Wall clock time and date at job start Tue Mar 31 2020 07:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47306 * 223.02363 * 3 2 1 5 5 N 1.46891 * 109.47339 * 174.87916 * 4 3 2 6 6 C 1.46905 * 110.99948 * 199.72977 * 5 4 3 7 7 C 1.50699 * 109.46942 * 66.04539 * 6 5 4 8 8 H 1.08004 * 120.00225 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00190 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99888 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00416 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47093 * 60.00181 * 11 9 7 13 13 H 1.48497 * 109.47406 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47103 * 300.00341 * 11 9 7 15 15 C 1.46901 * 111.00328 * 75.77824 * 5 4 3 16 16 C 1.50705 * 109.47050 * 199.75399 * 15 5 4 17 17 C 1.33387 * 122.53426 * 264.49616 * 16 15 5 18 18 S 1.75894 * 109.58741 * 179.76021 * 17 16 15 19 19 C 1.75881 * 90.97048 * 0.33896 * 18 17 16 20 20 N 1.48036 * 125.20107 * 179.91759 * 19 18 17 21 21 O 1.21805 * 120.00080 * 179.69665 * 20 19 18 22 22 O 1.21800 * 119.99959 * 359.42791 * 20 19 18 23 23 C 1.33393 * 109.59482 * 359.66281 * 19 18 17 24 24 H 1.09004 * 109.47370 * 103.02602 * 3 2 1 25 25 H 1.09005 * 109.47227 * 343.02601 * 3 2 1 26 26 H 1.08999 * 109.46863 * 54.87246 * 4 3 2 27 27 H 1.08998 * 109.46962 * 294.88090 * 4 3 2 28 28 H 1.08998 * 109.47135 * 186.04504 * 6 5 4 29 29 H 1.08994 * 109.47352 * 306.04454 * 6 5 4 30 30 H 0.96996 * 120.00157 * 179.97438 * 10 9 7 31 31 H 1.08995 * 109.47062 * 79.75205 * 15 5 4 32 32 H 1.09005 * 109.46587 * 319.74781 * 15 5 4 33 33 H 1.07998 * 125.20778 * 0.04047 * 17 16 15 34 34 H 1.07993 * 122.53904 * 180.28383 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 1.0555 0.9842 5 7 4.5813 0.9731 1.0759 6 6 5.0683 1.6086 2.3076 7 6 4.5895 0.8231 3.5012 8 1 3.9844 -0.0602 3.3591 9 6 4.9248 1.2313 4.7747 10 7 5.6621 2.3065 4.9479 11 14 4.3308 0.2580 6.2544 12 1 4.8505 -1.1308 6.1744 13 1 4.8231 0.9002 7.4995 14 1 2.8461 0.2310 6.2655 15 6 5.2171 1.5651 -0.1087 16 6 6.6294 1.0531 -0.2295 17 6 7.6790 1.7245 0.2468 18 16 9.1525 0.8182 -0.0716 19 6 8.2339 -0.4542 -0.8658 20 7 8.8126 -1.6792 -1.4623 21 8 8.0850 -2.5039 -1.9859 22 8 10.0167 -1.8601 -1.4339 23 6 6.9355 -0.1491 -0.8435 24 1 2.9713 0.2325 -1.0012 25 1 2.9718 -0.9821 0.3000 26 1 2.6813 0.8763 1.9669 27 1 2.8306 2.0472 0.6347 28 1 6.1580 1.6292 2.2995 29 1 4.6861 2.6277 2.3663 30 1 5.8977 2.5940 5.8438 31 1 5.2314 2.6504 -0.0093 32 1 4.6532 1.2892 -0.9998 33 1 7.6310 2.6765 0.7545 34 1 6.1805 -0.7916 -1.2716 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104066957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:53 Heat of formation + Delta-G solvation = 62.525477 kcal Electronic energy + Delta-G solvation = -20624.467890 eV Core-core repulsion = 17266.946619 eV Total energy + Delta-G solvation = -3357.521271 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.99130 -39.08664 -37.16811 -36.48982 -35.97641 -32.86141 -31.75778 -30.44818 -27.99072 -26.55732 -25.62770 -23.33960 -22.53175 -20.74531 -19.69975 -19.26337 -18.21667 -17.54080 -17.42884 -16.72913 -16.42679 -15.43168 -15.05719 -14.74802 -14.35468 -13.84695 -13.58084 -13.24249 -13.12314 -12.77144 -12.45324 -12.17862 -12.07486 -12.01803 -11.67698 -11.57619 -11.32212 -11.17388 -11.15330 -10.98736 -10.87548 -10.72372 -10.47993 -10.08319 -9.44015 -9.38130 -8.72127 -8.61209 -7.67699 -6.21362 -4.23027 -0.25082 0.62742 1.22025 1.41173 1.74228 2.33976 2.88454 2.92705 3.23493 3.28498 3.31373 4.07120 4.29881 4.63857 4.75417 4.85492 5.07513 5.16397 5.22117 5.31590 5.39745 5.51687 5.54761 5.68384 5.90515 6.06783 6.12067 6.29274 6.37091 6.93306 7.03235 7.54268 7.62867 7.69470 7.74976 7.89921 8.24797 8.83387 9.42602 10.89229 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.005247 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.267357 B = 5335.249195 C = 6907.518867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.217 3.783 3 C -0.028 4.028 4 C 0.065 3.935 5 N -0.532 5.532 6 C 0.192 3.808 7 C -0.514 4.514 8 H 0.065 0.935 9 C 0.060 3.940 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.105 3.895 16 C -0.095 4.095 17 C -0.145 4.145 18 S 0.224 5.776 19 C -0.193 4.193 20 N 0.067 4.933 21 O -0.153 6.153 22 O -0.169 6.169 23 C 0.000 4.000 24 H 0.100 0.900 25 H 0.117 0.883 26 H 0.099 0.901 27 H 0.034 0.966 28 H 0.036 0.964 29 H -0.005 1.005 30 H 0.263 0.737 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.187 0.813 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.650 0.343 -11.854 12.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.101 4.101 3 C -0.069 4.069 4 C -0.064 4.064 5 N -0.256 5.256 6 C 0.068 3.932 7 C -0.552 4.552 8 H 0.083 0.917 9 C -0.142 4.142 10 N -0.536 5.536 11 Si 0.723 3.277 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.026 4.026 16 C -0.107 4.107 17 C -0.284 4.284 18 S 0.489 5.511 19 C -0.394 4.394 20 N 0.586 4.414 21 O -0.370 6.370 22 O -0.382 6.382 23 C -0.038 4.038 24 H 0.118 0.882 25 H 0.135 0.865 26 H 0.117 0.883 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.013 0.987 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.205 0.795 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.515 0.773 -11.083 11.992 hybrid contribution -1.305 -0.184 0.614 1.454 sum 3.211 0.589 -10.468 10.965 Atomic orbital electron populations 1.81183 1.13261 1.09307 1.09295 1.29310 0.95393 0.92693 0.92663 1.19428 0.80680 1.04274 1.02475 1.21905 0.89336 0.95009 1.00179 1.62029 1.03666 1.57282 1.02626 1.19815 0.96239 0.92655 0.84506 1.21075 1.32883 1.11395 0.89881 0.91716 1.24941 0.95090 0.95104 0.99092 1.69911 1.37244 1.23786 1.22648 0.86595 0.79172 0.80250 0.81685 1.20079 1.21283 1.20173 1.20823 0.89070 0.97041 0.95642 1.18693 0.97545 0.93858 1.00629 1.26344 0.94793 1.04957 1.02306 1.84584 1.06712 1.08240 1.51534 1.25816 0.98992 0.96048 1.18539 1.42511 1.00604 1.00321 0.97991 1.94549 1.59522 1.38434 1.44490 1.94558 0.97107 1.82758 1.63758 1.20198 0.93723 0.95952 0.93878 0.88209 0.86475 0.88252 0.94736 0.94626 0.98702 0.92706 0.93299 0.90125 0.79550 0.81586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.25 18.54 42.15 0.78 -6.47 16 2 C 0.22 2.87 15.43 -20.76 -0.32 2.55 16 3 C -0.03 -0.30 5.75 -29.52 -0.17 -0.47 16 4 C 0.07 0.92 4.75 -3.83 -0.02 0.91 16 5 N -0.53 -8.42 4.34 -237.52 -1.03 -9.45 16 6 C 0.19 4.07 4.55 -4.97 -0.02 4.05 16 7 C -0.51 -12.62 8.23 -34.44 -0.28 -12.91 16 8 H 0.06 1.57 7.31 -52.48 -0.38 1.19 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -24.24 13.29 55.43 0.74 -23.50 16 11 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 13 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 C 0.10 1.27 5.08 -4.97 -0.03 1.24 16 16 C -0.10 -1.17 4.94 -106.25 -0.52 -1.69 16 17 C -0.15 -1.73 9.76 29.04 0.28 -1.45 16 18 S 0.22 2.65 23.14 -107.50 -2.49 0.16 16 19 C -0.19 -2.61 7.50 -11.32 -0.08 -2.70 16 20 N 0.07 1.02 4.46 33.44 0.15 1.17 16 21 O -0.15 -2.35 18.94 -29.46 -0.56 -2.91 16 22 O -0.17 -2.66 19.08 -29.46 -0.56 -3.23 16 23 C 0.00 -0.01 9.61 -41.21 -0.40 -0.40 16 24 H 0.10 0.77 6.89 -51.93 -0.36 0.41 16 25 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.10 1.70 6.57 -51.93 -0.34 1.36 16 27 H 0.03 0.46 8.00 -51.93 -0.42 0.04 16 28 H 0.04 0.80 6.48 -51.93 -0.34 0.46 16 29 H 0.00 -0.11 8.12 -51.93 -0.42 -0.53 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.52 16 31 H 0.05 0.59 7.95 -51.93 -0.41 0.17 16 32 H 0.08 0.73 6.56 -51.93 -0.34 0.39 16 33 H 0.19 2.03 8.06 -52.49 -0.42 1.60 16 34 H 0.17 1.74 8.01 -52.49 -0.42 1.32 16 LS Contribution 324.11 15.07 4.88 4.88 Total: -1.00 -29.35 324.11 -8.18 -37.53 By element: Atomic # 1 Polarization: -0.66 SS G_CDS: -3.41 Total: -4.07 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -1.66 Total: -9.42 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.63 Total: -38.25 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -1.12 Total: -6.14 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.49 Total: 0.16 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.35 -8.18 -37.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104066957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.056 kcal (2) G-P(sol) polarization free energy of solvation -29.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds