Wall clock time and date at job start Tue Mar 31 2020 07:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31386 * 1 3 3 Si 1.86801 * 119.99765 * 2 1 4 4 H 1.48507 * 109.47126 * 270.00015 * 3 2 1 5 5 H 1.48499 * 109.47242 * 29.99752 * 3 2 1 6 6 H 1.48500 * 109.47214 * 150.00283 * 3 2 1 7 7 C 1.39014 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00408 * 359.97438 * 7 2 1 9 9 N 1.36909 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.34782 * 120.00142 * 180.27628 * 9 7 2 11 11 O 1.21629 * 119.99862 * 359.71585 * 10 9 7 12 12 C 1.47424 * 119.99827 * 179.72501 * 10 9 7 13 13 C 1.39833 * 120.10585 * 359.72178 * 12 10 9 14 14 C 1.37638 * 119.91545 * 179.72087 * 13 12 10 15 15 C 1.39077 * 120.12790 * 0.55617 * 14 13 12 16 16 O 1.35718 * 119.89085 * 179.69880 * 15 14 13 17 17 C 1.42901 * 116.99855 * 186.00140 * 16 15 14 18 18 C 1.53777 * 113.61634 * 255.44800 * 17 16 15 19 19 C 1.53780 * 87.07947 * 220.01749 * 18 17 16 20 20 C 1.53776 * 113.61332 * 157.94456 * 17 16 15 21 21 C 1.38913 * 120.21129 * 359.71502 * 15 14 13 22 22 C 1.37880 * 120.08354 * 0.02562 * 21 15 14 23 23 Cl 1.73598 * 120.06514 * 179.97438 * 22 21 15 24 24 H 0.96999 * 120.00185 * 0.02562 * 1 2 3 25 25 H 0.97003 * 119.99991 * 359.97438 * 9 7 2 26 26 H 1.08000 * 120.04670 * 359.97438 * 13 12 10 27 27 H 1.08000 * 119.93815 * 180.27585 * 14 13 12 28 28 H 1.09010 * 112.84669 * 26.75391 * 17 16 15 29 29 H 1.08998 * 113.61125 * 334.56601 * 18 17 16 30 30 H 1.09003 * 113.61565 * 105.47209 * 18 17 16 31 31 H 1.08997 * 113.61801 * 270.88135 * 19 18 17 32 32 H 1.09004 * 113.61747 * 139.97944 * 19 18 17 33 33 H 1.08999 * 113.61797 * 254.52850 * 20 17 16 34 34 H 1.08996 * 113.61327 * 25.35749 * 20 17 16 35 35 H 1.07998 * 119.95815 * 180.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 2.4953 2.0465 -1.4001 5 1 1.4452 2.6527 0.7000 6 1 3.5454 1.4403 0.7000 7 6 2.0090 -1.2039 -0.0005 8 1 1.4691 -2.1392 -0.0005 9 7 3.3781 -1.2038 0.0000 10 6 4.0520 -2.3710 -0.0062 11 8 3.4439 -3.4244 -0.0070 12 6 5.5263 -2.3709 -0.0117 13 6 6.2275 -1.1611 -0.0165 14 6 7.6039 -1.1655 -0.0159 15 6 8.2981 -2.3706 -0.0222 16 8 9.6553 -2.3693 -0.0277 17 6 10.3047 -3.6346 -0.1671 18 6 10.9056 -4.1665 1.1447 19 6 12.1078 -4.6392 0.3103 20 6 11.7456 -3.5326 -0.6943 21 6 7.6068 -3.5755 -0.0231 22 6 6.2281 -3.5813 -0.0184 23 17 5.3647 -5.0873 -0.0203 24 1 -0.4850 0.8400 -0.0004 25 1 3.8630 -0.3637 0.0004 26 1 5.6899 -0.2244 -0.0165 27 1 8.1459 -0.2313 -0.0150 28 1 9.6961 -4.3664 -0.6985 29 1 11.1524 -3.3829 1.8611 30 1 10.3340 -4.9819 1.5878 31 1 11.9927 -5.6467 -0.0895 32 1 13.0683 -4.4852 0.8022 33 1 11.8522 -3.8365 -1.7356 34 1 12.2216 -2.5754 -0.4818 35 1 8.1501 -4.5089 -0.0276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123099924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:47 Heat of formation + Delta-G solvation = -19.379496 kcal Electronic energy + Delta-G solvation = -20704.464094 eV Core-core repulsion = 17309.054700 eV Total energy + Delta-G solvation = -3395.409395 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.59330 -39.12418 -37.74180 -36.38652 -35.64808 -34.06100 -31.87565 -30.73428 -29.94576 -26.08324 -25.87290 -25.11121 -22.68988 -22.48834 -20.02213 -19.53652 -18.96058 -18.42417 -16.83247 -15.96952 -15.81328 -15.25857 -15.07138 -14.79303 -14.52880 -13.88199 -13.80225 -13.72232 -13.01983 -12.84964 -12.80750 -12.54215 -12.43407 -12.02993 -11.91325 -11.68536 -11.26515 -11.13572 -11.00180 -10.72852 -10.65937 -10.52920 -10.38317 -10.03586 -9.64185 -8.79359 -8.32979 -8.26388 -8.07591 -6.42473 -3.85698 1.10461 1.25763 2.51729 2.97268 3.01697 3.04544 3.10272 3.38304 4.01804 4.15013 4.16562 4.30723 4.42021 4.43426 4.51567 4.74740 4.90464 5.05035 5.24563 5.28964 5.30606 5.36616 5.46867 5.51331 5.55010 5.58108 5.64881 5.74560 5.91762 6.13384 6.33523 6.38148 6.59796 7.30153 7.47539 8.07354 8.51183 8.86622 9.32572 9.78996 10.69573 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024443 B = 0.003965 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.262786 B = 7060.912570 C = 8087.118510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.042 3.958 3 Si 0.877 3.123 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.295 4.295 8 H 0.125 0.875 9 N -0.573 5.573 10 C 0.477 3.523 11 O -0.557 6.557 12 C -0.129 4.129 13 C -0.058 4.058 14 C -0.152 4.152 15 C 0.140 3.860 16 O -0.298 6.298 17 C 0.051 3.949 18 C -0.157 4.157 19 C -0.141 4.141 20 C -0.131 4.131 21 C -0.210 4.210 22 C 0.041 3.959 23 Cl -0.031 7.031 24 H 0.276 0.724 25 H 0.370 0.630 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.532 -3.778 -0.106 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.163 4.163 3 Si 0.702 3.298 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.424 4.424 8 H 0.142 0.858 9 N -0.211 5.211 10 C 0.265 3.735 11 O -0.440 6.440 12 C -0.134 4.134 13 C -0.078 4.078 14 C -0.171 4.171 15 C 0.094 3.906 16 O -0.212 6.212 17 C -0.006 4.006 18 C -0.195 4.195 19 C -0.178 4.178 20 C -0.168 4.168 21 C -0.229 4.229 22 C 0.013 3.987 23 Cl -0.001 7.001 24 H 0.087 0.913 25 H 0.204 0.796 26 H 0.153 0.847 27 H 0.154 0.846 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 22.915 -4.339 -0.088 23.322 hybrid contribution 0.417 1.118 0.019 1.193 sum 23.332 -3.221 -0.069 23.553 Atomic orbital electron populations 1.69605 1.05732 1.27884 1.47574 1.25099 0.95554 0.98162 0.97453 0.86707 0.79977 0.83871 0.79204 1.19237 1.19812 1.19296 1.19530 0.79169 0.96890 1.46763 0.85792 1.42201 1.07572 1.06213 1.65138 1.17330 0.85309 0.84878 0.85984 1.90740 1.68721 1.29956 1.54588 1.20117 0.95834 0.91826 1.05600 1.21118 0.93129 0.97325 0.96227 1.20352 0.93411 0.96334 1.06970 1.18898 0.82393 0.93386 0.95907 1.86117 1.15911 1.32042 1.87095 1.24257 0.92995 0.85062 0.98259 1.23519 0.97398 1.01381 0.97175 1.22659 0.98744 0.98629 0.97770 1.23180 0.93594 1.00198 0.99827 1.20971 0.92885 0.97996 1.11066 1.20634 0.91006 0.88211 0.98891 1.98398 1.76874 1.28880 1.95968 0.91304 0.79641 0.84671 0.84607 0.88051 0.88869 0.90684 0.89657 0.90379 0.90481 0.88825 0.84465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.88 13.96 55.50 0.77 -24.11 16 2 C 0.04 1.13 5.50 -17.45 -0.10 1.03 16 3 Si 0.88 18.94 27.74 -169.99 -4.71 14.23 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 7 C -0.29 -8.27 10.16 -15.00 -0.15 -8.42 16 8 H 0.12 3.95 7.38 -52.49 -0.39 3.56 16 9 N -0.57 -13.90 5.03 -11.96 -0.06 -13.96 16 10 C 0.48 11.41 7.70 -12.52 -0.10 11.32 16 11 O -0.56 -15.09 13.53 5.25 0.07 -15.02 16 12 C -0.13 -2.50 5.88 -104.93 -0.62 -3.11 16 13 C -0.06 -0.93 9.53 -39.20 -0.37 -1.30 16 14 C -0.15 -2.09 9.97 -39.49 -0.39 -2.48 16 15 C 0.14 1.92 6.69 -39.02 -0.26 1.66 16 16 O -0.30 -3.58 10.14 -18.86 -0.19 -3.77 16 17 C 0.05 0.46 3.62 -25.92 -0.09 0.37 16 18 C -0.16 -1.23 7.91 -25.92 -0.21 -1.43 16 19 C -0.14 -0.85 8.08 -25.92 -0.21 -1.06 16 20 C -0.13 -0.92 7.91 -25.92 -0.21 -1.13 16 21 C -0.21 -3.00 8.77 -39.46 -0.35 -3.35 16 22 C 0.04 0.73 6.35 -39.08 -0.25 0.48 16 23 Cl -0.03 -0.57 26.01 -51.86 -1.35 -1.92 16 24 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.37 7.85 3.78 -40.82 -0.15 7.69 16 26 H 0.14 1.97 6.39 -52.49 -0.34 1.64 16 27 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.10 0.89 6.03 -51.92 -0.31 0.58 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.14 1.63 5.93 -52.49 -0.31 1.32 16 LS Contribution 309.94 15.07 4.67 4.67 Total: -1.00 -31.57 309.94 -7.73 -39.30 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.63 Total: 8.01 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -3.30 Total: -7.43 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.71 Total: -38.07 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.12 Total: -18.79 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.71 Total: 14.23 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.35 Total: -1.92 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.57 -7.73 -39.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123099924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.918 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds