Wall clock time and date at job start Tue Mar 31 2020 07:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00032 * 2 1 4 4 H 1.48497 * 109.47131 * 273.47537 * 3 2 1 5 5 H 1.48497 * 109.47241 * 33.48015 * 3 2 1 6 6 H 1.48503 * 109.47180 * 153.47905 * 3 2 1 7 7 C 1.37874 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00568 * 354.00377 * 7 2 1 9 9 C 1.50699 * 119.99845 * 174.27826 * 7 2 1 10 10 C 1.53002 * 115.55509 * 294.48763 * 9 7 2 11 11 O 1.45204 * 109.46905 * 294.96993 * 10 9 7 12 12 C 1.34724 * 116.99581 * 183.83294 * 11 10 9 13 13 O 1.21473 * 119.99897 * 4.84167 * 12 11 10 14 14 C 1.47671 * 119.99695 * 184.84233 * 12 11 10 15 15 C 1.39694 * 120.10582 * 5.20978 * 14 12 11 16 16 C 1.37928 * 120.00550 * 179.97438 * 15 14 12 17 17 C 1.38377 * 120.22530 * 359.97438 * 16 15 14 18 18 Cl 1.73595 * 119.89772 * 180.02562 * 17 16 15 19 19 C 1.39130 * 120.20523 * 0.02562 * 17 16 15 20 20 N 1.39782 * 120.00416 * 180.02562 * 19 17 16 21 21 C 1.38572 * 119.99041 * 359.72116 * 19 17 16 22 22 C 1.53006 * 117.49960 * 148.81599 * 9 7 2 23 23 C 1.53004 * 117.49795 * 80.16138 * 9 7 2 24 24 H 0.97002 * 120.00020 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46365 * 54.96285 * 10 9 7 26 26 H 1.08989 * 109.47465 * 174.96402 * 10 9 7 27 27 H 1.08001 * 119.99429 * 359.97359 * 15 14 12 28 28 H 1.08007 * 119.88820 * 180.02562 * 16 15 14 29 29 H 0.97004 * 120.00244 * 359.97438 * 20 19 17 30 30 H 0.96997 * 120.00093 * 180.02562 * 20 19 17 31 31 H 1.07997 * 120.10869 * 180.27403 * 21 19 17 32 32 H 1.09000 * 117.49904 * 0.02562 * 22 9 7 33 33 H 1.09006 * 117.49822 * 145.02069 * 22 9 7 34 34 H 1.09007 * 117.49682 * 214.98336 * 23 9 7 35 35 H 1.08995 * 117.50221 * 359.97029 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4231 2.0888 -1.3975 5 1 1.4854 2.6303 0.7723 6 1 3.5816 1.4200 0.6252 7 6 2.0045 -1.1941 -0.0005 8 1 1.4690 -2.1268 0.0967 9 6 3.5058 -1.1973 -0.1307 10 6 4.0537 -0.6893 -1.4659 11 8 3.6457 -1.5890 -2.5301 12 6 4.1145 -1.3270 -3.7657 13 8 4.9130 -0.4272 -3.9341 14 6 3.6576 -2.1336 -4.9151 15 6 2.6596 -3.0959 -4.7433 16 6 2.2340 -3.8478 -5.8184 17 6 2.7920 -3.6525 -7.0695 18 17 2.2495 -4.6031 -8.4169 19 6 3.7865 -2.6966 -7.2509 20 7 4.3469 -2.5024 -8.5167 21 6 4.2170 -1.9327 -6.1779 22 6 4.2728 -2.3238 0.5650 23 6 4.3246 -0.9011 1.1275 24 1 -0.4850 0.8401 0.0004 25 1 3.6617 0.3084 -1.6633 26 1 5.1419 -0.6498 -1.4207 27 1 2.2213 -3.2510 -3.7685 28 1 1.4620 -4.5910 -5.6835 29 1 4.0427 -3.0344 -9.2687 30 1 5.0405 -1.8363 -8.6430 31 1 4.9857 -1.1871 -6.3175 32 1 3.6914 -3.0627 1.1163 33 1 5.1679 -2.7027 0.0715 34 1 5.2537 -0.3446 1.0039 35 1 3.7774 -0.7035 2.0492 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088256791.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:40 Heat of formation + Delta-G solvation = -39.841910 kcal Electronic energy + Delta-G solvation = -20829.036608 eV Core-core repulsion = 17432.739896 eV Total energy + Delta-G solvation = -3396.296711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.28689 -39.08516 -37.12089 -36.55938 -35.42902 -34.76735 -32.15191 -31.13093 -28.98776 -27.37050 -25.40925 -23.98338 -22.53461 -21.65366 -20.60884 -19.19549 -17.94863 -17.39320 -16.81777 -16.58203 -16.02080 -15.88768 -15.31863 -14.75168 -14.30628 -13.97455 -13.94719 -13.87842 -13.13362 -12.68899 -12.53025 -12.31281 -12.25112 -11.79354 -11.71475 -11.09222 -11.03939 -10.94260 -10.84390 -10.64399 -10.41687 -10.13849 -10.00474 -9.54868 -9.09369 -8.99528 -8.69751 -8.51413 -7.79969 -6.13839 -4.14460 0.58860 1.34785 1.93770 2.70412 3.00602 3.24986 3.35874 3.39687 3.60036 3.73908 4.37999 4.59821 4.73418 5.01445 5.10046 5.19512 5.22492 5.37279 5.61741 5.65485 5.75794 5.85657 5.95904 6.10348 6.15770 6.28381 6.37877 6.44976 6.52183 6.63894 6.81984 7.04417 7.08909 7.09242 7.43606 7.67765 8.17729 8.47326 8.89897 9.48642 10.97909 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.003855 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.794339 B = 7261.127941 C = 7486.321025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.080 3.920 3 Si 0.858 3.142 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.249 1.249 7 C -0.478 4.478 8 H 0.081 0.919 9 C -0.009 4.009 10 C 0.107 3.893 11 O -0.318 6.318 12 C 0.500 3.500 13 O -0.518 6.518 14 C -0.063 4.063 15 C -0.100 4.100 16 C -0.075 4.075 17 C -0.089 4.089 18 Cl -0.072 7.072 19 C 0.213 3.787 20 N -0.873 5.873 21 C -0.127 4.127 22 C -0.175 4.175 23 C -0.181 4.181 24 H 0.265 0.735 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.155 0.845 28 H 0.142 0.858 29 H 0.401 0.599 30 H 0.402 0.598 31 H 0.143 0.857 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.739 -6.786 -14.982 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.123 4.123 3 Si 0.685 3.315 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.172 1.172 7 C -0.515 4.515 8 H 0.099 0.901 9 C -0.010 4.010 10 C 0.033 3.967 11 O -0.233 6.233 12 C 0.344 3.656 13 O -0.409 6.409 14 C -0.065 4.065 15 C -0.121 4.121 16 C -0.094 4.094 17 C -0.120 4.120 18 Cl -0.044 7.044 19 C 0.107 3.893 20 N -0.414 5.414 21 C -0.150 4.150 22 C -0.212 4.212 23 C -0.219 4.219 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.172 0.828 28 H 0.160 0.840 29 H 0.231 0.769 30 H 0.231 0.769 31 H 0.161 0.839 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.736 -6.495 -15.054 18.129 hybrid contribution 0.529 1.151 -0.512 1.366 sum 8.265 -5.344 -15.566 18.417 Atomic orbital electron populations 1.69885 1.06235 1.27096 1.49748 1.24909 0.94551 0.98806 0.93995 0.87159 0.81736 0.84108 0.78494 1.20504 1.21401 1.17220 1.20216 0.86345 0.94708 1.50243 0.90128 1.19331 0.95241 0.99793 0.86587 1.23014 0.97030 0.91583 0.85051 1.86634 1.67245 1.53507 1.15917 1.21140 0.78468 0.81857 0.84104 1.90776 1.32854 1.31225 1.86068 1.19040 0.98624 0.97604 0.91256 1.21422 0.96160 0.94295 1.00195 1.20865 0.99210 0.99498 0.89803 1.20615 1.01809 0.99454 0.90135 1.98338 1.89176 1.71245 1.45606 1.17178 0.92141 0.93202 0.86761 1.42476 1.45757 1.45991 1.07145 1.20568 1.03013 1.01486 0.89965 1.22793 1.01486 0.91795 1.05114 1.23084 1.00940 0.98427 0.99447 0.92493 0.92025 0.92965 0.82777 0.84020 0.76902 0.76869 0.83914 0.89278 0.90797 0.91076 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 2 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 3 Si 0.86 21.05 24.98 -169.99 -4.25 16.80 16 4 H -0.28 -6.91 7.03 56.52 0.40 -6.51 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.25 -5.66 5.72 56.52 0.32 -5.34 16 7 C -0.48 -13.00 9.33 -34.44 -0.32 -13.33 16 8 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 9 C -0.01 -0.20 1.06 -155.65 -0.17 -0.36 16 10 C 0.11 2.36 5.01 37.16 0.19 2.55 16 11 O -0.32 -6.77 9.41 -40.56 -0.38 -7.16 16 12 C 0.50 9.62 7.88 34.58 0.27 9.90 16 13 O -0.52 -10.75 16.07 -19.24 -0.31 -11.06 16 14 C -0.06 -0.99 5.87 -105.00 -0.62 -1.61 16 15 C -0.10 -1.44 9.61 -39.15 -0.38 -1.81 16 16 C -0.07 -0.90 9.80 -39.64 -0.39 -1.29 16 17 C -0.09 -1.02 6.34 -39.20 -0.25 -1.27 16 18 Cl -0.07 -0.71 27.57 -51.86 -1.43 -2.14 16 19 C 0.21 2.43 6.75 -83.78 -0.57 1.87 16 20 N -0.87 -7.20 9.04 32.41 0.29 -6.91 16 21 C -0.13 -1.69 9.44 -38.96 -0.37 -2.06 16 22 C -0.17 -3.45 9.96 -26.69 -0.27 -3.72 16 23 C -0.18 -3.70 8.01 -26.69 -0.21 -3.91 16 24 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.06 1.46 5.08 -51.93 -0.26 1.19 16 26 H 0.05 1.06 7.96 -51.94 -0.41 0.64 16 27 H 0.15 2.30 7.61 -52.49 -0.40 1.90 16 28 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 29 H 0.40 2.87 7.49 -40.82 -0.31 2.56 16 30 H 0.40 2.56 8.84 -40.82 -0.36 2.20 16 31 H 0.14 1.79 7.66 -52.49 -0.40 1.39 16 32 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.09 1.93 8.14 -51.93 -0.42 1.50 16 LS Contribution 317.04 15.07 4.78 4.78 Total: -1.00 -30.80 317.04 -7.59 -38.39 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -3.90 Total: 6.04 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -3.17 Total: -12.89 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 1.07 Total: -32.76 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.69 Total: -18.22 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.25 Total: 16.80 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.43 Total: -2.14 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.80 -7.59 -38.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256791.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.454 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds