Wall clock time and date at job start Tue Mar 31 2020 06:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34785 * 119.99677 * 2 1 4 4 O 1.21285 * 119.99847 * 359.97438 * 3 2 1 5 5 C 1.50692 * 119.99749 * 180.02562 * 3 2 1 6 6 O 1.45201 * 109.46848 * 180.02562 * 5 3 2 7 7 C 1.34796 * 117.00093 * 179.97438 * 6 5 3 8 8 O 1.21532 * 119.99745 * 359.97438 * 7 6 5 9 9 C 1.47280 * 119.99902 * 179.97438 * 7 6 5 10 10 C 1.39740 * 120.22116 * 0.02562 * 9 7 6 11 11 C 1.37777 * 119.92878 * 179.97438 * 10 9 7 12 12 C 1.38674 * 120.39353 * 0.02562 * 11 10 9 13 13 C 1.37911 * 120.45198 * 0.02562 * 12 11 10 14 14 C 1.39109 * 120.05100 * 359.97438 * 13 12 11 15 15 S 1.76208 * 120.19148 * 180.02562 * 14 13 12 16 16 C 1.76204 * 99.99858 * 6.85217 * 15 14 13 17 17 H 1.08003 * 119.99669 * 5.65116 * 16 15 14 18 18 C 1.38815 * 119.99891 * 185.65579 * 16 15 14 19 19 N 1.31545 * 119.99974 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00045 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47338 * 89.99573 * 20 18 16 22 22 H 1.48499 * 109.47145 * 210.00107 * 20 18 16 23 23 H 1.48507 * 109.47001 * 329.99995 * 20 18 16 24 24 H 1.08999 * 109.47087 * 60.00541 * 1 2 3 25 25 H 1.08998 * 109.46771 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46805 * 299.99568 * 1 2 3 27 27 H 0.96993 * 120.00657 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47799 * 60.00043 * 5 3 2 29 29 H 1.09004 * 109.47217 * 299.99428 * 5 3 2 30 30 H 1.07997 * 120.03821 * 0.24850 * 10 9 7 31 31 H 1.08001 * 119.80466 * 179.97438 * 11 10 9 32 32 H 1.08007 * 119.77547 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.97372 * 180.02562 * 13 12 11 34 34 H 0.96999 * 120.00045 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 -0.0006 6 8 4.1297 2.5363 0.0001 7 6 5.4660 2.7130 0.0003 8 8 6.2064 1.7493 0.0003 9 6 6.0288 4.0741 0.0004 10 6 5.1818 5.1855 0.0010 11 6 5.7148 6.4560 0.0017 12 6 7.0892 6.6402 0.0013 13 6 7.9399 5.5548 -0.0003 14 6 7.4219 4.2637 -0.0010 15 16 8.5055 2.8742 -0.0024 16 6 10.0523 3.6922 0.2046 17 1 10.0806 4.7576 0.3795 18 6 11.2346 2.9674 0.1428 19 7 12.3894 3.5781 0.2969 20 14 11.1857 1.1248 -0.1605 21 1 11.2387 0.8620 -1.6211 22 1 12.3504 0.4832 0.5005 23 1 9.9289 0.5644 0.3979 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9501 -0.8399 -0.0004 28 1 4.0089 0.6538 -0.8907 29 1 4.0095 0.6534 0.8892 30 1 4.1105 5.0487 0.0054 31 1 5.0582 7.3135 0.0017 32 1 7.4963 7.6407 0.0014 33 1 9.0091 5.7072 -0.0002 34 1 13.2155 3.0716 0.2540 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072738028.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:06 Heat of formation + Delta-G solvation = -110.038736 kcal Electronic energy + Delta-G solvation = -20443.209737 eV Core-core repulsion = 17045.912769 eV Total energy + Delta-G solvation = -3397.296968 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.70942 -40.56162 -39.40092 -37.40341 -35.69453 -34.83759 -32.55342 -31.96461 -30.52411 -28.01935 -27.03709 -25.08035 -23.58967 -22.22954 -21.75204 -20.10431 -19.04210 -18.61195 -17.95496 -17.76934 -17.43079 -17.02240 -16.67529 -16.24170 -15.78663 -15.65588 -15.18273 -14.93194 -14.63123 -14.50240 -13.88060 -13.85829 -13.62188 -13.46855 -13.12804 -13.11699 -13.08069 -12.53456 -12.28572 -11.96432 -11.87813 -11.51490 -11.35877 -11.12138 -10.64390 -10.32182 -10.23184 -9.98777 -8.75350 -8.60338 -6.34334 -0.26964 0.41564 0.95958 1.21794 1.25280 1.40082 1.40151 1.56302 1.57395 2.14811 2.38009 2.59361 2.74837 2.87461 3.61282 3.77121 3.98721 4.05566 4.09675 4.19460 4.46194 4.51250 4.56179 4.63080 4.68895 4.95616 5.02751 5.15728 5.31283 5.31753 5.45233 5.55983 5.65025 5.98649 6.16152 6.37850 6.71764 6.82331 7.09015 8.50656 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.004369 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.622369 B = 6407.134762 C = 7935.320043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.715 5.715 3 C 0.517 3.483 4 O -0.565 6.565 5 C 0.041 3.959 6 O -0.338 6.338 7 C 0.506 3.494 8 O -0.508 6.508 9 C -0.167 4.167 10 C -0.037 4.037 11 C -0.153 4.153 12 C -0.055 4.055 13 C -0.170 4.170 14 C -0.045 4.045 15 S 0.035 5.965 16 C -0.586 4.586 17 H 0.083 0.917 18 C 0.054 3.946 19 N -0.904 5.904 20 Si 0.906 3.094 21 H -0.257 1.257 22 H -0.253 1.253 23 H -0.235 1.235 24 H 0.052 0.948 25 H 0.117 0.883 26 H 0.052 0.948 27 H 0.423 0.577 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.154 0.846 31 H 0.168 0.832 32 H 0.155 0.845 33 H 0.123 0.877 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.512 -5.774 -1.033 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.369 5.369 3 C 0.303 3.697 4 O -0.443 6.443 5 C -0.036 4.036 6 O -0.254 6.254 7 C 0.352 3.648 8 O -0.399 6.399 9 C -0.178 4.178 10 C -0.057 4.057 11 C -0.175 4.175 12 C -0.076 4.076 13 C -0.194 4.194 14 C -0.162 4.162 15 S 0.291 5.709 16 C -0.732 4.732 17 H 0.101 0.899 18 C -0.153 4.153 19 N -0.540 5.540 20 Si 0.727 3.273 21 H -0.181 1.181 22 H -0.177 1.177 23 H -0.159 1.159 24 H 0.071 0.929 25 H 0.135 0.865 26 H 0.071 0.929 27 H 0.260 0.740 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.171 0.829 31 H 0.185 0.815 32 H 0.173 0.827 33 H 0.140 0.860 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.536 -6.750 -1.124 22.597 hybrid contribution 1.367 0.292 0.060 1.399 sum -20.169 -6.458 -1.065 21.204 Atomic orbital electron populations 1.21751 0.77628 1.04711 1.01764 1.45545 1.08754 1.07939 1.74680 1.20202 0.88860 0.84558 0.76113 1.90732 1.70632 1.32873 1.50051 1.22903 0.91759 0.82001 1.06931 1.86571 1.23106 1.30911 1.84829 1.21173 0.80218 0.90029 0.73341 1.90810 1.59669 1.42527 1.46907 1.18603 0.91269 0.91064 1.16866 1.21548 0.99956 0.91247 0.92900 1.21407 0.94928 0.97489 1.03665 1.21641 0.93777 0.98793 0.93412 1.21482 1.01181 0.91616 1.05139 1.22492 0.95474 0.99178 0.99039 1.83805 0.97273 1.07335 1.82456 1.23580 0.93336 0.99381 1.56948 0.89893 1.25611 0.93923 1.03276 0.92457 1.69976 0.98411 1.38764 1.46848 0.86033 0.80917 0.79813 0.80550 1.18085 1.17727 1.15888 0.92878 0.86503 0.92887 0.74023 0.86340 0.86411 0.82883 0.81463 0.82731 0.85962 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.70 127.77 1.37 2.22 16 2 N -0.71 -9.08 5.71 -484.51 -2.77 -11.85 16 3 C 0.52 11.45 7.91 87.65 0.69 12.14 16 4 O -0.56 -17.73 16.50 15.76 0.26 -17.47 16 5 C 0.04 0.93 5.96 71.23 0.42 1.35 16 6 O -0.34 -10.67 9.01 -50.68 -0.46 -11.12 16 7 C 0.51 18.94 7.87 70.20 0.55 19.49 16 8 O -0.51 -21.19 13.57 19.73 0.27 -20.92 16 9 C -0.17 -6.44 5.89 -19.96 -0.12 -6.56 16 10 C -0.04 -1.13 9.61 22.52 0.22 -0.92 16 11 C -0.15 -4.04 10.02 22.26 0.22 -3.82 16 12 C -0.06 -1.70 10.03 22.30 0.22 -1.48 16 13 C -0.17 -7.04 9.22 22.40 0.21 -6.84 16 14 C -0.04 -2.01 6.15 23.05 0.14 -1.87 16 15 S 0.03 1.78 16.54 -56.49 -0.93 0.84 16 16 C -0.59 -33.93 9.54 67.96 0.65 -33.28 16 17 H 0.08 5.05 5.21 -2.91 -0.02 5.03 16 18 C 0.05 3.13 5.50 84.87 0.47 3.59 16 19 N -0.90 -53.95 13.96 21.65 0.30 -53.65 16 20 Si 0.91 43.10 27.74 68.60 1.90 45.00 16 21 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.25 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.24 -11.08 6.74 99.48 0.67 -10.41 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.42 2.37 8.83 -92.71 -0.82 1.55 16 28 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.12 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.15 4.04 7.61 -2.91 -0.02 4.02 16 31 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 33 H 0.12 5.75 5.03 -2.91 -0.01 5.73 16 34 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -77.54 314.18 3.92 -73.62 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.30 Total: 11.50 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 5.05 Total: -15.96 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -2.47 Total: -65.50 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: 0.07 Total: -49.51 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.90 Total: 45.00 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -0.93 Total: 0.84 kcal Total: -77.54 3.92 -73.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072738028.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.415 kcal (2) G-P(sol) polarization free energy of solvation -77.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds