49088 6.57805 6.76371 6.93916 7.03014 7.07701 7.42269 7.67849 7.89487 8.17764 8.27799 8.87593 10.51588 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.004369 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.622369 B = 6407.134762 C = 7935.320043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.736 5.736 3 C 0.515 3.485 4 O -0.515 6.515 5 C 0.049 3.951 6 O -0.335 6.335 7 C 0.501 3.499 8 O -0.487 6.487 9 C -0.161 4.161 10 C -0.040 4.040 11 C -0.181 4.181 12 C -0.066 4.066 13 C -0.149 4.149 14 C -0.026 4.026 15 S 0.083 5.917 16 C -0.577 4.577 17 H 0.108 0.892 18 C 0.104 3.896 19 N -0.859 5.859 20 Si 0.850 3.150 21 H -0.262 1.262 22 H -0.268 1.268 23 H -0.235 1.235 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.404 0.596 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.149 0.851 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.303 -5.569 -0.832 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.390 5.390 3 C 0.300 3.700 4 O -0.389 6.389 5 C -0.029 4.029 6 O -0.252 6.252 7 C 0.347 3.653 8 O -0.377 6.377 9 C -0.173 4.173 10 C -0.059 4.059 11 C -0.204 4.204 12 C -0.088 4.088 13 C -0.173 4.173 14 C -0.145 4.145 15 S 0.344 5.656 16 C -0.723 4.723 17 H 0.126 0.874 18 C -0.108 4.108 19 N -0.492 5.492 20 Si 0.674 3.326 21 H -0.187 1.187 22 H -0.193 1.193 23 H -0.159 1.159 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.238 0.762 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.147 0.853 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.167 0.833 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.251 -6.538 -0.924 19.409 hybrid contribution 0.776 0.052 -0.004 0.778 sum -17.475 -6.486 -0.928 18.663 Atomic orbital electron populations 1.21549 0.78898 1.02368 1.02580 1.45629 1.07969 1.08415 1.77001 1.20235 0.89180 0.84093 0.76458 1.90752 1.69950 1.31030 1.47171 1.22514 0.91284 0.83940 1.05118 1.86619 1.24938 1.28128 1.85515 1.21251 0.79472 0.90492 0.74105 1.90825 1.58885 1.41929 1.46045 1.18283 0.91863 0.89351 1.17839 1.21187 0.99103 0.91604 0.94028 1.20824 0.95088 0.96496 1.08029 1.21233 0.93431 0.98413 0.95742 1.21530 1.01657 0.90683 1.03438 1.22494 0.95009 0.99859 0.97096 1.83993 0.97823 1.05390 1.78353 1.23469 0.91635 1.00165 1.57064 0.87412 1.24816 0.94287 0.99137 0.92543 1.69896 0.97728 1.37057 1.44544 0.86871 0.80668 0.84674 0.80395 1.18664 1.19251 1.15869 0.92049 0.90424 0.92035 0.76175 0.88161 0.88144 0.85268 0.86375 0.86322 0.83337 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.70 59.85 0.64 1.21 16 2 N -0.74 -5.67 5.71 -67.08 -0.38 -6.05 16 3 C 0.52 6.20 7.91 -10.99 -0.09 6.11 16 4 O -0.52 -8.41 16.50 -14.11 -0.23 -8.64 16 5 C 0.05 0.61 5.96 36.00 0.21 0.82 16 6 O -0.34 -5.58 9.01 -47.44 -0.43 -6.01 16 7 C 0.50 9.61 7.87 34.41 0.27 9.88 16 8 O -0.49 -10.21 13.57 -19.29 -0.26 -10.47 16 9 C -0.16 -3.20 5.89 -104.77 -0.62 -3.82 16 10 C -0.04 -0.67 9.61 -39.19 -0.38 -1.05 16 11 C -0.18 -2.83 10.02 -39.59 -0.40 -3.23 16 12 C -0.07 -1.12 10.03 -39.54 -0.40 -1.51 16 13 C -0.15 -3.07 9.22 -39.38 -0.36 -3.43 16 14 C -0.03 -0.58 6.15 -38.37 -0.24 -0.81 16 15 S 0.08 2.05 16.54 -107.50 -1.78 0.27 16 16 C -0.58 -15.83 9.54 30.95 0.30 -15.53 16 17 H 0.11 3.05 5.21 -52.48 -0.27 2.77 16 18 C 0.10 2.86 5.50 -17.46 -0.10 2.77 16 19 N -0.86 -24.53 13.96 55.49 0.77 -23.75 16 20 Si 0.85 20.24 27.74 -169.99 -4.71 15.53 16 21 H -0.26 -6.14 7.11 56.52 0.40 -5.73 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.23 -5.55 6.74 56.52 0.38 -5.17 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.40 1.81 8.83 -40.82 -0.36 1.45 16 28 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.13 1.98 7.61 -52.49 -0.40 1.59 16 31 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.15 3.29 5.03 -52.49 -0.26 3.03 16 34 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 314.18 15.07 4.73 4.73 Total: -1.00 -33.54 314.18 -6.85 -40.38 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -3.41 Total: 2.59 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -1.15 Total: -8.59 kcal Atomic # 7 Polarization: -30.20 SS G_CDS: 0.39 Total: -29.80 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.92 Total: -25.11 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.71 Total: 15.53 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -1.78 Total: 0.27 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.54 -6.85 -40.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072738028.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.859 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds