Wall clock time and date at job start Tue Mar 31 2020 07:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99846 * 2 1 4 4 H 1.48491 * 109.47095 * 239.99909 * 3 2 1 5 5 H 1.48504 * 109.46800 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47366 * 119.99554 * 3 2 1 7 7 C 1.37872 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00133 * 170.69531 * 7 2 1 9 9 C 1.50704 * 119.99995 * 350.70989 * 7 2 1 10 10 C 1.53005 * 115.54735 * 324.73308 * 9 7 2 11 11 O 1.45194 * 109.47196 * 306.89109 * 10 9 7 12 12 C 1.34770 * 116.99865 * 184.70591 * 11 10 9 13 13 O 1.21523 * 120.00374 * 355.88661 * 12 11 10 14 14 C 1.47300 * 119.99986 * 176.15518 * 12 11 10 15 15 C 1.39892 * 120.08639 * 2.51366 * 14 12 11 16 16 C 1.36542 * 120.06151 * 179.76431 * 15 14 12 17 17 C 1.39278 * 120.24181 * 0.50960 * 16 15 14 18 18 N 1.39017 * 119.91852 * 179.71932 * 17 16 15 19 19 C 1.39168 * 120.17065 * 359.74674 * 17 16 15 20 20 C 1.37816 * 119.93281 * 359.97438 * 19 17 16 21 21 Cl 1.73600 * 120.11759 * 179.97438 * 20 19 17 22 22 C 1.52998 * 117.50214 * 110.40978 * 9 7 2 23 23 C 1.53002 * 117.50090 * 179.07107 * 9 7 2 24 24 H 0.96994 * 120.00586 * 5.03370 * 1 2 3 25 25 H 1.08993 * 109.47274 * 186.88432 * 10 9 7 26 26 H 1.09004 * 109.46715 * 66.89054 * 10 9 7 27 27 H 1.07998 * 119.96726 * 0.02562 * 15 14 12 28 28 H 1.08001 * 119.88140 * 180.25814 * 16 15 14 29 29 H 0.96997 * 120.00179 * 180.02562 * 18 17 16 30 30 H 0.96997 * 119.99724 * 0.02617 * 18 17 16 31 31 H 1.08002 * 120.03443 * 180.02562 * 19 17 16 32 32 H 1.09002 * 117.49538 * 215.00282 * 22 9 7 33 33 H 1.08996 * 117.49933 * 0.02562 * 22 9 7 34 34 H 1.09001 * 117.49512 * 359.96713 * 23 9 7 35 35 H 1.08996 * 117.50150 * 144.96994 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0739 -1.2001 -0.1507 9 6 1.2660 -2.4905 0.2118 10 6 0.0843 -2.4263 1.1816 11 8 0.5223 -1.8514 2.4409 12 6 -0.3787 -1.8135 3.4424 13 8 -1.5208 -2.1795 3.2465 14 6 0.0193 -1.3226 4.7730 15 6 1.3174 -0.8464 4.9853 16 6 1.6844 -0.3870 6.2177 17 6 0.7732 -0.3999 7.2710 18 7 1.1558 0.0639 8.5245 19 6 -0.5191 -0.8765 7.0722 20 6 -0.8988 -1.3365 5.8298 21 17 -2.5095 -1.9327 5.5765 22 6 1.1491 -3.4397 -0.9824 23 6 2.0842 -3.7830 0.1799 24 1 -0.4851 0.8367 -0.0737 25 1 -0.2986 -3.4319 1.3549 26 1 -0.7036 -1.8063 0.7537 27 1 2.0287 -0.8381 4.1727 28 1 2.6860 -0.0161 6.3773 29 1 0.5223 0.0551 9.2590 30 1 2.0562 0.3963 8.6645 31 1 -1.2240 -0.8852 7.8904 32 1 0.2303 -4.0184 -1.0772 33 1 1.6068 -3.1267 -1.9208 34 1 3.1566 -3.6955 0.0056 35 1 1.7808 -4.5874 0.8500 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088256783.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:31 Heat of formation + Delta-G solvation = -49.515353 kcal Electronic energy + Delta-G solvation = -21276.930743 eV Core-core repulsion = 17880.214559 eV Total energy + Delta-G solvation = -3396.716183 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31415 -40.07725 -38.45493 -37.54364 -36.58902 -35.48707 -34.14802 -31.93281 -30.44337 -28.24312 -27.30452 -24.44410 -23.87680 -22.98619 -21.75406 -21.06524 -18.95045 -18.56077 -18.18039 -17.74243 -17.12846 -17.10789 -16.45310 -15.77261 -15.51190 -15.38014 -15.03749 -14.78788 -14.60935 -14.05970 -13.77170 -13.53100 -13.24320 -12.97875 -12.79886 -12.74268 -12.48660 -12.30556 -12.17063 -12.10937 -11.49918 -11.49303 -11.26416 -11.00471 -10.80144 -10.61970 -10.03967 -9.93972 -8.68172 -8.01655 -6.14176 -0.20732 0.24783 1.09605 1.44079 1.46677 1.53824 1.73960 2.04427 2.45119 2.74639 2.85921 3.07353 3.60931 3.73127 3.97785 4.04910 4.25088 4.29847 4.32853 4.41137 4.61441 4.79236 4.81882 4.92102 4.94507 5.03108 5.16689 5.24845 5.31279 5.44764 5.53794 5.55353 5.86037 5.89822 6.36802 6.37253 6.82407 6.89559 7.09404 7.48327 8.97176 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.005442 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.757030 B = 5143.780490 C = 5950.515180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.031 3.969 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.497 4.497 8 H 0.059 0.941 9 C 0.010 3.990 10 C 0.130 3.870 11 O -0.333 6.333 12 C 0.487 3.513 13 O -0.540 6.540 14 C -0.211 4.211 15 C -0.006 4.006 16 C -0.203 4.203 17 C 0.276 3.724 18 N -0.838 5.838 19 C -0.209 4.209 20 C 0.057 3.943 21 Cl -0.052 7.052 22 C -0.188 4.188 23 C -0.186 4.186 24 H 0.258 0.742 25 H 0.027 0.973 26 H 0.079 0.921 27 H 0.136 0.864 28 H 0.165 0.835 29 H 0.415 0.585 30 H 0.417 0.583 31 H 0.164 0.836 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.213 0.641 18.977 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.169 4.169 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.534 4.534 8 H 0.077 0.923 9 C 0.010 3.990 10 C 0.056 3.944 11 O -0.249 6.249 12 C 0.335 3.665 13 O -0.433 6.433 14 C -0.215 4.215 15 C -0.026 4.026 16 C -0.226 4.226 17 C 0.164 3.836 18 N -0.376 5.376 19 C -0.232 4.232 20 C 0.029 3.971 21 Cl -0.022 7.022 22 C -0.226 4.226 23 C -0.223 4.223 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.097 0.903 27 H 0.154 0.846 28 H 0.182 0.818 29 H 0.246 0.754 30 H 0.249 0.751 31 H 0.181 0.819 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.606 0.621 18.931 19.120 hybrid contribution -0.198 0.643 -0.465 0.818 sum 2.407 1.265 18.466 18.665 Atomic orbital electron populations 1.69954 1.07333 1.27192 1.50117 1.25620 0.95378 1.02070 0.93828 0.85727 0.78483 0.79009 0.79198 1.19494 1.21591 1.18889 1.20607 0.93490 0.89900 1.49375 0.92317 1.19032 0.95018 0.90470 0.94514 1.22444 0.98427 0.93850 0.79655 1.86514 1.42550 1.73890 1.21900 1.21531 0.83486 0.75427 0.86100 1.90790 1.20966 1.47378 1.84123 1.18805 0.97190 1.15143 0.90367 1.21015 0.92966 0.90371 0.98231 1.20663 1.01837 1.08700 0.91388 1.17774 0.91105 0.87599 0.87116 1.42411 1.18451 1.69019 1.07700 1.20511 0.97361 1.09413 0.95932 1.20855 0.86041 0.96206 0.93974 1.98393 1.20847 1.85980 1.97012 1.22967 1.00481 1.05239 0.93906 1.22971 0.97339 1.00041 1.01913 0.93229 0.95494 0.90344 0.84597 0.81792 0.75374 0.75117 0.81856 0.90384 0.89844 0.89391 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.90 10.72 21.45 0.23 -52.67 16 2 C 0.03 1.71 5.19 84.65 0.44 2.15 16 3 Si 0.95 43.31 29.55 68.60 2.03 45.34 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.50 -27.18 8.76 25.60 0.22 -26.96 16 8 H 0.06 3.14 7.83 -2.91 -0.02 3.12 16 9 C 0.01 0.51 2.14 -52.92 -0.11 0.40 16 10 C 0.13 6.84 4.53 71.98 0.33 7.16 16 11 O -0.33 -16.98 9.07 -56.82 -0.52 -17.50 16 12 C 0.49 22.99 7.87 70.21 0.55 23.54 16 13 O -0.54 -27.34 13.74 19.76 0.27 -27.07 16 14 C -0.21 -7.92 5.88 -20.07 -0.12 -8.03 16 15 C -0.01 -0.20 9.55 22.27 0.21 0.02 16 16 C -0.20 -4.38 9.82 22.12 0.22 -4.17 16 17 C 0.28 4.99 6.75 38.48 0.26 5.25 16 18 N -0.84 -6.96 9.05 -51.39 -0.47 -7.43 16 19 C -0.21 -4.65 9.66 22.39 0.22 -4.43 16 20 C 0.06 1.84 6.35 22.60 0.14 1.98 16 21 Cl -0.05 -1.77 26.02 -2.72 -0.07 -1.84 16 22 C -0.19 -8.48 9.96 30.62 0.30 -8.17 16 23 C -0.19 -7.95 9.92 30.62 0.30 -7.65 16 24 H 0.26 14.63 8.32 -92.71 -0.77 13.86 16 25 H 0.03 1.35 8.03 -2.39 -0.02 1.33 16 26 H 0.08 4.65 6.06 -2.38 -0.01 4.63 16 27 H 0.14 4.58 7.60 -2.91 -0.02 4.56 16 28 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.42 1.73 8.83 -92.71 -0.82 0.91 16 30 H 0.42 1.70 8.83 -92.71 -0.82 0.88 16 31 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 32 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 33 H 0.08 3.71 8.14 -2.39 -0.02 3.69 16 34 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 35 H 0.08 3.33 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -70.35 320.02 3.95 -66.39 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -0.49 Total: 13.68 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 2.97 Total: -18.91 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.24 Total: -60.10 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.24 Total: -44.57 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.07 Total: -1.84 kcal Total: -70.35 3.95 -66.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256783.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.876 kcal (2) G-P(sol) polarization free energy of solvation -70.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds