Wall clock time and date at job start Tue Mar 31 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 120.00136 * 2 1 4 4 H 1.48502 * 109.47058 * 270.00081 * 3 2 1 5 5 H 1.48494 * 109.46915 * 30.00145 * 3 2 1 6 6 H 1.48504 * 109.46893 * 150.00000 * 3 2 1 7 7 C 1.38801 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99940 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99694 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.47148 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99736 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00207 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00193 * 179.97438 * 13 11 10 15 15 H 1.09003 * 110.34525 * 35.68214 * 14 13 11 16 16 C 1.54345 * 110.30340 * 157.80248 * 14 13 11 17 17 C 1.54341 * 102.38983 * 92.57045 * 16 14 13 18 18 C 1.51370 * 105.17846 * 26.35482 * 17 16 14 19 19 C 1.38510 * 130.36801 * 162.80875 * 18 17 16 20 20 C 1.38058 * 120.25616 * 180.02562 * 19 18 17 21 21 C 1.38485 * 119.90853 * 0.02562 * 20 19 18 22 22 F 1.35093 * 120.05941 * 179.72197 * 21 20 19 23 23 C 1.38325 * 119.87607 * 359.97438 * 21 20 19 24 24 C 1.38233 * 109.74840 * 342.81218 * 18 17 16 25 25 H 0.96998 * 119.99831 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47364 * 60.00318 * 10 9 7 27 27 H 1.09000 * 109.47783 * 299.99901 * 10 9 7 28 28 H 0.97005 * 120.00087 * 0.02562 * 13 11 10 29 29 H 1.08998 * 110.82046 * 210.79284 * 16 14 13 30 30 H 1.08994 * 110.82194 * 334.33894 * 16 14 13 31 31 H 1.09002 * 110.29887 * 267.42546 * 17 16 14 32 32 H 1.09004 * 110.30154 * 145.28772 * 17 16 14 33 33 H 1.08001 * 119.87057 * 0.02931 * 19 18 17 34 34 H 1.08006 * 120.04940 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.90073 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8439 -6.3432 0.0008 14 6 2.3302 -7.7152 0.0019 15 1 1.4192 -7.7792 -0.5932 16 6 3.3969 -8.6870 -0.5456 17 6 4.1175 -9.1461 0.7397 18 6 3.0923 -8.9978 1.8434 19 6 3.0611 -9.5398 3.1177 20 6 2.0079 -9.2624 3.9660 21 6 0.9778 -8.4396 3.5419 22 9 -0.0571 -8.1707 4.3675 23 6 1.0081 -7.8979 2.2695 24 6 2.0651 -8.1756 1.4194 25 1 -0.4850 0.8400 0.0004 26 1 3.1243 -3.7314 0.8906 27 1 3.1244 -3.7315 -0.8894 28 1 3.8008 -6.1836 0.0004 29 1 2.9286 -9.5320 -1.0502 30 1 4.0864 -8.1696 -1.2127 31 1 4.9805 -8.5101 0.9372 32 1 4.4272 -10.1872 0.6484 33 1 3.8639 -10.1818 3.4489 34 1 1.9868 -9.6872 4.9589 35 1 0.2048 -7.2566 1.9382 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106680341.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:10 Heat of formation + Delta-G solvation = -62.028882 kcal Electronic energy + Delta-G solvation = -20453.180954 eV Core-core repulsion = 17070.338639 eV Total energy + Delta-G solvation = -3382.842315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.89102 -40.64322 -38.71869 -36.02272 -33.19803 -32.43038 -31.38718 -29.43528 -28.71711 -26.48629 -25.45017 -23.16789 -21.42150 -21.11397 -20.38165 -17.91038 -17.38078 -16.75979 -16.40882 -15.96800 -15.58140 -15.45785 -15.01182 -14.81132 -14.71116 -14.23058 -13.86084 -13.70418 -13.22571 -13.12930 -12.64591 -12.55593 -12.20832 -11.92576 -11.83876 -11.47638 -11.27215 -11.09887 -11.05979 -11.02758 -10.76091 -9.82123 -9.53911 -9.10204 -9.07123 -8.97974 -8.59626 -8.24390 -6.50340 -6.21944 -3.92563 0.96150 1.08084 2.98518 3.04436 3.22191 3.26288 3.30261 3.44453 3.77103 3.95127 4.19787 4.20669 4.34103 4.68956 4.76198 4.83694 4.96814 5.02679 5.13280 5.14918 5.36614 5.49722 5.51018 5.56238 5.64544 5.69911 5.80862 5.87408 5.94255 6.04814 6.09435 6.12529 6.39210 6.56360 6.77314 7.59191 7.65811 8.34856 8.56934 9.23430 10.85512 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020984 B = 0.003554 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.006891 B = 7876.624313 C = 8581.404101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.728 5.728 14 C 0.184 3.816 15 H 0.100 0.900 16 C -0.126 4.126 17 C -0.081 4.081 18 C -0.103 4.103 19 C -0.087 4.087 20 C -0.149 4.149 21 C 0.094 3.906 22 F -0.138 7.138 23 C -0.117 4.117 24 C -0.080 4.080 25 H 0.268 0.732 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.399 0.601 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.205 -21.049 2.626 23.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.388 6.388 13 N -0.382 5.382 14 C 0.078 3.922 15 H 0.118 0.882 16 C -0.163 4.163 17 C -0.118 4.118 18 C -0.103 4.103 19 C -0.105 4.105 20 C -0.168 4.168 21 C 0.075 3.925 22 F -0.117 7.117 23 C -0.136 4.136 24 C -0.082 4.082 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.234 0.766 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.147 0.853 34 H 0.153 0.847 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.985 -21.244 2.638 22.848 hybrid contribution 2.163 1.474 0.362 2.643 sum 10.149 -19.770 3.000 22.425 Atomic orbital electron populations 1.70017 1.05958 1.27470 1.46829 1.24988 0.95016 0.99017 0.94509 0.86171 0.79425 0.81582 0.78349 1.20255 1.20737 1.19693 1.22868 0.94904 0.91669 1.59006 0.90940 1.85397 1.04818 0.96299 1.96716 1.23535 1.06651 0.95294 1.04915 1.20362 0.86598 0.86283 0.74752 1.90690 1.15303 1.85501 1.47266 1.46053 1.09935 1.04494 1.77669 1.20237 0.98480 0.81865 0.91570 0.88212 1.22588 0.97544 0.99037 0.97174 1.21066 0.96700 1.02383 0.91628 1.20642 0.96622 0.98096 0.94970 1.20378 0.97905 0.99849 0.92338 1.21032 0.94329 1.00275 1.01161 1.17561 0.86507 0.99521 0.88932 1.91510 1.56435 1.92552 1.71174 1.20840 1.00249 1.00548 0.91982 1.20698 0.93791 0.96798 0.96917 0.92170 0.89275 0.89170 0.76648 0.89302 0.89357 0.89881 0.90185 0.85301 0.84681 0.83999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 11 C 0.53 9.71 7.83 -10.98 -0.09 9.62 16 12 O -0.51 -11.27 15.39 5.56 0.09 -11.19 16 13 N -0.73 -9.37 5.10 -53.92 -0.28 -9.65 16 14 C 0.18 2.12 3.17 -68.05 -0.22 1.90 16 15 H 0.10 1.31 7.65 -51.93 -0.40 0.91 16 16 C -0.13 -0.92 6.66 -25.32 -0.17 -1.08 16 17 C -0.08 -0.56 6.77 -26.85 -0.18 -0.74 16 18 C -0.10 -1.02 6.14 -104.19 -0.64 -1.66 16 19 C -0.09 -0.80 10.04 -39.55 -0.40 -1.20 16 20 C -0.15 -1.58 10.03 -39.56 -0.40 -1.98 16 21 C 0.09 1.26 7.30 -39.46 -0.29 0.98 16 22 F -0.14 -2.02 17.27 2.25 0.04 -1.98 16 23 C -0.12 -1.69 10.02 -39.47 -0.40 -2.09 16 24 C -0.08 -1.00 5.75 -104.21 -0.60 -1.60 16 25 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 27 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 28 H 0.40 3.95 8.59 -40.82 -0.35 3.60 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.53 8.04 -51.93 -0.42 0.11 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 35 H 0.14 2.34 7.88 -52.49 -0.41 1.93 16 LS Contribution 322.38 15.07 4.86 4.86 Total: -1.00 -34.35 322.38 -8.83 -43.18 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.08 Total: 1.33 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -2.95 Total: -13.66 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.46 Total: -35.14 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.35 -8.83 -43.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106680341.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.850 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds