Wall clock time and date at job start Tue Mar 31 2020 06:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99694 * 2 1 4 4 H 1.48500 * 109.46959 * 275.65058 * 3 2 1 5 5 H 1.48494 * 109.47379 * 35.64956 * 3 2 1 6 6 H 1.48497 * 109.47339 * 155.65617 * 3 2 1 7 7 C 1.37876 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99764 * 348.87510 * 7 2 1 9 9 C 1.50703 * 119.99822 * 168.87484 * 7 2 1 10 10 C 1.52989 * 115.55100 * 323.06982 * 9 7 2 11 11 O 1.45200 * 109.47133 * 183.97051 * 10 9 7 12 12 C 1.34770 * 116.99928 * 184.89353 * 11 10 9 13 13 O 1.21517 * 120.00486 * 354.88433 * 12 11 10 14 14 C 1.47292 * 119.99783 * 175.16582 * 12 11 10 15 15 C 1.39811 * 120.21185 * 5.32759 * 14 12 11 16 16 C 1.37818 * 119.91254 * 180.02562 * 15 14 12 17 17 Cl 1.73594 * 119.83546 * 179.97438 * 16 15 14 18 18 C 1.38721 * 120.33209 * 0.02862 * 16 15 14 19 19 C 1.37953 * 120.42397 * 359.95110 * 18 16 15 20 20 C 1.38948 * 120.08387 * 359.76936 * 19 18 16 21 21 N 1.38884 * 120.16875 * 180.27875 * 20 19 18 22 22 C 1.53005 * 117.49650 * 108.74410 * 9 7 2 23 23 C 1.53001 * 117.49653 * 177.39746 * 9 7 2 24 24 H 0.96998 * 120.00292 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47451 * 63.97247 * 10 9 7 26 26 H 1.09007 * 109.47565 * 303.97240 * 10 9 7 27 27 H 1.08003 * 120.04210 * 359.97438 * 15 14 12 28 28 H 1.08003 * 119.79183 * 179.97438 * 18 16 15 29 29 H 1.08004 * 119.95706 * 180.02562 * 19 18 16 30 30 H 0.97004 * 119.99992 * 189.28219 * 21 20 19 31 31 H 0.96999 * 119.99792 * 9.28457 * 21 20 19 32 32 H 1.08997 * 117.49629 * 215.00273 * 22 9 7 33 33 H 1.08998 * 117.49876 * 0.02562 * 22 9 7 34 34 H 1.09006 * 117.49939 * 359.97438 * 23 9 7 35 35 H 1.09000 * 117.49661 * 144.97476 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3771 2.1154 -1.3933 5 1 1.5113 2.6153 0.8160 6 1 3.6012 1.4088 0.5771 7 6 2.0046 -1.1940 0.0005 8 1 1.4798 -2.1204 0.1814 9 6 3.4904 -1.2062 -0.2513 10 6 3.9933 -0.1939 -1.2822 11 8 5.4180 -0.3820 -1.4902 12 6 6.0402 0.5000 -2.2972 13 8 5.3950 1.3447 -2.8862 14 6 7.5015 0.4363 -2.4700 15 6 8.2340 -0.6033 -1.8889 16 6 9.6012 -0.6566 -2.0541 17 17 10.5087 -1.9479 -1.3312 18 6 10.2559 0.3169 -2.7942 19 6 9.5468 1.3485 -3.3739 20 6 8.1671 1.4162 -3.2234 21 7 7.4508 2.4507 -3.8111 22 6 4.4052 -1.5215 0.9340 23 6 4.2083 -2.5554 -0.1775 24 1 -0.4850 0.8400 -0.0004 25 1 3.8096 0.8171 -0.9183 26 1 3.4658 -0.3422 -2.2245 27 1 7.7291 -1.3630 -1.3107 28 1 11.3277 0.2668 -2.9177 29 1 10.0642 2.1023 -3.9490 30 1 6.5129 2.5743 -3.5965 31 1 7.8884 3.0497 -4.4361 32 1 5.3653 -1.0075 0.9792 33 1 3.9323 -1.7204 1.8957 34 1 3.6060 -3.4340 0.0537 35 1 5.0386 -2.7218 -0.8637 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088256794.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:53 Heat of formation + Delta-G solvation = -45.005361 kcal Electronic energy + Delta-G solvation = -21240.957859 eV Core-core repulsion = 17844.437244 eV Total energy + Delta-G solvation = -3396.520616 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.92135 -40.20905 -38.81735 -37.51156 -37.00537 -35.25160 -34.44202 -32.64930 -29.87669 -29.42833 -27.40589 -25.23461 -23.47447 -23.11777 -22.20787 -21.13400 -19.34718 -18.87284 -18.23796 -18.01230 -17.70603 -17.52973 -16.69991 -16.28660 -15.62181 -15.39735 -15.26030 -14.99508 -14.82365 -14.42844 -14.36717 -13.68626 -13.41479 -13.15932 -13.05123 -12.75033 -12.72734 -12.45465 -12.11409 -12.00779 -11.79359 -11.54832 -11.42411 -11.25717 -11.17672 -10.68819 -10.34237 -10.22887 -8.67508 -8.46837 -6.43781 -0.38134 0.31184 1.19165 1.22601 1.24658 1.29053 1.34745 1.58022 2.16052 2.62156 2.72755 2.80997 3.32490 3.48212 3.70808 3.89943 3.96002 4.08202 4.14806 4.18148 4.31880 4.43607 4.71312 4.80603 4.83866 4.92393 4.96686 5.02202 5.16852 5.20423 5.30987 5.52724 5.54012 5.56995 6.17016 6.28369 6.55760 6.59433 6.82015 7.15378 8.69532 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019541 B = 0.004829 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.537729 B = 5796.333620 C = 6946.641664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.032 3.968 3 Si 0.928 3.072 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.248 1.248 7 C -0.486 4.486 8 H 0.052 0.948 9 C -0.033 4.033 10 C 0.099 3.901 11 O -0.341 6.341 12 C 0.507 3.493 13 O -0.547 6.547 14 C -0.230 4.230 15 C -0.008 4.008 16 C -0.117 4.117 17 Cl -0.070 7.070 18 C -0.012 4.012 19 C -0.190 4.190 20 C 0.282 3.718 21 N -0.847 5.847 22 C -0.182 4.182 23 C -0.156 4.156 24 H 0.272 0.728 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.141 0.859 28 H 0.171 0.829 29 H 0.176 0.824 30 H 0.409 0.591 31 H 0.414 0.586 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.219 3.617 -7.327 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.168 4.168 3 Si 0.757 3.243 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.173 1.173 7 C -0.523 4.523 8 H 0.070 0.930 9 C -0.034 4.034 10 C 0.026 3.974 11 O -0.256 6.256 12 C 0.357 3.643 13 O -0.440 6.440 14 C -0.237 4.237 15 C -0.027 4.027 16 C -0.146 4.146 17 Cl -0.041 7.041 18 C -0.032 4.032 19 C -0.212 4.212 20 C 0.168 3.832 21 N -0.391 5.391 22 C -0.220 4.220 23 C -0.193 4.193 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.158 0.842 28 H 0.188 0.812 29 H 0.193 0.807 30 H 0.248 0.752 31 H 0.245 0.755 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 24.809 3.835 -7.413 26.176 hybrid contribution -0.926 0.849 0.004 1.256 sum 23.883 4.684 -7.409 25.441 Atomic orbital electron populations 1.69992 1.07742 1.28419 1.50559 1.25640 0.95230 1.01973 0.93968 0.86232 0.79190 0.80315 0.78575 1.20213 1.21262 1.17305 1.20450 0.89653 0.94030 1.48206 0.92979 1.19272 0.92368 0.95799 0.95957 1.23098 0.75830 0.99087 0.99408 1.86498 1.25375 1.51955 1.61815 1.21564 0.89346 0.77863 0.75521 1.90487 1.67862 1.37819 1.47849 1.18402 0.87812 1.02925 1.14583 1.21113 0.92641 0.95240 0.93726 1.20538 0.91452 0.95862 1.06725 1.98363 1.73976 1.49222 1.82549 1.21391 1.01873 0.89673 0.90238 1.20924 0.89688 1.02899 1.07680 1.18053 0.92123 0.85537 0.87464 1.43432 1.16102 1.31143 1.48457 1.23087 1.00556 1.04339 0.94015 1.22797 1.02162 0.92244 1.02080 0.91891 0.93003 0.91902 0.84153 0.81152 0.80669 0.75214 0.75477 0.89101 0.89823 0.89798 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.13 13.96 21.45 0.30 -56.83 16 2 C 0.03 1.85 5.43 84.65 0.46 2.31 16 3 Si 0.93 45.82 24.24 68.60 1.66 47.48 16 4 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.25 -11.64 6.37 99.48 0.63 -11.00 16 7 C -0.49 -27.70 9.57 25.60 0.25 -27.46 16 8 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 9 C -0.03 -1.57 1.81 -52.93 -0.10 -1.67 16 10 C 0.10 4.50 4.25 71.98 0.31 4.81 16 11 O -0.34 -13.27 7.75 -56.81 -0.44 -13.71 16 12 C 0.51 18.16 7.87 70.20 0.55 18.71 16 13 O -0.55 -21.35 13.44 19.78 0.27 -21.09 16 14 C -0.23 -6.34 5.89 -19.99 -0.12 -6.45 16 15 C -0.01 -0.19 9.38 22.55 0.21 0.02 16 16 C -0.12 -2.27 6.31 22.29 0.14 -2.13 16 17 Cl -0.07 -1.30 28.94 -2.72 -0.08 -1.38 16 18 C -0.01 -0.17 9.81 22.32 0.22 0.05 16 19 C -0.19 -2.61 9.88 22.37 0.22 -2.39 16 20 C 0.28 6.03 6.76 38.72 0.26 6.29 16 21 N -0.85 -16.82 8.85 -50.92 -0.45 -17.27 16 22 C -0.18 -7.51 9.66 30.62 0.30 -7.21 16 23 C -0.16 -6.24 9.63 30.62 0.29 -5.94 16 24 H 0.27 15.60 8.31 -92.71 -0.77 14.82 16 25 H 0.05 2.50 2.50 -2.39 -0.01 2.49 16 26 H 0.06 2.98 8.14 -2.38 -0.02 2.96 16 27 H 0.14 3.56 7.62 -2.91 -0.02 3.53 16 28 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 29 H 0.18 1.11 8.06 -2.91 -0.02 1.08 16 30 H 0.41 10.57 5.48 -92.92 -0.51 10.06 16 31 H 0.41 4.94 8.85 -92.71 -0.82 4.12 16 32 H 0.09 3.42 7.79 -2.39 -0.02 3.40 16 33 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 34 H 0.08 3.33 8.14 -2.38 -0.02 3.31 16 35 H 0.10 3.62 7.53 -2.39 -0.02 3.60 16 Total: -1.00 -67.46 310.69 4.01 -63.45 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -0.25 Total: 20.39 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 2.99 Total: -21.07 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -0.15 Total: -74.10 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -0.17 Total: -34.79 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.66 Total: 47.48 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -67.46 4.01 -63.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256794.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.449 kcal (2) G-P(sol) polarization free energy of solvation -67.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds