Wall clock time and date at job start Tue Mar 31 2020 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34227 * 116.99539 * 2 1 4 4 O 1.20824 * 120.00397 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99790 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47194 * 180.02562 * 5 3 2 7 7 C 1.36768 * 120.00218 * 269.99940 * 6 5 3 8 8 H 1.07997 * 120.00378 * 203.75367 * 7 6 5 9 9 C 1.39057 * 119.99847 * 23.74184 * 7 6 5 10 10 N 1.31365 * 119.99862 * 351.41215 * 9 7 6 11 11 Si 1.86803 * 119.99805 * 171.40791 * 9 7 6 12 12 H 1.48494 * 109.47286 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47045 * 120.00598 * 11 9 7 14 14 H 1.48502 * 109.46720 * 240.00118 * 11 9 7 15 15 C 1.34782 * 120.00127 * 89.99573 * 6 5 3 16 16 O 1.21841 * 119.99927 * 354.93718 * 15 6 5 17 17 C 1.41275 * 119.99843 * 175.20817 * 15 6 5 18 18 C 1.35810 * 119.99907 * 185.03994 * 17 15 6 19 19 C 1.41505 * 119.99983 * 185.15519 * 18 17 15 20 20 C 1.37112 * 125.47849 * 184.89155 * 19 18 17 21 21 C 1.37412 * 113.21250 * 179.86862 * 20 19 18 22 22 C 1.33879 * 115.13329 * 0.42279 * 21 20 19 23 23 S 1.70602 * 111.02289 * 359.76342 * 22 21 20 24 24 H 1.08994 * 109.46870 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47044 * 300.00173 * 1 2 3 26 26 H 1.09005 * 109.46951 * 60.00400 * 1 2 3 27 27 H 1.08993 * 109.47519 * 59.99856 * 5 3 2 28 28 H 1.09000 * 109.47124 * 299.99539 * 5 3 2 29 29 H 0.96998 * 120.00099 * 185.00849 * 10 9 7 30 30 H 1.08006 * 120.00059 * 5.04462 * 17 15 6 31 31 H 1.07994 * 119.99861 * 5.16574 * 18 17 15 32 32 H 1.08004 * 123.39382 * 359.97438 * 20 19 18 33 33 H 1.08002 * 122.43736 * 180.18924 * 21 20 19 34 34 H 1.08005 * 124.48979 * 179.75123 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.1750 3.3364 -1.1839 8 1 4.8230 4.1995 -1.2233 9 6 3.5375 2.8925 -2.3373 10 7 2.8873 1.7511 -2.3304 11 14 3.6056 3.9194 -3.8962 12 1 4.3948 5.1516 -3.6433 13 1 4.2495 3.1333 -4.9790 14 1 2.2270 4.2894 -4.3058 15 6 4.1731 3.3254 1.1677 16 8 3.9125 2.7703 2.2206 17 6 4.6706 4.6476 1.1705 18 6 4.9603 5.2617 2.3466 19 6 5.3543 6.6208 2.3570 20 6 5.7621 7.3227 3.4619 21 6 6.0900 8.6279 3.1839 22 6 5.9489 8.9890 1.9025 23 16 5.3922 7.6830 0.9563 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 3.9558 0.7811 -0.8907 28 1 3.9564 0.7808 0.8892 29 1 2.5045 1.4060 -3.1522 30 1 4.8204 5.1702 0.2372 31 1 4.8902 4.7127 3.2740 32 1 5.8215 6.8926 4.4509 33 1 6.4328 9.3137 3.9445 34 1 6.1594 9.9763 1.5185 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120673847.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:56 Heat of formation + Delta-G solvation = -50.114379 kcal Electronic energy + Delta-G solvation = -21165.726104 eV Core-core repulsion = 17771.027651 eV Total energy + Delta-G solvation = -3394.698453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.54509 -38.51798 -37.67405 -35.56635 -34.64004 -33.37246 -31.68710 -29.26785 -27.98914 -26.33499 -25.18286 -24.10752 -21.77529 -20.00511 -19.48820 -19.11817 -17.24928 -16.83824 -16.55307 -16.00400 -15.48875 -15.37110 -15.10334 -14.41321 -14.36320 -13.61922 -13.21139 -13.08426 -12.85763 -12.54156 -12.38933 -12.29954 -12.11461 -11.66056 -11.52070 -11.35909 -11.23969 -10.84972 -10.66463 -10.51407 -10.34141 -9.97546 -9.81938 -9.56778 -9.06937 -8.72343 -8.40082 -8.07596 -7.59938 -6.59249 -4.13303 0.56805 1.79110 2.19503 2.23594 3.01164 3.10432 3.15798 3.16147 3.65721 3.73009 4.00728 4.38898 4.69048 4.98633 5.14760 5.32035 5.60308 5.70637 5.71516 5.78943 5.79080 5.95836 6.03265 6.19313 6.32805 6.44373 6.48595 6.52527 6.76633 6.89342 7.04305 7.20595 7.44852 7.57489 8.13161 8.84269 9.13337 9.24888 9.68338 10.42005 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.004962 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.934475 B = 5641.994093 C = 6875.496712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.492 3.508 4 O -0.512 6.512 5 C 0.153 3.847 6 N -0.415 5.415 7 C -0.321 4.321 8 H 0.107 0.893 9 C 0.042 3.958 10 N -0.875 5.875 11 Si 0.934 3.066 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.278 1.278 15 C 0.486 3.514 16 O -0.608 6.608 17 C -0.142 4.142 18 C -0.059 4.059 19 C -0.150 4.150 20 C -0.139 4.139 21 C -0.135 4.135 22 C -0.272 4.272 23 S 0.186 5.814 24 H 0.085 0.915 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.138 0.862 28 H 0.079 0.921 29 H 0.276 0.724 30 H 0.125 0.875 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.133 0.867 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 5.678 2.796 7.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.334 3.666 4 O -0.397 6.397 5 C 0.028 3.972 6 N -0.131 5.131 7 C -0.449 4.449 8 H 0.125 0.875 9 C -0.163 4.163 10 N -0.514 5.514 11 Si 0.760 3.240 12 H -0.189 1.189 13 H -0.204 1.204 14 H -0.203 1.203 15 C 0.280 3.720 16 O -0.497 6.497 17 C -0.165 4.165 18 C -0.082 4.082 19 C -0.268 4.268 20 C -0.170 4.170 21 C -0.167 4.167 22 C -0.409 4.409 23 S 0.454 5.546 24 H 0.104 0.896 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.155 0.845 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.151 0.849 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.821 5.476 1.586 6.361 hybrid contribution -0.020 0.845 0.463 0.964 sum 2.801 6.321 2.048 7.211 Atomic orbital electron populations 1.22920 0.78892 1.01759 1.01514 1.86459 1.21482 1.35461 1.85677 1.23823 0.92188 0.80470 0.70100 1.90511 1.66619 1.36455 1.46150 1.20700 0.87325 0.85211 1.04005 1.43407 1.55540 1.08525 1.05629 1.19820 1.26748 1.12963 0.85359 0.87524 1.25391 0.94036 0.96367 1.00457 1.69577 1.34555 1.18341 1.28906 0.85735 0.78447 0.79750 0.80033 1.18883 1.20402 1.20348 1.16742 0.84491 0.86916 0.83864 1.90699 1.58580 1.69210 1.31258 1.22304 0.99583 0.96717 0.97924 1.20488 0.97989 0.90252 0.99470 1.22764 1.08771 0.98510 0.96764 1.20811 1.03263 0.93936 0.98942 1.19889 1.04034 0.96520 0.96218 1.25122 1.11903 1.04874 0.99030 1.83346 1.60883 0.99769 1.10618 0.89609 0.93189 0.92811 0.84499 0.90339 0.91267 0.85760 0.84326 0.83956 0.84910 0.82414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.84 16 2 O -0.37 -8.18 10.57 -39.25 -0.41 -8.59 16 3 C 0.49 12.37 5.88 36.01 0.21 12.58 16 4 O -0.51 -14.40 15.88 -18.75 -0.30 -14.70 16 5 C 0.15 3.70 5.21 -5.19 -0.03 3.67 16 6 N -0.41 -10.47 2.10 -119.46 -0.25 -10.72 16 7 C -0.32 -7.92 9.03 -15.05 -0.14 -8.05 16 8 H 0.11 2.44 5.99 -52.49 -0.31 2.13 16 9 C 0.04 1.02 5.41 -17.45 -0.09 0.93 16 10 N -0.87 -21.93 8.16 55.50 0.45 -21.48 16 11 Si 0.93 19.13 29.57 -169.99 -5.03 14.10 16 12 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 13 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 14 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 15 C 0.49 12.09 7.38 -15.10 -0.11 11.98 16 16 O -0.61 -16.34 15.76 5.06 0.08 -16.26 16 17 C -0.14 -3.00 8.62 -39.30 -0.34 -3.34 16 18 C -0.06 -1.09 9.35 -39.21 -0.37 -1.46 16 19 C -0.15 -2.41 6.20 -38.75 -0.24 -2.65 16 20 C -0.14 -1.92 10.25 -40.29 -0.41 -2.34 16 21 C -0.14 -1.66 10.14 -41.41 -0.42 -2.08 16 22 C -0.27 -3.35 10.92 29.20 0.32 -3.03 16 23 S 0.19 2.68 21.80 -107.50 -2.34 0.34 16 24 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 26 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 27 H 0.14 3.26 6.35 -51.93 -0.33 2.94 16 28 H 0.08 1.79 7.49 -51.93 -0.39 1.41 16 29 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.12 2.50 5.13 -52.48 -0.27 2.24 16 31 H 0.14 2.59 7.49 -52.49 -0.39 2.20 16 32 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.16 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 313.47 15.07 4.72 4.72 Total: -1.00 -30.84 313.47 -6.99 -37.84 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -3.37 Total: 6.69 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -0.55 Total: 8.06 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.20 Total: -32.20 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -0.63 Total: -39.55 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -2.34 Total: 0.34 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.84 -6.99 -37.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120673847.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.277 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds