Wall clock time and date at job start Tue Mar 31 2020 06:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00172 * 2 1 4 4 H 1.48495 * 109.47263 * 270.00103 * 3 2 1 5 5 H 1.48504 * 109.47083 * 30.00433 * 3 2 1 6 6 H 1.48499 * 109.47176 * 150.00008 * 3 2 1 7 7 C 1.37880 * 119.99308 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99195 * 183.27851 * 7 2 1 9 9 C 1.50695 * 120.00491 * 3.27507 * 7 2 1 10 10 C 1.52993 * 115.54993 * 324.19937 * 9 7 2 11 11 O 1.45198 * 109.47274 * 306.37809 * 10 9 7 12 12 C 1.34777 * 116.99815 * 175.24435 * 11 10 9 13 13 O 1.21523 * 120.00441 * 5.17923 * 12 11 10 14 14 C 1.47237 * 119.99881 * 185.18438 * 12 11 10 15 15 C 1.39831 * 120.19723 * 6.54204 * 14 12 11 16 16 C 1.37662 * 119.93537 * 179.72571 * 15 14 12 17 17 C 1.38788 * 120.34454 * 0.22452 * 16 15 14 18 18 Cl 1.73592 * 119.79703 * 180.02562 * 17 16 15 19 19 C 1.38102 * 120.40651 * 0.05006 * 17 16 15 20 20 C 1.38895 * 120.05730 * 359.97438 * 19 17 16 21 21 N 1.38840 * 120.17191 * 179.97438 * 20 19 17 22 22 C 1.53003 * 117.49564 * 109.87059 * 9 7 2 23 23 C 1.52997 * 117.49998 * 178.52763 * 9 7 2 24 24 H 0.96998 * 119.99749 * 5.00016 * 1 2 3 25 25 H 1.09005 * 109.46975 * 186.37568 * 10 9 7 26 26 H 1.08998 * 109.47316 * 66.37751 * 10 9 7 27 27 H 1.08008 * 120.03764 * 359.97438 * 15 14 12 28 28 H 1.07999 * 119.83442 * 180.25541 * 16 15 14 29 29 H 1.07995 * 119.97160 * 179.97438 * 19 17 16 30 30 H 0.96999 * 119.99885 * 353.67919 * 21 20 19 31 31 H 0.96995 * 119.99928 * 173.68910 * 21 20 19 32 32 H 1.09004 * 117.49739 * 215.00076 * 22 9 7 33 33 H 1.08997 * 117.50154 * 0.02562 * 22 9 7 34 34 H 1.09009 * 117.49940 * 359.97438 * 23 9 7 35 35 H 1.09004 * 117.50096 * 144.97409 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0832 -1.1949 0.0530 9 6 1.2528 -2.4981 -0.0757 10 6 -0.0850 -2.5322 0.6658 11 8 0.1149 -2.1215 2.0441 12 6 -0.9858 -2.0018 2.8126 13 8 -2.0719 -2.3240 2.3730 14 6 -0.8724 -1.4804 4.1849 15 6 0.3486 -0.9810 4.6488 16 6 0.4471 -0.4896 5.9310 17 6 -0.6589 -0.4910 6.7693 18 17 -0.5188 0.1328 8.3833 19 6 -1.8702 -0.9859 6.3277 20 6 -1.9884 -1.4863 5.0374 21 7 -3.2049 -1.9850 4.5911 22 6 1.3628 -3.3032 -1.3721 23 6 2.0760 -3.7873 -0.1073 24 1 -0.4850 0.8369 -0.0732 25 1 -0.4873 -3.5451 0.6431 26 1 -0.7860 -1.8520 0.1821 27 1 1.2125 -0.9771 4.0006 28 1 1.3899 -0.1005 6.2862 29 1 -2.7262 -0.9840 6.9861 30 1 -3.9495 -2.0698 5.2068 31 1 -3.3100 -2.2487 3.6636 32 1 0.4819 -3.8572 -1.6968 33 1 1.9791 -2.8899 -2.1705 34 1 3.1615 -3.6923 -0.0741 35 1 1.6647 -4.6597 0.4006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088256792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:21 Heat of formation + Delta-G solvation = -51.283770 kcal Electronic energy + Delta-G solvation = -21334.372050 eV Core-core repulsion = 17937.579183 eV Total energy + Delta-G solvation = -3396.792868 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.55396 -39.95089 -38.49601 -37.58833 -36.84341 -35.30816 -34.16732 -32.23470 -29.97973 -28.31729 -27.37860 -24.95920 -23.49127 -22.99439 -21.91672 -21.07135 -18.88580 -18.54903 -18.21849 -17.75205 -17.37059 -17.16022 -16.46418 -15.97913 -15.57064 -15.25391 -15.05721 -14.82552 -14.64161 -13.92285 -13.81200 -13.51870 -13.25172 -12.99434 -12.91791 -12.68538 -12.62833 -12.32796 -12.12045 -11.94804 -11.71462 -11.53143 -11.25092 -11.18242 -10.87777 -10.67339 -10.14377 -9.93521 -8.72132 -7.99913 -6.17463 -0.36182 0.45876 0.99435 1.43067 1.46040 1.54737 1.56075 2.03248 2.43849 2.71704 2.88794 3.06416 3.57960 3.72147 3.91555 4.11686 4.23436 4.26009 4.36700 4.40993 4.60326 4.75023 4.81058 4.89167 4.92716 5.03853 5.18744 5.21702 5.26242 5.46176 5.52749 5.55504 5.80245 5.86250 6.34350 6.39219 6.79437 6.90399 7.02814 7.46488 8.94060 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.004901 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.744321 B = 5712.249983 C = 6572.553444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.032 3.968 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.492 4.492 8 H 0.056 0.944 9 C 0.006 3.994 10 C 0.130 3.870 11 O -0.326 6.326 12 C 0.510 3.490 13 O -0.557 6.557 14 C -0.234 4.234 15 C -0.003 4.003 16 C -0.188 4.188 17 C 0.048 3.952 18 Cl -0.050 7.050 19 C -0.203 4.203 20 C 0.288 3.712 21 N -0.846 5.846 22 C -0.186 4.186 23 C -0.188 4.188 24 H 0.257 0.743 25 H 0.027 0.973 26 H 0.088 0.912 27 H 0.137 0.863 28 H 0.155 0.845 29 H 0.166 0.834 30 H 0.411 0.589 31 H 0.412 0.588 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.439 -1.643 13.897 14.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.167 4.167 3 Si 0.776 3.224 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.530 4.530 8 H 0.075 0.925 9 C 0.005 3.995 10 C 0.057 3.943 11 O -0.240 6.240 12 C 0.359 3.641 13 O -0.452 6.452 14 C -0.240 4.240 15 C -0.022 4.022 16 C -0.209 4.209 17 C 0.020 3.980 18 Cl -0.021 7.021 19 C -0.227 4.227 20 C 0.174 3.826 21 N -0.393 5.393 22 C -0.224 4.224 23 C -0.226 4.226 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.106 0.894 27 H 0.155 0.845 28 H 0.173 0.827 29 H 0.184 0.816 30 H 0.242 0.758 31 H 0.253 0.747 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.856 -1.597 13.869 14.483 hybrid contribution -0.079 0.655 -0.579 0.878 sum -3.935 -0.941 13.290 13.892 Atomic orbital electron populations 1.69954 1.06918 1.26880 1.50583 1.25572 0.95489 1.01801 0.93885 0.85663 0.78897 0.79658 0.78154 1.20259 1.21368 1.19001 1.20684 0.92440 0.89707 1.50140 0.92548 1.19077 0.93223 0.91345 0.95806 1.22599 0.99020 0.95634 0.77067 1.86499 1.34422 1.78061 1.24990 1.21321 0.82213 0.73921 0.86615 1.90337 1.28939 1.50988 1.74956 1.18817 0.96558 1.16541 0.92121 1.21269 0.95752 0.90123 0.95043 1.20898 0.99604 1.07220 0.93159 1.20932 0.94579 0.95728 0.86731 1.98376 1.98186 1.85152 1.20389 1.20550 0.98903 1.08251 0.94970 1.17616 0.85487 0.88123 0.91334 1.43395 1.10301 1.68707 1.16865 1.22996 1.02102 1.05186 0.92149 1.22973 0.98683 0.98739 1.02161 0.93324 0.95501 0.89437 0.84524 0.82690 0.81618 0.75830 0.74703 0.90034 0.89753 0.89655 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.17 10.23 21.45 0.22 -49.95 16 2 C 0.03 1.72 5.34 84.65 0.45 2.17 16 3 Si 0.95 42.50 29.54 68.60 2.03 44.53 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.49 -26.17 8.77 25.60 0.22 -25.94 16 8 H 0.06 2.97 7.82 -2.91 -0.02 2.95 16 9 C 0.01 0.29 2.20 -52.93 -0.12 0.17 16 10 C 0.13 6.47 4.38 71.98 0.32 6.79 16 11 O -0.33 -15.80 9.00 -56.88 -0.51 -16.31 16 12 C 0.51 22.45 7.86 70.19 0.55 23.01 16 13 O -0.56 -25.18 13.43 19.76 0.27 -24.91 16 14 C -0.23 -8.46 5.89 -19.99 -0.12 -8.58 16 15 C 0.00 -0.09 9.61 22.52 0.22 0.12 16 16 C -0.19 -4.93 9.80 22.27 0.22 -4.71 16 17 C 0.05 1.14 6.32 22.37 0.14 1.28 16 18 Cl -0.05 -0.98 28.94 -2.72 -0.08 -1.06 16 19 C -0.20 -4.75 9.65 22.39 0.22 -4.54 16 20 C 0.29 8.47 6.76 38.73 0.26 8.73 16 21 N -0.85 -22.20 8.93 -50.94 -0.45 -22.65 16 22 C -0.19 -7.96 9.96 30.62 0.30 -7.66 16 23 C -0.19 -7.79 9.92 30.62 0.30 -7.49 16 24 H 0.26 13.91 8.32 -92.71 -0.77 13.14 16 25 H 0.03 1.26 8.08 -2.38 -0.02 1.24 16 26 H 0.09 4.86 5.93 -2.39 -0.01 4.85 16 27 H 0.14 4.82 7.63 -2.91 -0.02 4.79 16 28 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 29 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.41 7.35 8.84 -92.71 -0.82 6.53 16 31 H 0.41 13.02 5.35 -94.35 -0.50 12.51 16 32 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 33 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 34 H 0.08 3.39 8.14 -2.38 -0.02 3.37 16 35 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 Total: -1.00 -60.22 318.51 4.26 -55.96 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -0.18 Total: 31.04 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 2.97 Total: -16.64 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -0.24 Total: -72.61 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.25 Total: -41.23 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -60.22 4.26 -55.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.681 kcal (2) G-P(sol) polarization free energy of solvation -60.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds