Wall clock time and date at job start Tue Mar 31 2020 07:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47306 * 223.02363 * 3 2 1 5 5 N 1.46891 * 109.47339 * 174.87916 * 4 3 2 6 6 C 1.46905 * 110.99948 * 199.72977 * 5 4 3 7 7 C 1.50699 * 109.46942 * 66.04539 * 6 5 4 8 8 H 1.08004 * 120.00225 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00190 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99888 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00416 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47093 * 60.00181 * 11 9 7 13 13 H 1.48497 * 109.47406 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47103 * 300.00341 * 11 9 7 15 15 C 1.46901 * 111.00328 * 75.77824 * 5 4 3 16 16 C 1.50705 * 109.47050 * 199.75399 * 15 5 4 17 17 C 1.33387 * 122.53426 * 264.49616 * 16 15 5 18 18 S 1.75894 * 109.58741 * 179.76021 * 17 16 15 19 19 C 1.75881 * 90.97048 * 0.33896 * 18 17 16 20 20 N 1.48036 * 125.20107 * 179.91759 * 19 18 17 21 21 O 1.21805 * 120.00080 * 179.69665 * 20 19 18 22 22 O 1.21800 * 119.99959 * 359.42791 * 20 19 18 23 23 C 1.33393 * 109.59482 * 359.66281 * 19 18 17 24 24 H 1.09004 * 109.47370 * 103.02602 * 3 2 1 25 25 H 1.09005 * 109.47227 * 343.02601 * 3 2 1 26 26 H 1.08999 * 109.46863 * 54.87246 * 4 3 2 27 27 H 1.08998 * 109.46962 * 294.88090 * 4 3 2 28 28 H 1.08998 * 109.47135 * 186.04504 * 6 5 4 29 29 H 1.08994 * 109.47352 * 306.04454 * 6 5 4 30 30 H 0.96996 * 120.00157 * 179.97438 * 10 9 7 31 31 H 1.08995 * 109.47062 * 79.75205 * 15 5 4 32 32 H 1.09005 * 109.46587 * 319.74781 * 15 5 4 33 33 H 1.07998 * 125.20778 * 0.04047 * 17 16 15 34 34 H 1.07993 * 122.53904 * 180.28383 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 1.0555 0.9842 5 7 4.5813 0.9731 1.0759 6 6 5.0683 1.6086 2.3076 7 6 4.5895 0.8231 3.5012 8 1 3.9844 -0.0602 3.3591 9 6 4.9248 1.2313 4.7747 10 7 5.6621 2.3065 4.9479 11 14 4.3308 0.2580 6.2544 12 1 4.8505 -1.1308 6.1744 13 1 4.8231 0.9002 7.4995 14 1 2.8461 0.2310 6.2655 15 6 5.2171 1.5651 -0.1087 16 6 6.6294 1.0531 -0.2295 17 6 7.6790 1.7245 0.2468 18 16 9.1525 0.8182 -0.0716 19 6 8.2339 -0.4542 -0.8658 20 7 8.8126 -1.6792 -1.4623 21 8 8.0850 -2.5039 -1.9859 22 8 10.0167 -1.8601 -1.4339 23 6 6.9355 -0.1491 -0.8435 24 1 2.9713 0.2325 -1.0012 25 1 2.9718 -0.9821 0.3000 26 1 2.6813 0.8763 1.9669 27 1 2.8306 2.0472 0.6347 28 1 6.1580 1.6292 2.2995 29 1 4.6861 2.6277 2.3663 30 1 5.8977 2.5940 5.8438 31 1 5.2314 2.6504 -0.0093 32 1 4.6532 1.2892 -0.9998 33 1 7.6310 2.6765 0.7545 34 1 6.1805 -0.7916 -1.2716 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104066957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:52 Heat of formation + Delta-G solvation = 45.952689 kcal Electronic energy + Delta-G solvation = -20625.186540 eV Core-core repulsion = 17266.946619 eV Total energy + Delta-G solvation = -3358.239921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.11481 -40.12847 -38.28215 -37.63490 -37.17194 -34.69674 -32.78805 -31.62764 -29.42974 -27.61025 -26.94322 -24.80946 -23.67482 -22.02450 -20.72462 -20.35603 -19.27494 -18.66622 -18.61289 -18.26775 -17.55414 -16.69644 -16.31779 -16.24004 -15.36871 -15.13085 -14.73749 -14.33494 -14.21331 -13.94579 -13.83570 -13.51350 -13.24630 -13.23797 -12.93306 -12.74149 -12.67426 -12.61639 -12.42692 -12.33447 -12.20754 -12.07774 -11.75721 -11.51716 -11.19740 -10.55961 -10.37684 -9.68337 -8.98844 -8.16730 -6.21722 -1.30602 -0.36053 0.14817 0.42611 0.73376 1.35815 1.42571 1.44362 1.50109 1.83040 1.90384 2.42348 3.04201 3.19033 3.65737 3.70077 3.86543 4.16215 4.24083 4.34778 4.44574 4.58611 4.62830 4.78323 4.94972 5.10112 5.10610 5.17326 5.21746 5.39279 5.42679 5.71857 6.12917 6.34086 6.45796 6.63821 6.71181 6.94807 7.47044 8.93052 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.005247 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.267357 B = 5335.249195 C = 6907.518867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.242 3.758 3 C -0.014 4.014 4 C 0.066 3.934 5 N -0.533 5.533 6 C 0.206 3.794 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.010 3.990 10 N -0.928 5.928 11 Si 0.945 3.055 12 H -0.273 1.273 13 H -0.289 1.289 14 H -0.273 1.273 15 C 0.104 3.896 16 C -0.103 4.103 17 C -0.144 4.144 18 S 0.237 5.763 19 C -0.215 4.215 20 N 0.068 4.932 21 O -0.155 6.155 22 O -0.197 6.197 23 C 0.012 3.988 24 H 0.144 0.856 25 H 0.129 0.871 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.024 0.976 29 H -0.029 1.029 30 H 0.261 0.739 31 H 0.053 0.947 32 H 0.123 0.877 33 H 0.195 0.805 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -0.010 -13.107 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.075 4.075 3 C -0.054 4.054 4 C -0.064 4.064 5 N -0.257 5.257 6 C 0.080 3.920 7 C -0.555 4.555 8 H 0.082 0.918 9 C -0.188 4.188 10 N -0.569 5.569 11 Si 0.772 3.228 12 H -0.198 1.198 13 H -0.215 1.215 14 H -0.199 1.199 15 C -0.026 4.026 16 C -0.115 4.115 17 C -0.283 4.283 18 S 0.503 5.497 19 C -0.416 4.416 20 N 0.583 4.417 21 O -0.373 6.373 22 O -0.404 6.404 23 C -0.025 4.025 24 H 0.162 0.838 25 H 0.147 0.853 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.042 0.958 29 H -0.012 1.012 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.141 0.859 33 H 0.212 0.788 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 4.116 0.400 -12.352 13.026 hybrid contribution -1.188 -0.020 0.981 1.541 sum 2.928 0.380 -11.371 11.748 Atomic orbital electron populations 1.81216 1.15005 1.11037 1.11173 1.29698 0.95673 0.91108 0.91008 1.19478 0.78682 1.03573 1.03681 1.21825 0.88173 0.96857 0.99511 1.61860 1.04711 1.57054 1.02059 1.19438 0.95272 0.91121 0.86176 1.21504 1.31691 1.11167 0.91150 0.91843 1.25618 0.95658 0.95983 1.01552 1.70006 1.38886 1.25247 1.22802 0.85795 0.78734 0.79096 0.79160 1.19841 1.21480 1.19879 1.20988 0.89116 0.97215 0.95271 1.18763 0.97716 0.94023 1.01045 1.26606 0.94996 1.05205 1.01444 1.84595 1.06467 1.07596 1.51059 1.25940 0.99868 0.95926 1.19912 1.42690 1.00481 1.00736 0.97810 1.94523 1.59341 1.38984 1.44484 1.94555 0.97577 1.83381 1.64869 1.20435 0.93607 0.95773 0.92703 0.83820 0.85314 0.91814 0.93776 0.95837 1.01163 0.93011 0.92904 0.85918 0.78809 0.79453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -15.51 18.54 20.01 0.37 -15.14 16 2 C 0.24 5.78 15.43 89.44 1.38 7.16 16 3 C -0.01 -0.24 5.75 28.79 0.17 -0.08 16 4 C 0.07 1.70 4.75 86.31 0.41 2.11 16 5 N -0.53 -15.51 4.34 -905.38 -3.93 -19.44 16 6 C 0.21 8.57 4.55 85.56 0.39 8.96 16 7 C -0.52 -25.18 8.23 25.60 0.21 -24.97 16 8 H 0.06 3.04 7.31 -2.91 -0.02 3.02 16 9 C 0.01 0.54 5.46 84.65 0.46 1.00 16 10 N -0.93 -50.61 13.29 21.45 0.28 -50.33 16 11 Si 0.95 41.62 29.54 68.60 2.03 43.64 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 13 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 15 C 0.10 2.12 5.08 85.56 0.43 2.56 16 16 C -0.10 -2.23 4.94 -20.92 -0.10 -2.33 16 17 C -0.14 -3.15 9.76 66.72 0.65 -2.50 16 18 S 0.24 5.30 23.14 -56.49 -1.31 3.99 16 19 C -0.22 -5.42 7.50 80.83 0.61 -4.81 16 20 N 0.07 1.99 4.46 -48.12 -0.21 1.78 16 21 O -0.16 -4.53 18.94 18.88 0.36 -4.17 16 22 O -0.20 -6.15 19.08 18.89 0.36 -5.79 16 23 C 0.01 0.26 9.61 21.22 0.20 0.46 16 24 H 0.14 1.31 6.89 -2.38 -0.02 1.29 16 25 H 0.13 2.07 8.14 -2.38 -0.02 2.05 16 26 H 0.06 2.12 6.57 -2.39 -0.02 2.10 16 27 H 0.04 1.06 8.00 -2.39 -0.02 1.04 16 28 H 0.02 1.04 6.48 -2.39 -0.02 1.02 16 29 H -0.03 -1.35 8.12 -2.39 -0.02 -1.37 16 30 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 31 H 0.05 1.09 7.95 -2.39 -0.02 1.08 16 32 H 0.12 1.51 6.56 -2.38 -0.02 1.49 16 33 H 0.19 3.92 8.06 -2.91 -0.02 3.90 16 34 H 0.19 3.11 8.01 -2.91 -0.02 3.09 16 Total: -1.00 -64.33 324.11 3.90 -60.43 By element: Atomic # 1 Polarization: -3.66 SS G_CDS: 1.14 Total: -2.52 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 4.81 Total: -12.45 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -3.49 Total: -83.13 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.72 Total: -9.95 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -1.31 Total: 3.99 kcal Total: -64.33 3.90 -60.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104066957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.382 kcal (2) G-P(sol) polarization free energy of solvation -64.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds