Wall clock time and date at job start Tue Mar 31 2020 07:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00032 * 2 1 4 4 H 1.48497 * 109.47131 * 273.47537 * 3 2 1 5 5 H 1.48497 * 109.47241 * 33.48015 * 3 2 1 6 6 H 1.48503 * 109.47180 * 153.47905 * 3 2 1 7 7 C 1.37874 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00568 * 354.00377 * 7 2 1 9 9 C 1.50699 * 119.99845 * 174.27826 * 7 2 1 10 10 C 1.53002 * 115.55509 * 294.48763 * 9 7 2 11 11 O 1.45204 * 109.46905 * 294.96993 * 10 9 7 12 12 C 1.34724 * 116.99581 * 183.83294 * 11 10 9 13 13 O 1.21473 * 119.99897 * 4.84167 * 12 11 10 14 14 C 1.47671 * 119.99695 * 184.84233 * 12 11 10 15 15 C 1.39694 * 120.10582 * 5.20978 * 14 12 11 16 16 C 1.37928 * 120.00550 * 179.97438 * 15 14 12 17 17 C 1.38377 * 120.22530 * 359.97438 * 16 15 14 18 18 Cl 1.73595 * 119.89772 * 180.02562 * 17 16 15 19 19 C 1.39130 * 120.20523 * 0.02562 * 17 16 15 20 20 N 1.39782 * 120.00416 * 180.02562 * 19 17 16 21 21 C 1.38572 * 119.99041 * 359.72116 * 19 17 16 22 22 C 1.53006 * 117.49960 * 148.81599 * 9 7 2 23 23 C 1.53004 * 117.49795 * 80.16138 * 9 7 2 24 24 H 0.97002 * 120.00020 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46365 * 54.96285 * 10 9 7 26 26 H 1.08989 * 109.47465 * 174.96402 * 10 9 7 27 27 H 1.08001 * 119.99429 * 359.97359 * 15 14 12 28 28 H 1.08007 * 119.88820 * 180.02562 * 16 15 14 29 29 H 0.97004 * 120.00244 * 359.97438 * 20 19 17 30 30 H 0.96997 * 120.00093 * 180.02562 * 20 19 17 31 31 H 1.07997 * 120.10869 * 180.27403 * 21 19 17 32 32 H 1.09000 * 117.49904 * 0.02562 * 22 9 7 33 33 H 1.09006 * 117.49822 * 145.02069 * 22 9 7 34 34 H 1.09007 * 117.49682 * 214.98336 * 23 9 7 35 35 H 1.08995 * 117.50221 * 359.97029 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4231 2.0888 -1.3975 5 1 1.4854 2.6303 0.7723 6 1 3.5816 1.4200 0.6252 7 6 2.0045 -1.1941 -0.0005 8 1 1.4690 -2.1268 0.0967 9 6 3.5058 -1.1973 -0.1307 10 6 4.0537 -0.6893 -1.4659 11 8 3.6457 -1.5890 -2.5301 12 6 4.1145 -1.3270 -3.7657 13 8 4.9130 -0.4272 -3.9341 14 6 3.6576 -2.1336 -4.9151 15 6 2.6596 -3.0959 -4.7433 16 6 2.2340 -3.8478 -5.8184 17 6 2.7920 -3.6525 -7.0695 18 17 2.2495 -4.6031 -8.4169 19 6 3.7865 -2.6966 -7.2509 20 7 4.3469 -2.5024 -8.5167 21 6 4.2170 -1.9327 -6.1779 22 6 4.2728 -2.3238 0.5650 23 6 4.3246 -0.9011 1.1275 24 1 -0.4850 0.8401 0.0004 25 1 3.6617 0.3084 -1.6633 26 1 5.1419 -0.6498 -1.4207 27 1 2.2213 -3.2510 -3.7685 28 1 1.4620 -4.5910 -5.6835 29 1 4.0427 -3.0344 -9.2687 30 1 5.0405 -1.8363 -8.6430 31 1 4.9857 -1.1871 -6.3175 32 1 3.6914 -3.0627 1.1163 33 1 5.1679 -2.7027 0.0715 34 1 5.2537 -0.3446 1.0039 35 1 3.7774 -0.7035 2.0492 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088256791.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:40 Heat of formation + Delta-G solvation = -58.657850 kcal Electronic energy + Delta-G solvation = -20829.852528 eV Core-core repulsion = 17432.739896 eV Total energy + Delta-G solvation = -3397.112632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.66718 -40.25584 -38.75725 -37.48358 -37.03642 -35.67180 -34.27414 -32.21211 -30.00529 -28.98970 -27.36835 -25.27224 -23.53320 -23.25307 -21.92478 -21.05585 -19.17418 -18.85316 -18.14857 -17.74926 -17.58082 -17.27471 -16.66731 -16.48985 -15.50594 -15.27199 -15.07375 -14.87810 -14.85338 -14.57500 -14.07295 -13.93300 -13.41379 -13.00848 -12.90519 -12.75778 -12.66121 -12.27895 -12.11620 -11.93343 -11.83515 -11.78542 -11.68702 -11.40887 -10.98113 -10.62743 -10.39063 -10.01709 -8.67820 -8.29871 -6.33556 -0.54258 0.34787 1.02181 1.29294 1.34814 1.37595 1.45651 1.61241 2.33638 2.61955 2.76557 2.97869 3.25833 3.61973 3.65100 3.95110 4.10048 4.14056 4.14428 4.24244 4.37184 4.41468 4.58876 4.70860 4.80375 4.89330 4.98361 5.10983 5.20511 5.26243 5.46667 5.50066 5.51077 5.66982 6.28787 6.30909 6.65103 6.72629 6.81088 7.32602 8.85592 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.003855 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.794339 B = 7261.127941 C = 7486.321025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.027 3.973 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.216 1.216 7 C -0.474 4.474 8 H 0.038 0.962 9 C -0.043 4.043 10 C 0.109 3.891 11 O -0.334 6.334 12 C 0.497 3.503 13 O -0.538 6.538 14 C -0.085 4.085 15 C -0.113 4.113 16 C -0.068 4.068 17 C -0.089 4.089 18 Cl -0.051 7.051 19 C 0.222 3.778 20 N -0.857 5.857 21 C -0.129 4.129 22 C -0.156 4.156 23 C -0.168 4.168 24 H 0.265 0.735 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.138 0.862 28 H 0.162 0.838 29 H 0.410 0.590 30 H 0.414 0.586 31 H 0.149 0.851 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.845 -7.078 -16.469 20.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.171 4.171 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.138 1.138 7 C -0.512 4.512 8 H 0.057 0.943 9 C -0.044 4.044 10 C 0.035 3.965 11 O -0.249 6.249 12 C 0.344 3.656 13 O -0.431 6.431 14 C -0.087 4.087 15 C -0.134 4.134 16 C -0.087 4.087 17 C -0.121 4.121 18 Cl -0.022 7.022 19 C 0.114 3.886 20 N -0.398 5.398 21 C -0.152 4.152 22 C -0.193 4.193 23 C -0.205 4.205 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.156 0.844 28 H 0.180 0.820 29 H 0.241 0.759 30 H 0.245 0.755 31 H 0.166 0.834 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.882 -6.802 -16.567 20.454 hybrid contribution -0.163 1.074 -0.201 1.105 sum 9.718 -5.728 -16.768 20.210 Atomic orbital electron populations 1.70024 1.08050 1.27893 1.52265 1.25655 0.95128 1.02298 0.94003 0.86285 0.81981 0.79797 0.78212 1.21220 1.21466 1.13834 1.20356 0.89027 0.92937 1.48847 0.94348 1.19238 0.93009 1.03837 0.88315 1.22864 0.98107 0.90678 0.84803 1.86646 1.67880 1.53602 1.16814 1.21741 0.77880 0.81895 0.84084 1.90742 1.33896 1.32248 1.86183 1.18968 1.00274 0.98533 0.90883 1.21303 0.96570 0.95103 1.00423 1.21016 0.99202 0.99132 0.89353 1.20717 1.01421 0.99381 0.90623 1.98350 1.88923 1.70607 1.44307 1.17154 0.91693 0.92376 0.87358 1.42473 1.45334 1.45917 1.06109 1.20585 1.03147 1.01973 0.89499 1.22861 1.01459 0.91380 1.03594 1.23143 1.01035 0.98994 0.97320 0.92578 0.93974 0.90634 0.84374 0.82029 0.75902 0.75515 0.83360 0.89602 0.88021 0.88132 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.47 13.96 21.45 0.30 -58.17 16 2 C 0.03 1.56 5.47 84.65 0.46 2.03 16 3 Si 0.91 43.71 24.98 68.60 1.71 45.42 16 4 H -0.29 -13.90 7.03 99.48 0.70 -13.20 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.22 -9.11 5.72 99.48 0.57 -8.54 16 7 C -0.47 -26.54 9.33 25.60 0.24 -26.30 16 8 H 0.04 2.40 8.06 -2.91 -0.02 2.37 16 9 C -0.04 -1.94 1.06 -52.92 -0.06 -2.00 16 10 C 0.11 4.74 5.01 71.98 0.36 5.10 16 11 O -0.33 -14.41 9.41 -56.34 -0.53 -14.94 16 12 C 0.50 19.32 7.88 70.31 0.55 19.88 16 13 O -0.54 -22.25 16.07 19.92 0.32 -21.93 16 14 C -0.08 -2.67 5.87 -20.11 -0.12 -2.78 16 15 C -0.11 -3.28 9.61 22.55 0.22 -3.06 16 16 C -0.07 -1.56 9.80 22.23 0.22 -1.34 16 17 C -0.09 -1.88 6.34 22.52 0.14 -1.74 16 18 Cl -0.05 -0.86 27.57 -2.72 -0.07 -0.93 16 19 C 0.22 4.60 6.75 38.17 0.26 4.86 16 20 N -0.86 -11.70 9.04 -51.37 -0.46 -12.17 16 21 C -0.13 -3.29 9.44 22.67 0.21 -3.07 16 22 C -0.16 -5.84 9.96 30.62 0.30 -5.53 16 23 C -0.17 -6.36 8.01 30.62 0.25 -6.12 16 24 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 25 H 0.04 1.97 5.08 -2.39 -0.01 1.96 16 26 H 0.08 2.89 7.96 -2.39 -0.02 2.87 16 27 H 0.14 4.36 7.61 -2.91 -0.02 4.34 16 28 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 29 H 0.41 4.55 7.49 -92.70 -0.69 3.85 16 30 H 0.41 4.06 8.84 -92.71 -0.82 3.25 16 31 H 0.15 3.55 7.66 -2.91 -0.02 3.52 16 32 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 34 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 35 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -68.32 317.04 3.79 -64.53 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -0.51 Total: 18.28 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 3.04 Total: -20.08 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -0.17 Total: -70.34 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.21 Total: -36.87 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.71 Total: 45.42 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.07 Total: -0.93 kcal Total: -68.32 3.79 -64.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256791.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.868 kcal (2) G-P(sol) polarization free energy of solvation -68.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds