Wall clock time and date at job start Tue Mar 31 2020 07:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99803 * 2 1 4 4 H 1.48502 * 109.47188 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47178 * 120.00324 * 3 2 1 6 6 H 1.48501 * 109.47244 * 240.00206 * 3 2 1 7 7 C 1.37871 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99650 * 185.68697 * 7 2 1 9 9 C 1.50700 * 120.00376 * 5.68820 * 7 2 1 10 10 C 1.52995 * 115.55137 * 275.22203 * 9 7 2 11 11 O 1.45208 * 109.46803 * 301.35772 * 10 9 7 12 12 C 1.34714 * 116.99854 * 184.90270 * 11 10 9 13 13 O 1.21480 * 120.00439 * 5.08935 * 12 11 10 14 14 C 1.47663 * 119.99959 * 185.08898 * 12 11 10 15 15 C 1.39604 * 120.12767 * 5.35128 * 14 12 11 16 16 C 1.38561 * 119.78223 * 179.74730 * 15 14 12 17 17 N 1.39777 * 119.98162 * 180.22846 * 16 15 14 18 18 C 1.39055 * 120.03547 * 0.52608 * 16 15 14 19 19 C 1.38173 * 120.25300 * 359.72420 * 18 16 15 20 20 C 1.38160 * 120.21689 * 0.02562 * 19 18 16 21 21 Cl 1.73601 * 120.01542 * 179.97438 * 20 19 18 22 22 C 1.53001 * 117.49901 * 129.54499 * 9 7 2 23 23 C 1.53002 * 117.49642 * 60.88812 * 9 7 2 24 24 H 0.96998 * 120.00125 * 175.11965 * 1 2 3 25 25 H 1.08992 * 109.47420 * 61.35887 * 10 9 7 26 26 H 1.08997 * 109.47517 * 181.36469 * 10 9 7 27 27 H 1.08002 * 120.10682 * 359.97156 * 15 14 12 28 28 H 0.96996 * 119.99739 * 180.29842 * 17 16 15 29 29 H 0.97000 * 120.00071 * 0.29967 * 17 16 15 30 30 H 1.07992 * 119.87174 * 179.70078 * 18 16 15 31 31 H 1.07994 * 119.88774 * 179.97438 * 19 18 16 32 32 H 1.09005 * 117.50087 * 0.02562 * 22 9 7 33 33 H 1.09001 * 117.50024 * 145.02505 * 22 9 7 34 34 H 1.08999 * 117.50192 * 214.98054 * 23 9 7 35 35 H 1.09004 * 117.49943 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0806 -1.1963 0.0922 9 6 1.2567 -2.4959 -0.1305 10 6 0.7026 -3.0717 1.1742 11 8 1.7926 -3.2887 2.1088 12 6 1.4875 -3.8894 3.2754 13 8 0.3627 -4.3058 3.4683 14 6 2.5203 -4.0415 4.3197 15 6 3.7808 -3.4668 4.1476 16 6 4.7429 -3.6096 5.1345 17 7 6.0048 -3.0318 4.9687 18 6 4.4557 -4.3327 6.2871 19 6 3.2103 -4.9066 6.4566 20 6 2.2415 -4.7664 5.4816 21 17 0.6788 -5.4902 5.6997 22 6 1.7424 -3.4869 -1.1901 23 6 0.4374 -2.7159 -1.4038 24 1 -0.4850 -0.8370 -0.0715 25 1 -0.0121 -2.3712 1.6060 26 1 0.2047 -4.0196 0.9705 27 1 4.0042 -2.9096 3.2498 28 1 6.6799 -3.1353 5.6575 29 1 6.2054 -2.5273 4.1648 30 1 5.2091 -4.4464 7.0524 31 1 2.9938 -5.4672 7.3538 32 1 2.6032 -3.1975 -1.7930 33 1 1.6669 -4.5492 -0.9579 34 1 -0.4960 -3.2712 -1.3121 35 1 0.4391 -1.9188 -2.1474 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088256782.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:33 Heat of formation + Delta-G solvation = -39.666762 kcal Electronic energy + Delta-G solvation = -21073.912480 eV Core-core repulsion = 17677.623364 eV Total energy + Delta-G solvation = -3396.289116 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.15912 -38.91932 -37.02235 -36.35599 -35.27609 -34.30433 -31.90945 -31.51809 -28.55850 -27.05907 -24.89259 -24.06976 -22.42385 -21.38062 -20.50116 -19.53820 -17.89497 -17.26736 -16.80055 -16.41611 -16.12513 -15.61835 -15.23778 -14.40084 -14.14156 -13.90091 -13.75457 -13.65636 -13.08400 -12.65678 -12.42705 -12.15347 -11.96438 -11.80965 -11.65685 -11.12323 -10.90091 -10.82631 -10.51640 -10.23912 -10.13284 -9.96746 -9.75704 -9.44349 -9.18036 -8.56496 -8.49142 -8.38449 -7.65817 -6.37449 -4.11244 0.71238 1.26406 2.33625 2.87585 3.18499 3.41033 3.42250 3.61508 3.66221 3.76550 4.48854 4.61871 4.78570 5.00162 5.19182 5.25900 5.29517 5.36966 5.74126 5.80870 5.86862 6.03683 6.04940 6.11100 6.16000 6.31221 6.43508 6.46642 6.54421 6.78761 7.01043 7.17201 7.21955 7.26110 7.55484 8.18434 8.35980 8.39512 8.83828 9.62574 11.01568 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.005022 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.304743 B = 5573.964949 C = 6564.000456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.025 3.975 3 Si 1.067 2.933 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.563 4.563 8 H 0.055 0.945 9 C 0.014 3.986 10 C 0.114 3.886 11 O -0.326 6.326 12 C 0.491 3.509 13 O -0.495 6.495 14 C -0.059 4.059 15 C -0.126 4.126 16 C 0.207 3.793 17 N -0.874 5.874 18 C -0.162 4.162 19 C -0.077 4.077 20 C -0.043 4.043 21 Cl -0.045 7.045 22 C -0.191 4.191 23 C -0.168 4.168 24 H 0.273 0.727 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.151 0.849 28 H 0.399 0.601 29 H 0.404 0.596 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.241 -8.391 11.544 17.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.180 4.180 3 Si 0.896 3.104 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.600 4.600 8 H 0.073 0.927 9 C 0.014 3.986 10 C 0.040 3.960 11 O -0.241 6.241 12 C 0.334 3.666 13 O -0.385 6.385 14 C -0.062 4.062 15 C -0.149 4.149 16 C 0.102 3.898 17 N -0.413 5.413 18 C -0.185 4.185 19 C -0.096 4.096 20 C -0.073 4.073 21 Cl -0.015 7.015 22 C -0.228 4.228 23 C -0.206 4.206 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.168 0.832 28 H 0.227 0.773 29 H 0.233 0.767 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.506 -6.927 11.621 16.535 hybrid contribution 0.254 -1.620 -0.120 1.644 sum 9.760 -8.547 11.501 17.337 Atomic orbital electron populations 1.70757 1.06781 1.31459 1.45041 1.25814 0.96552 1.02350 0.93330 0.83568 0.74953 0.75406 0.76518 1.20778 1.21448 1.21395 1.21171 0.94127 0.89198 1.55528 0.92652 1.19061 0.99374 0.95784 0.84414 1.22884 0.86379 0.97986 0.88737 1.86583 1.41701 1.70140 1.25667 1.20997 0.87065 0.76001 0.82536 1.90868 1.22234 1.45797 1.79564 1.18798 0.93656 1.00687 0.93025 1.21022 0.91240 1.02488 1.00125 1.17714 0.86327 0.92430 0.93359 1.42474 1.11872 1.61255 1.25710 1.20685 0.97650 1.02411 0.97798 1.20677 0.91596 0.99358 0.97985 1.20706 0.89274 1.01586 0.95698 1.98389 1.25246 1.81198 1.96716 1.22912 0.97936 0.95625 1.06309 1.22791 0.93274 1.02365 1.02173 0.91558 0.91461 0.93811 0.83174 0.77293 0.76715 0.85008 0.84390 0.89789 0.91297 0.91217 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.49 13.57 55.43 0.75 -25.74 16 2 C 0.02 0.69 5.39 -17.82 -0.10 0.59 16 3 Si 1.07 24.51 29.91 -169.99 -5.08 19.43 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.56 -15.29 8.65 -34.44 -0.30 -15.59 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.01 0.35 1.22 -155.66 -0.19 0.16 16 10 C 0.11 2.70 5.36 37.16 0.20 2.90 16 11 O -0.33 -7.32 9.30 -40.53 -0.38 -7.70 16 12 C 0.49 10.09 7.87 34.58 0.27 10.36 16 13 O -0.50 -10.91 13.69 -19.25 -0.26 -11.17 16 14 C -0.06 -1.00 5.87 -104.97 -0.62 -1.61 16 15 C -0.13 -1.83 9.46 -38.95 -0.37 -2.20 16 16 C 0.21 2.33 6.75 -83.81 -0.57 1.77 16 17 N -0.87 -7.03 9.09 32.39 0.29 -6.73 16 18 C -0.16 -1.61 9.88 -39.30 -0.39 -2.00 16 19 C -0.08 -0.87 9.81 -39.63 -0.39 -1.26 16 20 C -0.04 -0.65 6.35 -39.05 -0.25 -0.90 16 21 Cl -0.04 -0.70 26.02 -51.86 -1.35 -2.05 16 22 C -0.19 -4.13 9.94 -26.69 -0.27 -4.39 16 23 C -0.17 -3.83 8.66 -26.69 -0.23 -4.06 16 24 H 0.27 7.93 6.19 -40.82 -0.25 7.67 16 25 H 0.07 1.73 7.88 -51.93 -0.41 1.32 16 26 H 0.04 0.98 7.94 -51.93 -0.41 0.57 16 27 H 0.15 2.28 7.62 -52.49 -0.40 1.88 16 28 H 0.40 2.15 8.84 -40.82 -0.36 1.79 16 29 H 0.40 3.03 8.84 -40.82 -0.36 2.67 16 30 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 LS Contribution 321.93 15.07 4.85 4.85 Total: -1.00 -31.70 321.93 -8.30 -40.00 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -3.94 Total: 5.34 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -3.18 Total: -16.23 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 1.05 Total: -32.47 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.64 Total: -18.87 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.08 Total: 19.43 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.35 Total: -2.05 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.70 -8.30 -40.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256782.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.336 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds