Wall clock time and date at job start Tue Mar 31 2020 07:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99846 * 2 1 4 4 H 1.48491 * 109.47095 * 239.99909 * 3 2 1 5 5 H 1.48504 * 109.46800 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47366 * 119.99554 * 3 2 1 7 7 C 1.37872 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00133 * 170.69531 * 7 2 1 9 9 C 1.50704 * 119.99995 * 350.70989 * 7 2 1 10 10 C 1.53005 * 115.54735 * 324.73308 * 9 7 2 11 11 O 1.45194 * 109.47196 * 306.89109 * 10 9 7 12 12 C 1.34770 * 116.99865 * 184.70591 * 11 10 9 13 13 O 1.21523 * 120.00374 * 355.88661 * 12 11 10 14 14 C 1.47300 * 119.99986 * 176.15518 * 12 11 10 15 15 C 1.39892 * 120.08639 * 2.51366 * 14 12 11 16 16 C 1.36542 * 120.06151 * 179.76431 * 15 14 12 17 17 C 1.39278 * 120.24181 * 0.50960 * 16 15 14 18 18 N 1.39017 * 119.91852 * 179.71932 * 17 16 15 19 19 C 1.39168 * 120.17065 * 359.74674 * 17 16 15 20 20 C 1.37816 * 119.93281 * 359.97438 * 19 17 16 21 21 Cl 1.73600 * 120.11759 * 179.97438 * 20 19 17 22 22 C 1.52998 * 117.50214 * 110.40978 * 9 7 2 23 23 C 1.53002 * 117.50090 * 179.07107 * 9 7 2 24 24 H 0.96994 * 120.00586 * 5.03370 * 1 2 3 25 25 H 1.08993 * 109.47274 * 186.88432 * 10 9 7 26 26 H 1.09004 * 109.46715 * 66.89054 * 10 9 7 27 27 H 1.07998 * 119.96726 * 0.02562 * 15 14 12 28 28 H 1.08001 * 119.88140 * 180.25814 * 16 15 14 29 29 H 0.96997 * 120.00179 * 180.02562 * 18 17 16 30 30 H 0.96997 * 119.99724 * 0.02617 * 18 17 16 31 31 H 1.08002 * 120.03443 * 180.02562 * 19 17 16 32 32 H 1.09002 * 117.49538 * 215.00282 * 22 9 7 33 33 H 1.08996 * 117.49933 * 0.02562 * 22 9 7 34 34 H 1.09001 * 117.49512 * 359.96713 * 23 9 7 35 35 H 1.08996 * 117.50150 * 144.96994 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0739 -1.2001 -0.1507 9 6 1.2660 -2.4905 0.2118 10 6 0.0843 -2.4263 1.1816 11 8 0.5223 -1.8514 2.4409 12 6 -0.3787 -1.8135 3.4424 13 8 -1.5208 -2.1795 3.2465 14 6 0.0193 -1.3226 4.7730 15 6 1.3174 -0.8464 4.9853 16 6 1.6844 -0.3870 6.2177 17 6 0.7732 -0.3999 7.2710 18 7 1.1558 0.0639 8.5245 19 6 -0.5191 -0.8765 7.0722 20 6 -0.8988 -1.3365 5.8298 21 17 -2.5095 -1.9327 5.5765 22 6 1.1491 -3.4397 -0.9824 23 6 2.0842 -3.7830 0.1799 24 1 -0.4851 0.8367 -0.0737 25 1 -0.2986 -3.4319 1.3549 26 1 -0.7036 -1.8063 0.7537 27 1 2.0287 -0.8381 4.1727 28 1 2.6860 -0.0161 6.3773 29 1 0.5223 0.0551 9.2590 30 1 2.0562 0.3963 8.6645 31 1 -1.2240 -0.8852 7.8904 32 1 0.2303 -4.0184 -1.0772 33 1 1.6068 -3.1267 -1.9208 34 1 3.1566 -3.6955 0.0056 35 1 1.7808 -4.5874 0.8500 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088256783.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:31 Heat of formation + Delta-G solvation = -31.433967 kcal Electronic energy + Delta-G solvation = -21276.146675 eV Core-core repulsion = 17880.214559 eV Total energy + Delta-G solvation = -3395.932116 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.89177 -38.68832 -36.68092 -36.27214 -34.80191 -34.49414 -32.11197 -30.84444 -29.29582 -26.42728 -25.29114 -23.16999 -22.77538 -21.20703 -20.30014 -19.11141 -17.65583 -17.28226 -16.77898 -16.42433 -15.44990 -15.27899 -14.57479 -14.54774 -14.34059 -13.88824 -13.69985 -13.56601 -13.03532 -12.67949 -12.07642 -11.79254 -11.71417 -11.47804 -11.28983 -10.93774 -10.87172 -10.79133 -10.47184 -10.40533 -10.28595 -9.65218 -9.35055 -9.13607 -9.02435 -8.82444 -8.71286 -8.08421 -7.74944 -5.98527 -4.04549 1.01460 1.32275 2.29387 3.16826 3.30739 3.36995 3.38473 3.55546 3.70969 4.02303 4.39741 4.80137 4.99305 5.01558 5.32619 5.37525 5.47522 5.60791 5.84809 5.99647 6.07988 6.23255 6.31830 6.40958 6.54983 6.59713 6.68842 6.72021 6.88204 7.04264 7.15904 7.29776 7.42835 7.49752 7.67669 7.94879 8.38877 8.79243 8.92637 9.55603 11.02326 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.005442 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.757030 B = 5143.780490 C = 5950.515180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.076 3.924 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.484 4.484 8 H 0.061 0.939 9 C 0.049 3.951 10 C 0.119 3.881 11 O -0.321 6.321 12 C 0.496 3.504 13 O -0.510 6.510 14 C -0.168 4.168 15 C 0.002 3.998 16 C -0.210 4.210 17 C 0.251 3.749 18 N -0.867 5.867 19 C -0.213 4.213 20 C 0.066 3.934 21 Cl -0.035 7.035 22 C -0.194 4.194 23 C -0.210 4.210 24 H 0.263 0.737 25 H 0.025 0.975 26 H 0.113 0.887 27 H 0.152 0.848 28 H 0.131 0.869 29 H 0.400 0.600 30 H 0.402 0.598 31 H 0.135 0.865 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.358 -0.195 16.177 16.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.127 4.127 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.521 4.521 8 H 0.079 0.921 9 C 0.049 3.951 10 C 0.046 3.954 11 O -0.236 6.236 12 C 0.341 3.659 13 O -0.401 6.401 14 C -0.172 4.172 15 C -0.018 4.018 16 C -0.232 4.232 17 C 0.144 3.856 18 N -0.405 5.405 19 C -0.237 4.237 20 C 0.038 3.962 21 Cl -0.006 7.006 22 C -0.232 4.232 23 C -0.247 4.247 24 H 0.074 0.926 25 H 0.043 0.957 26 H 0.130 0.870 27 H 0.170 0.830 28 H 0.149 0.851 29 H 0.228 0.772 30 H 0.231 0.769 31 H 0.153 0.847 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.712 -0.224 16.073 16.091 hybrid contribution 0.322 0.885 0.206 0.964 sum 1.034 0.661 16.279 16.325 Atomic orbital electron populations 1.69773 1.06018 1.27028 1.48905 1.24920 0.94741 0.99038 0.93997 0.86626 0.79622 0.82899 0.78690 1.20338 1.21289 1.19943 1.20360 0.93502 0.88702 1.49512 0.92100 1.18892 0.93797 0.89596 0.92821 1.22762 0.99066 0.94597 0.78935 1.86514 1.41766 1.73460 1.21827 1.20695 0.83979 0.76088 0.85151 1.90833 1.20060 1.45707 1.83527 1.18908 0.95135 1.11143 0.91971 1.21100 0.94228 0.89495 0.96932 1.20414 1.00206 1.09926 0.92702 1.17767 0.92132 0.89697 0.85977 1.42384 1.17266 1.71715 1.09090 1.20240 0.96152 1.10532 0.96758 1.20689 0.87007 0.95399 0.93119 1.98406 1.19715 1.85613 1.96820 1.22963 0.99668 1.06299 0.94265 1.22962 0.97121 1.01862 1.02792 0.92640 0.95686 0.86979 0.83043 0.85083 0.77163 0.76928 0.84745 0.91506 0.89855 0.90390 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.72 10.72 55.43 0.59 -24.12 16 2 C 0.08 2.06 5.19 -17.82 -0.09 1.97 16 3 Si 0.89 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.48 -13.05 8.76 -34.44 -0.30 -13.35 16 8 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 9 C 0.05 1.24 2.14 -155.66 -0.33 0.91 16 10 C 0.12 3.01 4.53 37.16 0.17 3.18 16 11 O -0.32 -7.80 9.07 -40.68 -0.37 -8.17 16 12 C 0.50 11.13 7.87 34.42 0.27 11.40 16 13 O -0.51 -12.21 13.74 -19.28 -0.26 -12.48 16 14 C -0.17 -3.08 5.88 -104.93 -0.62 -3.70 16 15 C 0.00 0.03 9.55 -39.58 -0.38 -0.35 16 16 C -0.21 -2.59 9.82 -39.81 -0.39 -2.98 16 17 C 0.25 2.79 6.75 -83.87 -0.57 2.22 16 18 N -0.87 -5.97 9.05 32.40 0.29 -5.68 16 19 C -0.21 -2.68 9.66 -39.39 -0.38 -3.06 16 20 C 0.07 1.07 6.35 -39.08 -0.25 0.82 16 21 Cl -0.04 -0.59 26.02 -51.86 -1.35 -1.94 16 22 C -0.19 -4.39 9.96 -26.69 -0.27 -4.65 16 23 C -0.21 -4.59 9.92 -26.69 -0.26 -4.85 16 24 H 0.26 7.17 8.32 -40.82 -0.34 6.83 16 25 H 0.02 0.60 8.03 -51.93 -0.42 0.18 16 26 H 0.11 3.13 6.06 -51.93 -0.31 2.81 16 27 H 0.15 2.49 7.60 -52.49 -0.40 2.09 16 28 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.40 1.98 8.83 -40.82 -0.36 1.62 16 30 H 0.40 2.00 8.83 -40.82 -0.36 1.64 16 31 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 320.02 15.07 4.82 4.82 Total: -1.00 -30.92 320.02 -8.63 -39.55 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -3.93 Total: 4.54 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -3.40 Total: -12.44 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.89 Total: -29.80 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.63 Total: -20.65 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.35 Total: -1.94 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.92 -8.63 -39.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256783.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.119 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds