Wall clock time and date at job start Tue Mar 31 2020 06:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86796 * 119.99637 * 2 1 4 4 H 1.48504 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47057 * 299.99667 * 3 2 1 6 6 H 1.48502 * 109.47529 * 59.99340 * 3 2 1 7 7 C 1.40046 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99861 * 180.02562 * 7 2 1 9 9 C 1.46373 * 120.00373 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99615 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00260 * 180.02562 * 9 7 2 12 12 C 1.46500 * 119.99969 * 180.02562 * 11 9 7 13 13 H 1.09003 * 109.60018 * 34.52540 * 12 11 9 14 14 C 1.52880 * 109.72954 * 274.12658 * 12 11 9 15 15 C 1.52140 * 110.80414 * 323.49545 * 14 12 11 16 16 C 1.51432 * 113.45829 * 292.44974 * 15 14 12 17 17 O 1.43137 * 110.93533 * 65.44027 * 16 15 14 18 18 C 1.36149 * 115.61575 * 273.25526 * 17 16 15 19 19 C 1.38890 * 119.77960 * 251.77693 * 18 17 16 20 20 C 1.38287 * 119.66500 * 177.77941 * 19 18 17 21 21 Cl 1.73599 * 119.89646 * 180.02562 * 20 19 18 22 22 C 1.38403 * 120.20499 * 0.09750 * 20 19 18 23 23 C 1.38373 * 120.05852 * 0.34927 * 22 20 19 24 24 C 1.37954 * 120.35921 * 70.33865 * 18 17 16 25 25 H 0.96993 * 120.00798 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99719 * 359.97438 * 11 9 7 27 27 H 1.09003 * 109.20752 * 83.83631 * 14 12 11 28 28 H 1.08999 * 109.21175 * 203.15438 * 14 12 11 29 29 H 1.09004 * 108.68682 * 171.42616 * 15 14 12 30 30 H 1.08996 * 108.68596 * 53.47762 * 15 14 12 31 31 H 1.09001 * 109.18220 * 305.07079 * 16 15 14 32 32 H 1.08994 * 109.14567 * 185.78631 * 16 15 14 33 33 H 1.08000 * 120.16514 * 357.81335 * 19 18 17 34 34 H 1.08001 * 119.97350 * 180.37585 * 22 20 19 35 35 H 1.07992 * 120.16960 * 179.86720 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3465 0.0006 5 1 1.8819 2.3964 -1.2126 6 1 1.8818 2.3966 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2753 -2.4805 0.0005 10 8 0.0583 -2.4805 -0.0004 11 7 1.9492 -3.6477 0.0016 12 6 1.2168 -4.9164 0.0010 13 1 0.3019 -4.8103 -0.5821 14 6 0.8674 -5.3113 1.4360 15 6 1.9881 -4.9268 2.3904 16 6 3.2587 -5.7236 2.1803 17 8 3.8348 -5.4395 0.9011 18 6 3.3667 -6.1888 -0.1348 19 6 4.1762 -7.1651 -0.7011 20 6 3.6824 -7.9558 -1.7224 21 17 4.6888 -9.1783 -2.4341 22 6 2.3888 -7.7747 -2.1800 23 6 1.5867 -6.7954 -1.6210 24 6 2.0831 -6.0036 -0.6051 25 1 -0.4851 0.8399 -0.0004 26 1 2.9192 -3.6476 0.0020 27 1 -0.0489 -4.8021 1.7351 28 1 0.7099 -6.3888 1.4833 29 1 1.6443 -5.0813 3.4132 30 1 2.2132 -3.8688 2.2565 31 1 3.0286 -6.7873 2.2412 32 1 3.9749 -5.4667 2.9607 33 1 5.1861 -7.3062 -0.3451 34 1 2.0049 -8.3984 -2.9737 35 1 0.5778 -6.6511 -1.9782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118941980.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:47 Heat of formation + Delta-G solvation = -80.970012 kcal Electronic energy + Delta-G solvation = -21729.868825 eV Core-core repulsion = 18331.788665 eV Total energy + Delta-G solvation = -3398.080160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.87734 -39.33229 -38.69396 -37.33850 -36.38007 -34.58637 -33.45178 -32.08038 -31.36353 -28.78390 -27.78092 -25.75799 -24.01161 -22.45776 -22.27636 -20.67715 -19.38611 -18.94448 -17.76797 -17.32948 -16.92337 -16.49650 -16.17218 -15.89480 -15.78823 -15.19390 -15.02373 -14.56478 -14.37905 -14.29824 -13.95022 -13.70029 -13.30534 -13.15597 -12.81790 -12.71600 -12.65372 -12.55320 -11.99699 -11.97810 -11.89963 -11.67016 -11.57272 -11.04270 -10.93734 -9.95448 -9.82835 -9.53044 -9.40588 -8.27939 -6.83660 -0.02598 0.11798 1.03768 1.39041 1.39575 1.57053 2.23835 2.29552 2.49453 2.79015 3.22513 3.53968 3.66208 3.76849 3.93500 4.00659 4.02263 4.08926 4.26182 4.39094 4.46824 4.58875 4.69865 4.72831 4.93517 4.99436 5.03657 5.11394 5.21740 5.32693 5.36857 5.41733 5.51788 5.91425 6.24940 6.32352 6.42441 6.88649 7.58145 8.51804 8.69468 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.022037 B = 0.004198 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.290152 B = 6668.581278 C = 6869.063954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.033 3.967 3 Si 0.993 3.007 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.545 3.455 10 O -0.629 6.629 11 N -0.738 5.738 12 C 0.193 3.807 13 H 0.057 0.943 14 C -0.121 4.121 15 C -0.149 4.149 16 C 0.074 3.926 17 O -0.337 6.337 18 C 0.112 3.888 19 C -0.126 4.126 20 C -0.023 4.023 21 Cl -0.057 7.057 22 C -0.111 4.111 23 C -0.085 4.085 24 C -0.122 4.122 25 H 0.274 0.726 26 H 0.393 0.607 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.155 -16.873 0.325 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.182 4.182 3 Si 0.813 3.187 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.610 4.610 8 H 0.097 0.903 9 C 0.349 3.651 10 O -0.516 6.516 11 N -0.393 5.393 12 C 0.087 3.913 13 H 0.075 0.925 14 C -0.160 4.160 15 C -0.187 4.187 16 C 0.001 3.999 17 O -0.254 6.254 18 C 0.068 3.932 19 C -0.145 4.145 20 C -0.050 4.050 21 Cl -0.028 7.028 22 C -0.130 4.130 23 C -0.103 4.103 24 C -0.124 4.124 25 H 0.084 0.916 26 H 0.228 0.772 27 H 0.062 0.938 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.139 0.861 33 H 0.172 0.828 34 H 0.179 0.821 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.346 -16.765 0.275 18.730 hybrid contribution 0.161 0.801 -0.043 0.818 sum 8.508 -15.964 0.232 18.091 Atomic orbital electron populations 1.70179 1.09328 1.28743 1.36687 1.26876 0.95485 1.04635 0.91243 0.85036 0.79293 0.75751 0.78615 1.17378 1.19310 1.19171 1.21404 0.94410 0.90355 1.54808 0.90293 1.18477 0.86769 0.84084 0.75812 1.90541 1.15929 1.87858 1.57253 1.45928 1.09192 1.03802 1.80344 1.19604 0.93464 0.82438 0.95776 0.92451 1.21666 0.98481 1.01160 0.94691 1.21593 0.95624 1.01495 0.99983 1.22686 0.95085 0.99504 0.82664 1.86269 1.63546 1.59381 1.16157 1.18361 0.91393 0.91944 0.91507 1.21223 1.01831 0.93657 0.97771 1.20778 0.92813 0.94202 0.97225 1.98372 1.68606 1.53140 1.82712 1.21297 0.91827 0.98885 1.00942 1.21108 1.00937 0.94147 0.94141 1.20590 0.95155 0.97917 0.98695 0.91638 0.77153 0.93818 0.89731 0.89301 0.93178 0.90781 0.86059 0.82803 0.82117 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.44 11.83 21.84 0.26 -50.18 16 2 C 0.03 1.85 5.50 85.30 0.47 2.32 16 3 Si 0.99 41.74 29.56 68.60 2.03 43.77 16 4 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 6 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.57 -33.24 9.54 24.83 0.24 -33.01 16 8 H 0.08 4.23 7.85 -2.91 -0.02 4.21 16 9 C 0.54 31.87 7.65 86.36 0.66 32.53 16 10 O -0.63 -41.87 14.68 -4.32 -0.06 -41.93 16 11 N -0.74 -34.25 3.27 -449.12 -1.47 -35.72 16 12 C 0.19 7.54 2.62 44.51 0.12 7.66 16 13 H 0.06 2.56 7.36 -2.39 -0.02 2.54 16 14 C -0.12 -4.16 5.53 30.27 0.17 -4.00 16 15 C -0.15 -4.57 5.34 29.80 0.16 -4.41 16 16 C 0.07 1.80 6.49 71.47 0.46 2.26 16 17 O -0.34 -9.91 8.37 -95.25 -0.80 -10.70 16 18 C 0.11 3.18 5.26 22.36 0.12 3.30 16 19 C -0.13 -2.97 9.78 22.44 0.22 -2.75 16 20 C -0.02 -0.50 6.32 22.32 0.14 -0.36 16 21 Cl -0.06 -1.06 28.95 -2.72 -0.08 -1.14 16 22 C -0.11 -2.34 9.83 22.34 0.22 -2.12 16 23 C -0.08 -2.16 9.69 22.26 0.22 -1.95 16 24 C -0.12 -3.77 4.80 -19.67 -0.09 -3.86 16 25 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 26 H 0.39 17.27 6.66 -92.71 -0.62 16.65 16 27 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 2.35 7.89 -2.39 -0.02 2.33 16 29 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 30 H 0.05 1.95 6.91 -2.39 -0.02 1.93 16 31 H 0.07 1.48 7.90 -2.39 -0.02 1.46 16 32 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 34 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.15 3.42 7.98 -2.91 -0.02 3.39 16 Total: -1.00 -74.26 307.71 3.48 -70.78 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.51 Total: 29.50 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 3.09 Total: -4.38 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -1.21 Total: -85.90 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -0.86 Total: -52.63 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -74.26 3.48 -70.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118941980.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.193 kcal (2) G-P(sol) polarization free energy of solvation -74.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds