Wall clock time and date at job start Tue Mar 31 2020 06:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86796 * 119.99637 * 2 1 4 4 H 1.48504 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47057 * 299.99667 * 3 2 1 6 6 H 1.48502 * 109.47529 * 59.99340 * 3 2 1 7 7 C 1.40046 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99861 * 180.02562 * 7 2 1 9 9 C 1.46373 * 120.00373 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99615 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00260 * 180.02562 * 9 7 2 12 12 C 1.46500 * 119.99969 * 180.02562 * 11 9 7 13 13 H 1.09003 * 109.60018 * 34.52540 * 12 11 9 14 14 C 1.52880 * 109.72954 * 274.12658 * 12 11 9 15 15 C 1.52140 * 110.80414 * 323.49545 * 14 12 11 16 16 C 1.51432 * 113.45829 * 292.44974 * 15 14 12 17 17 O 1.43137 * 110.93533 * 65.44027 * 16 15 14 18 18 C 1.36149 * 115.61575 * 273.25526 * 17 16 15 19 19 C 1.38890 * 119.77960 * 251.77693 * 18 17 16 20 20 C 1.38287 * 119.66500 * 177.77941 * 19 18 17 21 21 Cl 1.73599 * 119.89646 * 180.02562 * 20 19 18 22 22 C 1.38403 * 120.20499 * 0.09750 * 20 19 18 23 23 C 1.38373 * 120.05852 * 0.34927 * 22 20 19 24 24 C 1.37954 * 120.35921 * 70.33865 * 18 17 16 25 25 H 0.96993 * 120.00798 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99719 * 359.97438 * 11 9 7 27 27 H 1.09003 * 109.20752 * 83.83631 * 14 12 11 28 28 H 1.08999 * 109.21175 * 203.15438 * 14 12 11 29 29 H 1.09004 * 108.68682 * 171.42616 * 15 14 12 30 30 H 1.08996 * 108.68596 * 53.47762 * 15 14 12 31 31 H 1.09001 * 109.18220 * 305.07079 * 16 15 14 32 32 H 1.08994 * 109.14567 * 185.78631 * 16 15 14 33 33 H 1.08000 * 120.16514 * 357.81335 * 19 18 17 34 34 H 1.08001 * 119.97350 * 180.37585 * 22 20 19 35 35 H 1.07992 * 120.16960 * 179.86720 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3465 0.0006 5 1 1.8819 2.3964 -1.2126 6 1 1.8818 2.3966 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2753 -2.4805 0.0005 10 8 0.0583 -2.4805 -0.0004 11 7 1.9492 -3.6477 0.0016 12 6 1.2168 -4.9164 0.0010 13 1 0.3019 -4.8103 -0.5821 14 6 0.8674 -5.3113 1.4360 15 6 1.9881 -4.9268 2.3904 16 6 3.2587 -5.7236 2.1803 17 8 3.8348 -5.4395 0.9011 18 6 3.3667 -6.1888 -0.1348 19 6 4.1762 -7.1651 -0.7011 20 6 3.6824 -7.9558 -1.7224 21 17 4.6888 -9.1783 -2.4341 22 6 2.3888 -7.7747 -2.1800 23 6 1.5867 -6.7954 -1.6210 24 6 2.0831 -6.0036 -0.6051 25 1 -0.4851 0.8399 -0.0004 26 1 2.9192 -3.6476 0.0020 27 1 -0.0489 -4.8021 1.7351 28 1 0.7099 -6.3888 1.4833 29 1 1.6443 -5.0813 3.4132 30 1 2.2132 -3.8688 2.2565 31 1 3.0286 -6.7873 2.2412 32 1 3.9749 -5.4667 2.9607 33 1 5.1861 -7.3062 -0.3451 34 1 2.0049 -8.3984 -2.9737 35 1 0.5778 -6.6511 -1.9782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118941980.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:47 Heat of formation + Delta-G solvation = -60.388625 kcal Electronic energy + Delta-G solvation = -21728.976349 eV Core-core repulsion = 18331.788665 eV Total energy + Delta-G solvation = -3397.187684 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.68311 -37.85449 -37.22774 -36.36245 -34.76075 -32.50593 -31.96322 -30.76011 -30.12499 -27.25526 -26.01571 -24.45216 -22.90439 -21.20330 -20.71668 -19.05171 -17.88891 -17.40602 -16.42442 -15.80421 -15.42077 -15.15799 -15.03041 -14.42733 -14.00954 -13.88259 -13.79219 -13.31319 -13.06945 -12.84384 -12.43787 -12.10961 -11.93430 -11.75013 -11.51118 -11.08764 -11.04213 -11.02556 -10.67241 -10.45689 -10.40989 -10.26054 -10.15504 -9.88081 -8.89310 -8.84907 -8.48130 -7.59817 -7.48656 -6.17750 -4.62226 1.04653 1.14651 1.99416 3.13738 3.22414 3.27102 3.33214 3.89890 4.12985 4.58811 4.71232 4.81388 4.92178 5.00829 5.10172 5.21752 5.27200 5.36917 5.42557 5.58756 5.71665 5.77768 5.89079 6.02038 6.06967 6.17736 6.27038 6.27660 6.47470 6.60589 6.65296 6.74823 7.45426 7.50552 7.99063 8.12614 8.36908 9.04523 9.57594 10.61015 10.79862 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.022037 B = 0.004198 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.290152 B = 6668.581278 C = 6869.063954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.582 6.582 11 N -0.752 5.752 12 C 0.196 3.804 13 H 0.088 0.912 14 C -0.125 4.125 15 C -0.153 4.153 16 C 0.073 3.927 17 O -0.320 6.320 18 C 0.121 3.879 19 C -0.128 4.128 20 C -0.026 4.026 21 Cl -0.075 7.075 22 C -0.120 4.120 23 C -0.082 4.082 24 C -0.103 4.103 25 H 0.267 0.733 26 H 0.388 0.612 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.874 -15.609 0.488 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.465 6.465 11 N -0.408 5.408 12 C 0.089 3.911 13 H 0.106 0.894 14 C -0.164 4.164 15 C -0.191 4.191 16 C -0.001 4.001 17 O -0.237 6.237 18 C 0.077 3.923 19 C -0.147 4.147 20 C -0.053 4.053 21 Cl -0.046 7.046 22 C -0.139 4.139 23 C -0.101 4.101 24 C -0.105 4.105 25 H 0.078 0.922 26 H 0.222 0.778 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.028 -15.445 0.437 16.586 hybrid contribution 0.866 0.559 -0.055 1.032 sum 6.894 -14.886 0.382 16.410 Atomic orbital electron populations 1.70027 1.07004 1.27067 1.35632 1.25685 0.94583 1.00206 0.92611 0.86353 0.80610 0.81859 0.78168 1.18748 1.20202 1.20210 1.20916 0.93653 0.89315 1.54090 0.91431 1.18219 0.87179 0.82377 0.76173 1.90589 1.14058 1.86784 1.55078 1.46284 1.09108 1.03588 1.81815 1.19567 0.94246 0.82840 0.94483 0.89403 1.21739 0.99255 0.99759 0.95664 1.21620 0.94677 1.03623 0.99182 1.22551 0.95948 0.98716 0.82886 1.86290 1.63364 1.58703 1.15336 1.18263 0.91538 0.91290 0.91220 1.21107 1.01457 0.94288 0.97885 1.20640 0.92515 0.94317 0.97803 1.98358 1.69126 1.54049 1.83112 1.21057 0.92238 0.99571 1.00999 1.20967 1.00213 0.94146 0.94772 1.20863 0.94868 0.97773 0.96985 0.92249 0.77782 0.90534 0.92798 0.91505 0.89092 0.93071 0.88566 0.84383 0.84798 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.83 11.83 55.55 0.66 -22.18 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.19 29.56 -169.99 -5.02 15.17 16 4 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -15.29 9.54 -35.63 -0.34 -15.63 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.37 16 9 C 0.56 15.49 7.65 -12.99 -0.10 15.39 16 10 O -0.58 -18.25 14.68 5.20 0.08 -18.17 16 11 N -0.75 -16.71 3.27 -55.94 -0.18 -16.89 16 12 C 0.20 3.66 2.62 -68.67 -0.18 3.48 16 13 H 0.09 1.82 7.36 -51.93 -0.38 1.44 16 14 C -0.13 -2.09 5.53 -27.23 -0.15 -2.24 16 15 C -0.15 -2.35 5.34 -27.96 -0.15 -2.50 16 16 C 0.07 0.95 6.49 36.37 0.24 1.19 16 17 O -0.32 -4.91 8.37 -20.22 -0.17 -5.08 16 18 C 0.12 1.81 5.26 -39.44 -0.21 1.60 16 19 C -0.13 -1.67 9.78 -39.32 -0.38 -2.06 16 20 C -0.03 -0.32 6.32 -39.50 -0.25 -0.57 16 21 Cl -0.08 -0.82 28.95 -51.86 -1.50 -2.32 16 22 C -0.12 -1.42 9.83 -39.47 -0.39 -1.81 16 23 C -0.08 -1.10 9.69 -39.60 -0.38 -1.48 16 24 C -0.10 -1.61 4.80 -104.33 -0.50 -2.11 16 25 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 26 H 0.39 8.27 6.66 -40.82 -0.27 8.00 16 27 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 28 H 0.05 0.76 7.89 -51.93 -0.41 0.35 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.71 6.91 -51.93 -0.36 1.35 16 31 H 0.05 0.59 7.90 -51.93 -0.41 0.18 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.14 1.64 7.98 -52.49 -0.42 1.22 16 LS Contribution 307.71 15.07 4.64 4.64 Total: -1.00 -32.59 307.71 -8.31 -40.90 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -3.91 Total: 8.30 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -2.89 Total: -4.37 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.47 Total: -39.06 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.09 Total: -23.25 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.59 -8.31 -40.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118941980.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.487 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds