Wall clock time and date at job start Tue Mar 31 2020 06:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 119.99718 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99677 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99857 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.38796 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00235 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00265 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47338 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00056 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00396 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00328 * 179.97438 * 13 11 10 15 15 H 1.08999 * 110.27008 * 325.69869 * 14 13 11 16 16 C 1.54348 * 110.30477 * 203.62510 * 14 13 11 17 17 C 1.54598 * 102.27409 * 267.40294 * 16 14 13 18 18 C 1.51382 * 105.18839 * 333.63012 * 17 16 14 19 19 C 1.38519 * 130.36020 * 197.21012 * 18 17 16 20 20 C 1.38061 * 120.25082 * 179.97438 * 19 18 17 21 21 C 1.38470 * 119.90873 * 0.02562 * 20 19 18 22 22 F 1.35107 * 120.05924 * 180.02562 * 21 20 19 23 23 C 1.38328 * 119.88531 * 0.02562 * 21 20 19 24 24 C 1.38232 * 109.75218 * 17.21493 * 18 17 16 25 25 H 0.97001 * 119.99591 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46589 * 299.99965 * 10 9 7 27 27 H 1.08997 * 109.47188 * 59.99864 * 10 9 7 28 28 H 0.97008 * 119.99794 * 359.97438 * 13 11 10 29 29 H 1.09001 * 110.81885 * 25.65393 * 16 14 13 30 30 H 1.08994 * 110.82483 * 149.20531 * 16 14 13 31 31 H 1.08996 * 110.28353 * 214.70837 * 17 16 14 32 32 H 1.08995 * 110.39349 * 92.60613 * 17 16 14 33 33 H 1.08005 * 119.87581 * 359.97438 * 19 18 17 34 34 H 1.08000 * 120.04704 * 180.02562 * 20 19 18 35 35 H 1.07994 * 119.90584 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 3.1040 1.6965 1.2125 6 1 1.2853 2.7465 -0.0006 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7913 -5.5023 0.0009 13 7 2.8443 -6.3431 0.0022 14 6 2.3306 -7.7150 0.0024 15 1 1.4070 -7.7724 0.5783 16 6 3.3847 -8.6815 0.5830 17 6 4.1330 -9.1522 -0.6852 18 6 3.1308 -9.0138 -1.8114 19 6 3.1263 -9.5672 -3.0812 20 6 2.0910 -9.2975 -3.9538 21 6 1.0530 -8.4703 -3.5590 22 9 0.0380 -8.2048 -4.4102 23 6 1.0571 -7.9164 -2.2914 24 6 2.0952 -8.1879 -1.4162 25 1 -0.4849 -0.8401 -0.0004 26 1 3.1252 -3.7316 -0.8875 27 1 3.1239 -3.7309 0.8925 28 1 3.8012 -6.1834 0.0025 29 1 4.0590 -8.1578 1.2606 30 1 2.9051 -9.5219 1.0849 31 1 4.4405 -10.1924 -0.5784 32 1 5.0006 -8.5192 -0.8712 33 1 3.9359 -10.2121 -3.3899 34 1 2.0906 -9.7310 -4.9429 35 1 0.2476 -7.2716 -1.9830 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106680339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:07 Heat of formation + Delta-G solvation = -90.472535 kcal Electronic energy + Delta-G solvation = -20477.339776 eV Core-core repulsion = 17093.264052 eV Total energy + Delta-G solvation = -3384.075724 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.99454 -41.65640 -40.11013 -37.03722 -34.76711 -34.38776 -32.40570 -30.94147 -29.61725 -27.55166 -26.97991 -24.02853 -22.54088 -21.94958 -21.68802 -20.44557 -18.53668 -18.16774 -17.55056 -17.34721 -16.75893 -16.60047 -16.46892 -16.26986 -15.72914 -15.30296 -15.15809 -14.86498 -14.62812 -14.50747 -14.29259 -13.88528 -13.60729 -13.39085 -13.00007 -12.74283 -12.59409 -12.16724 -12.10294 -11.97860 -11.96026 -11.56495 -11.12116 -11.10829 -10.34602 -10.30215 -10.05773 -9.50864 -8.94249 -8.89309 -6.29657 0.03586 0.12605 1.18804 1.47620 1.51214 1.59959 1.80147 2.12842 2.33575 2.58894 3.01052 3.03284 3.12845 3.39582 3.51029 3.79854 3.90795 3.99480 4.04236 4.13503 4.18140 4.28675 4.34335 4.59527 4.67325 4.75932 4.89771 5.02388 5.06538 5.12276 5.20000 5.22052 5.41183 5.48289 5.62225 5.85821 6.12653 6.40133 7.04829 7.13524 8.49157 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021027 B = 0.003551 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.292141 B = 7883.959996 C = 8578.894730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.019 4.019 3 Si 1.137 2.863 4 H -0.264 1.264 5 H -0.261 1.261 6 H -0.281 1.281 7 C -0.614 4.614 8 H 0.076 0.924 9 S -0.198 6.198 10 C -0.108 4.108 11 C 0.533 3.467 12 O -0.562 6.562 13 N -0.698 5.698 14 C 0.176 3.824 15 H 0.073 0.927 16 C -0.113 4.113 17 C -0.075 4.075 18 C -0.089 4.089 19 C -0.077 4.077 20 C -0.141 4.141 21 C 0.063 3.937 22 F -0.155 7.155 23 C -0.148 4.148 24 C -0.104 4.104 25 H 0.260 0.740 26 H 0.108 0.892 27 H 0.116 0.884 28 H 0.419 0.581 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.173 0.827 34 H 0.161 0.839 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.504 -23.503 -2.477 28.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.222 4.222 3 Si 0.954 3.046 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.206 1.206 7 C -0.762 4.762 8 H 0.094 0.906 9 S 0.028 5.972 10 C -0.260 4.260 11 C 0.319 3.681 12 O -0.440 6.440 13 N -0.352 5.352 14 C 0.071 3.929 15 H 0.091 0.909 16 C -0.151 4.151 17 C -0.112 4.112 18 C -0.090 4.090 19 C -0.094 4.094 20 C -0.159 4.159 21 C 0.044 3.956 22 F -0.134 7.134 23 C -0.168 4.168 24 C -0.105 4.105 25 H 0.071 0.929 26 H 0.126 0.874 27 H 0.134 0.866 28 H 0.257 0.743 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.190 0.810 34 H 0.178 0.822 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.294 -22.232 -2.484 26.022 hybrid contribution 0.582 -0.787 -0.417 1.064 sum 13.875 -23.020 -2.900 27.034 Atomic orbital electron populations 1.70924 1.08079 1.29958 1.45937 1.27863 0.96278 1.06435 0.91619 0.82722 0.73945 0.69413 0.78505 1.18834 1.18548 1.20581 1.24041 0.96539 0.92745 1.62833 0.90563 1.85103 1.13289 1.01282 1.97483 1.23219 1.02135 0.93611 1.07025 1.20080 0.86425 0.86693 0.74950 1.90694 1.17400 1.85977 1.49884 1.45748 1.10241 1.04118 1.75108 1.20528 0.99555 0.81397 0.91393 0.90885 1.22691 0.96310 0.98180 0.97899 1.21237 0.96048 1.04767 0.89102 1.21117 0.95942 0.95861 0.96085 1.20889 0.98167 0.99067 0.91319 1.21392 0.93272 0.98702 1.02574 1.17892 0.88067 1.01400 0.88232 1.91461 1.58966 1.93032 1.69927 1.20737 1.00754 1.01742 0.93550 1.20814 0.94478 0.98336 0.96905 0.92949 0.87411 0.86596 0.74290 0.87193 0.87796 0.87045 0.87870 0.80965 0.82154 0.88235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.88 13.67 21.65 0.30 -58.59 16 2 C -0.02 -1.11 5.49 84.86 0.47 -0.65 16 3 Si 1.14 49.52 29.92 68.60 2.05 51.58 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.61 -35.73 9.50 67.95 0.65 -35.09 16 8 H 0.08 4.13 7.80 -2.91 -0.02 4.11 16 9 S -0.20 -11.08 19.60 -56.49 -1.11 -12.19 16 10 C -0.11 -4.30 6.16 71.23 0.44 -3.87 16 11 C 0.53 19.56 7.84 87.66 0.69 20.24 16 12 O -0.56 -26.08 15.51 -3.05 -0.05 -26.13 16 13 N -0.70 -16.88 5.09 -442.89 -2.26 -19.14 16 14 C 0.18 3.84 3.18 44.92 0.14 3.98 16 15 H 0.07 2.00 7.60 -2.39 -0.02 1.98 16 16 C -0.11 -1.17 6.68 31.60 0.21 -0.96 16 17 C -0.08 -0.59 6.78 30.61 0.21 -0.39 16 18 C -0.09 -1.43 6.14 -19.58 -0.12 -1.55 16 19 C -0.08 -1.08 10.04 22.29 0.22 -0.86 16 20 C -0.14 -2.67 10.03 22.28 0.22 -2.45 16 21 C 0.06 1.75 7.30 22.35 0.16 1.91 16 22 F -0.16 -4.84 17.27 44.97 0.78 -4.07 16 23 C -0.15 -4.59 10.02 22.35 0.22 -4.36 16 24 C -0.10 -2.51 5.76 -19.60 -0.11 -2.62 16 25 H 0.26 17.45 7.12 -92.71 -0.66 16.79 16 26 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 27 H 0.12 4.06 8.14 -2.40 -0.02 4.04 16 28 H 0.42 6.82 8.61 -92.70 -0.80 6.02 16 29 H 0.11 0.74 8.06 -2.39 -0.02 0.72 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.10 3.78 8.03 -2.91 -0.02 3.76 16 Total: -1.00 -83.46 321.34 3.55 -79.91 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.43 Total: 15.25 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 3.40 Total: -26.64 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -1.96 Total: -77.72 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.78 Total: -4.07 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 2.05 Total: 51.58 kcal Atomic # 16 Polarization: -11.08 SS G_CDS: -1.11 Total: -12.19 kcal Total: -83.46 3.55 -79.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106680339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.560 kcal (2) G-P(sol) polarization free energy of solvation -83.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds