Wall clock time and date at job start Tue Mar 31 2020 07:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99803 * 2 1 4 4 H 1.48502 * 109.47188 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47178 * 120.00324 * 3 2 1 6 6 H 1.48501 * 109.47244 * 240.00206 * 3 2 1 7 7 C 1.37871 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99650 * 185.68697 * 7 2 1 9 9 C 1.50700 * 120.00376 * 5.68820 * 7 2 1 10 10 C 1.52995 * 115.55137 * 275.22203 * 9 7 2 11 11 O 1.45208 * 109.46803 * 301.35772 * 10 9 7 12 12 C 1.34714 * 116.99854 * 184.90270 * 11 10 9 13 13 O 1.21480 * 120.00439 * 5.08935 * 12 11 10 14 14 C 1.47663 * 119.99959 * 185.08898 * 12 11 10 15 15 C 1.39604 * 120.12767 * 5.35128 * 14 12 11 16 16 C 1.38561 * 119.78223 * 179.74730 * 15 14 12 17 17 N 1.39777 * 119.98162 * 180.22846 * 16 15 14 18 18 C 1.39055 * 120.03547 * 0.52608 * 16 15 14 19 19 C 1.38173 * 120.25300 * 359.72420 * 18 16 15 20 20 C 1.38160 * 120.21689 * 0.02562 * 19 18 16 21 21 Cl 1.73601 * 120.01542 * 179.97438 * 20 19 18 22 22 C 1.53001 * 117.49901 * 129.54499 * 9 7 2 23 23 C 1.53002 * 117.49642 * 60.88812 * 9 7 2 24 24 H 0.96998 * 120.00125 * 175.11965 * 1 2 3 25 25 H 1.08992 * 109.47420 * 61.35887 * 10 9 7 26 26 H 1.08997 * 109.47517 * 181.36469 * 10 9 7 27 27 H 1.08002 * 120.10682 * 359.97156 * 15 14 12 28 28 H 0.96996 * 119.99739 * 180.29842 * 17 16 15 29 29 H 0.97000 * 120.00071 * 0.29967 * 17 16 15 30 30 H 1.07992 * 119.87174 * 179.70078 * 18 16 15 31 31 H 1.07994 * 119.88774 * 179.97438 * 19 18 16 32 32 H 1.09005 * 117.50087 * 0.02562 * 22 9 7 33 33 H 1.09001 * 117.50024 * 145.02505 * 22 9 7 34 34 H 1.08999 * 117.50192 * 214.98054 * 23 9 7 35 35 H 1.09004 * 117.49943 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0806 -1.1963 0.0922 9 6 1.2567 -2.4959 -0.1305 10 6 0.7026 -3.0717 1.1742 11 8 1.7926 -3.2887 2.1088 12 6 1.4875 -3.8894 3.2754 13 8 0.3627 -4.3058 3.4683 14 6 2.5203 -4.0415 4.3197 15 6 3.7808 -3.4668 4.1476 16 6 4.7429 -3.6096 5.1345 17 7 6.0048 -3.0318 4.9687 18 6 4.4557 -4.3327 6.2871 19 6 3.2103 -4.9066 6.4566 20 6 2.2415 -4.7664 5.4816 21 17 0.6788 -5.4902 5.6997 22 6 1.7424 -3.4869 -1.1901 23 6 0.4374 -2.7159 -1.4038 24 1 -0.4850 -0.8370 -0.0715 25 1 -0.0121 -2.3712 1.6060 26 1 0.2047 -4.0196 0.9705 27 1 4.0042 -2.9096 3.2498 28 1 6.6799 -3.1353 5.6575 29 1 6.2054 -2.5273 4.1648 30 1 5.2091 -4.4464 7.0524 31 1 2.9938 -5.4672 7.3538 32 1 2.6032 -3.1975 -1.7930 33 1 1.6669 -4.5492 -0.9579 34 1 -0.4960 -3.2712 -1.3121 35 1 0.4391 -1.9188 -2.1474 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088256782.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:32 Heat of formation + Delta-G solvation = -58.409585 kcal Electronic energy + Delta-G solvation = -21074.725230 eV Core-core repulsion = 17677.623364 eV Total energy + Delta-G solvation = -3397.101866 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.60272 -40.14626 -38.80878 -37.53276 -36.96601 -35.21938 -33.98808 -32.59439 -29.49284 -28.82739 -26.96393 -25.34730 -23.49527 -23.13775 -21.83672 -21.50654 -19.21390 -18.88031 -18.17341 -17.52575 -17.37152 -17.31011 -16.52767 -15.81128 -15.60945 -15.36634 -15.13247 -14.84292 -14.70324 -14.47403 -13.87778 -13.79922 -13.27852 -13.06951 -12.86420 -12.64713 -12.63725 -12.41837 -12.29193 -11.95089 -11.78456 -11.54875 -11.22759 -10.96830 -10.52392 -10.48452 -10.37878 -10.20325 -8.55829 -8.53629 -6.29689 -0.43790 0.28964 1.21990 1.48996 1.54240 1.61567 1.67199 1.80813 2.58754 2.66204 2.88209 3.17231 3.20458 3.54969 3.77227 3.95508 4.09962 4.17645 4.21895 4.26290 4.34168 4.43230 4.59139 4.76712 4.80221 4.90686 4.95166 5.10244 5.14859 5.19707 5.38163 5.49475 5.55319 6.12760 6.21799 6.44149 6.65084 6.73170 6.97181 7.51549 8.84151 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.005022 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.304743 B = 5573.964949 C = 6564.000456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.022 4.022 3 Si 1.110 2.890 4 H -0.288 1.288 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.569 4.569 8 H 0.048 0.952 9 C -0.021 4.021 10 C 0.126 3.874 11 O -0.337 6.337 12 C 0.484 3.516 13 O -0.519 6.519 14 C -0.088 4.088 15 C -0.144 4.144 16 C 0.216 3.784 17 N -0.858 5.858 18 C -0.141 4.141 19 C -0.066 4.066 20 C -0.061 4.061 21 Cl -0.063 7.063 22 C -0.166 4.166 23 C -0.165 4.165 24 H 0.263 0.737 25 H 0.034 0.966 26 H 0.053 0.947 27 H 0.134 0.866 28 H 0.416 0.584 29 H 0.408 0.592 30 H 0.179 0.821 31 H 0.170 0.830 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.150 -8.924 13.222 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.221 4.221 3 Si 0.932 3.068 4 H -0.213 1.213 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.607 4.607 8 H 0.066 0.934 9 C -0.021 4.021 10 C 0.052 3.948 11 O -0.253 6.253 12 C 0.330 3.670 13 O -0.410 6.410 14 C -0.090 4.090 15 C -0.167 4.167 16 C 0.108 3.892 17 N -0.398 5.398 18 C -0.163 4.163 19 C -0.085 4.085 20 C -0.090 4.090 21 Cl -0.034 7.034 22 C -0.203 4.203 23 C -0.202 4.202 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.152 0.848 28 H 0.248 0.752 29 H 0.237 0.763 30 H 0.196 0.804 31 H 0.188 0.812 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.472 -7.476 13.306 19.710 hybrid contribution -0.516 -1.506 -0.556 1.686 sum 11.956 -8.982 12.750 19.652 Atomic orbital electron populations 1.70863 1.07748 1.30917 1.47459 1.27133 0.96594 1.05823 0.92597 0.83031 0.74238 0.71642 0.77889 1.21346 1.19812 1.19308 1.21426 0.93990 0.90578 1.54689 0.93351 1.19152 1.01239 0.96289 0.85449 1.22542 0.86252 0.97398 0.88642 1.86587 1.41215 1.70882 1.26591 1.21799 0.87941 0.74901 0.82392 1.90835 1.23466 1.46907 1.79825 1.18711 0.93698 1.03691 0.92929 1.20905 0.91523 1.03331 1.00946 1.17769 0.86597 0.91983 0.92805 1.42482 1.10949 1.59981 1.26345 1.21180 0.97792 0.99706 0.97651 1.21075 0.90983 0.98657 0.97759 1.20928 0.89479 1.02360 0.96239 1.98376 1.26820 1.81475 1.96705 1.22937 0.97298 0.96226 1.03813 1.22731 0.94622 1.02312 1.00547 0.92686 0.94709 0.92902 0.84824 0.75235 0.76295 0.80411 0.81230 0.89289 0.89015 0.89621 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.57 21.45 0.29 -55.89 16 2 C -0.02 -1.24 5.39 84.65 0.46 -0.79 16 3 Si 1.11 49.50 29.91 68.60 2.05 51.55 16 4 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.57 -31.49 8.65 25.60 0.22 -31.27 16 8 H 0.05 2.67 7.82 -2.91 -0.02 2.64 16 9 C -0.02 -1.04 1.22 -52.93 -0.06 -1.11 16 10 C 0.13 6.20 5.36 71.98 0.39 6.59 16 11 O -0.34 -15.79 9.30 -56.24 -0.52 -16.31 16 12 C 0.48 20.75 7.87 70.31 0.55 21.31 16 13 O -0.52 -23.94 13.69 19.90 0.27 -23.66 16 14 C -0.09 -2.99 5.87 -20.09 -0.12 -3.11 16 15 C -0.14 -4.12 9.46 22.68 0.21 -3.90 16 16 C 0.22 4.22 6.75 38.15 0.26 4.48 16 17 N -0.86 -10.73 9.09 -51.43 -0.47 -11.20 16 18 C -0.14 -2.14 9.88 22.45 0.22 -1.92 16 19 C -0.07 -1.26 9.81 22.24 0.22 -1.05 16 20 C -0.06 -1.76 6.35 22.62 0.14 -1.62 16 21 Cl -0.06 -1.99 26.02 -2.72 -0.07 -2.06 16 22 C -0.17 -7.06 9.94 30.62 0.30 -6.75 16 23 C -0.16 -7.53 8.66 30.62 0.27 -7.27 16 24 H 0.26 15.88 6.19 -92.71 -0.57 15.31 16 25 H 0.03 1.90 7.88 -2.39 -0.02 1.88 16 26 H 0.05 2.45 7.94 -2.39 -0.02 2.43 16 27 H 0.13 4.17 7.62 -2.91 -0.02 4.15 16 28 H 0.42 2.53 8.84 -92.71 -0.82 1.71 16 29 H 0.41 5.02 8.84 -92.71 -0.82 4.20 16 30 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 31 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.09 3.68 8.14 -2.38 -0.02 3.66 16 33 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 34 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 35 H 0.07 3.62 8.14 -2.38 -0.02 3.60 16 Total: -1.00 -71.65 321.93 4.31 -67.34 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -0.30 Total: 16.65 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 3.06 Total: -26.41 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: -0.18 Total: -67.09 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.25 Total: -39.98 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.05 Total: 51.55 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.07 Total: -2.06 kcal Total: -71.65 4.31 -67.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256782.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.926 kcal (2) G-P(sol) polarization free energy of solvation -71.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds