Wall clock time and date at job start Tue Mar 31 2020 07:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31386 * 1 3 3 Si 1.86801 * 119.99765 * 2 1 4 4 H 1.48507 * 109.47126 * 270.00015 * 3 2 1 5 5 H 1.48499 * 109.47242 * 29.99752 * 3 2 1 6 6 H 1.48500 * 109.47214 * 150.00283 * 3 2 1 7 7 C 1.39014 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00408 * 359.97438 * 7 2 1 9 9 N 1.36909 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.34782 * 120.00142 * 180.27628 * 9 7 2 11 11 O 1.21629 * 119.99862 * 359.71585 * 10 9 7 12 12 C 1.47424 * 119.99827 * 179.72501 * 10 9 7 13 13 C 1.39833 * 120.10585 * 359.72178 * 12 10 9 14 14 C 1.37638 * 119.91545 * 179.72087 * 13 12 10 15 15 C 1.39077 * 120.12790 * 0.55617 * 14 13 12 16 16 O 1.35718 * 119.89085 * 179.69880 * 15 14 13 17 17 C 1.42901 * 116.99855 * 186.00140 * 16 15 14 18 18 C 1.53777 * 113.61634 * 255.44800 * 17 16 15 19 19 C 1.53780 * 87.07947 * 220.01749 * 18 17 16 20 20 C 1.53776 * 113.61332 * 157.94456 * 17 16 15 21 21 C 1.38913 * 120.21129 * 359.71502 * 15 14 13 22 22 C 1.37880 * 120.08354 * 0.02562 * 21 15 14 23 23 Cl 1.73598 * 120.06514 * 179.97438 * 22 21 15 24 24 H 0.96999 * 120.00185 * 0.02562 * 1 2 3 25 25 H 0.97003 * 119.99991 * 359.97438 * 9 7 2 26 26 H 1.08000 * 120.04670 * 359.97438 * 13 12 10 27 27 H 1.08000 * 119.93815 * 180.27585 * 14 13 12 28 28 H 1.09010 * 112.84669 * 26.75391 * 17 16 15 29 29 H 1.08998 * 113.61125 * 334.56601 * 18 17 16 30 30 H 1.09003 * 113.61565 * 105.47209 * 18 17 16 31 31 H 1.08997 * 113.61801 * 270.88135 * 19 18 17 32 32 H 1.09004 * 113.61747 * 139.97944 * 19 18 17 33 33 H 1.08999 * 113.61797 * 254.52850 * 20 17 16 34 34 H 1.08996 * 113.61327 * 25.35749 * 20 17 16 35 35 H 1.07998 * 119.95815 * 180.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 2.4953 2.0465 -1.4001 5 1 1.4452 2.6527 0.7000 6 1 3.5454 1.4403 0.7000 7 6 2.0090 -1.2039 -0.0005 8 1 1.4691 -2.1392 -0.0005 9 7 3.3781 -1.2038 0.0000 10 6 4.0520 -2.3710 -0.0062 11 8 3.4439 -3.4244 -0.0070 12 6 5.5263 -2.3709 -0.0117 13 6 6.2275 -1.1611 -0.0165 14 6 7.6039 -1.1655 -0.0159 15 6 8.2981 -2.3706 -0.0222 16 8 9.6553 -2.3693 -0.0277 17 6 10.3047 -3.6346 -0.1671 18 6 10.9056 -4.1665 1.1447 19 6 12.1078 -4.6392 0.3103 20 6 11.7456 -3.5326 -0.6943 21 6 7.6068 -3.5755 -0.0231 22 6 6.2281 -3.5813 -0.0184 23 17 5.3647 -5.0873 -0.0203 24 1 -0.4850 0.8400 -0.0004 25 1 3.8630 -0.3637 0.0004 26 1 5.6899 -0.2244 -0.0165 27 1 8.1459 -0.2313 -0.0150 28 1 9.6961 -4.3664 -0.6985 29 1 11.1524 -3.3829 1.8611 30 1 10.3340 -4.9819 1.5878 31 1 11.9927 -5.6467 -0.0895 32 1 13.0683 -4.4852 0.8022 33 1 11.8522 -3.8365 -1.7356 34 1 12.2216 -2.5754 -0.4818 35 1 8.1501 -4.5089 -0.0276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123099924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:46 Heat of formation + Delta-G solvation = -39.643004 kcal Electronic energy + Delta-G solvation = -20705.342786 eV Core-core repulsion = 17309.054700 eV Total energy + Delta-G solvation = -3396.288086 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.62793 -40.53203 -39.02048 -37.61664 -36.85583 -36.05791 -33.85563 -31.99752 -31.28744 -27.23380 -26.61966 -26.46404 -24.02355 -23.65758 -21.45625 -20.70162 -20.52268 -19.57880 -18.29215 -17.21875 -16.94535 -16.63848 -16.16284 -16.03336 -15.74881 -15.50563 -15.26414 -15.02188 -14.60853 -14.32537 -13.99545 -13.64687 -13.53834 -13.39412 -12.99168 -12.79389 -12.45837 -12.36926 -12.15245 -12.05287 -11.96389 -11.89925 -11.54536 -11.35181 -11.17477 -10.28366 -10.21879 -10.01968 -9.32592 -8.45399 -6.02126 -0.21559 0.05951 1.16046 1.28056 1.35606 1.42831 1.93330 2.12396 2.20548 2.65760 2.80308 3.23192 3.50899 3.57386 3.63061 3.79052 3.88774 3.89836 3.97331 4.08497 4.35740 4.43173 4.50452 4.79316 4.81409 4.94103 4.99178 5.02147 5.07202 5.11342 5.14153 5.34203 5.46751 5.54009 5.91774 6.30707 6.53391 6.82521 7.32132 7.89424 8.71560 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024443 B = 0.003965 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.262786 B = 7060.912570 C = 8087.118510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.011 4.011 3 Si 0.955 3.045 4 H -0.252 1.252 5 H -0.270 1.270 6 H -0.230 1.230 7 C -0.325 4.325 8 H 0.061 0.939 9 N -0.576 5.576 10 C 0.481 3.519 11 O -0.598 6.598 12 C -0.167 4.167 13 C -0.047 4.047 14 C -0.144 4.144 15 C 0.161 3.839 16 O -0.297 6.297 17 C 0.031 3.969 18 C -0.160 4.160 19 C -0.131 4.131 20 C -0.126 4.126 21 C -0.205 4.205 22 C 0.032 3.968 23 Cl -0.051 7.051 24 H 0.282 0.718 25 H 0.387 0.613 26 H 0.152 0.848 27 H 0.172 0.828 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.361 -1.907 -0.157 28.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.211 4.211 3 Si 0.774 3.226 4 H -0.176 1.176 5 H -0.194 1.194 6 H -0.153 1.153 7 C -0.454 4.454 8 H 0.079 0.921 9 N -0.216 5.216 10 C 0.270 3.730 11 O -0.483 6.483 12 C -0.171 4.171 13 C -0.066 4.066 14 C -0.162 4.162 15 C 0.114 3.886 16 O -0.209 6.209 17 C -0.024 4.024 18 C -0.197 4.197 19 C -0.168 4.168 20 C -0.163 4.163 21 C -0.224 4.224 22 C 0.004 3.996 23 Cl -0.021 7.021 24 H 0.091 0.909 25 H 0.224 0.776 26 H 0.169 0.831 27 H 0.190 0.810 28 H 0.124 0.876 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 27.795 -2.484 -0.138 27.906 hybrid contribution -0.817 0.341 0.032 0.886 sum 26.978 -2.143 -0.107 27.063 Atomic orbital electron populations 1.69775 1.08099 1.29514 1.49154 1.26122 0.96488 1.02654 0.95844 0.85507 0.79791 0.76881 0.80374 1.17625 1.19440 1.15325 1.19047 0.81041 0.95329 1.49990 0.92086 1.41914 1.06019 1.07192 1.66500 1.18191 0.87461 0.84056 0.83248 1.90706 1.70519 1.31561 1.55511 1.19812 0.92789 0.94120 1.10377 1.21274 0.94137 0.96415 0.94809 1.20683 0.92461 0.97843 1.05223 1.19067 0.83387 0.93058 0.93059 1.86160 1.14573 1.33932 1.86284 1.24713 0.93860 0.84122 0.99714 1.23548 0.98162 1.01341 0.96663 1.22664 0.98511 0.98816 0.96850 1.23209 0.91696 1.00717 1.00709 1.21144 0.91362 0.99693 1.10210 1.20833 0.92165 0.87046 0.99565 1.98390 1.77594 1.30021 1.96136 0.90857 0.77620 0.83058 0.81046 0.87615 0.89162 0.90619 0.88627 0.89218 0.89470 0.88689 0.82139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.60 13.96 21.68 0.30 -55.30 16 2 C -0.01 -0.63 5.50 84.95 0.47 -0.17 16 3 Si 0.96 38.31 27.74 68.60 1.90 40.22 16 4 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 7 C -0.33 -19.30 10.16 84.09 0.85 -18.45 16 8 H 0.06 4.28 7.38 -2.91 -0.02 4.26 16 9 N -0.58 -28.43 5.03 -309.98 -1.56 -29.99 16 10 C 0.48 23.69 7.70 86.66 0.67 24.36 16 11 O -0.60 -34.27 13.53 -4.12 -0.06 -34.33 16 12 C -0.17 -6.30 5.88 -20.07 -0.12 -6.42 16 13 C -0.05 -1.35 9.53 22.51 0.21 -1.14 16 14 C -0.14 -3.28 9.97 22.33 0.22 -3.06 16 15 C 0.16 3.77 6.69 22.63 0.15 3.92 16 16 O -0.30 -5.84 10.14 -90.40 -0.92 -6.76 16 17 C 0.03 0.46 3.62 31.12 0.11 0.57 16 18 C -0.16 -1.96 7.91 31.12 0.25 -1.72 16 19 C -0.13 -1.09 8.08 31.12 0.25 -0.84 16 20 C -0.13 -1.30 7.91 31.12 0.25 -1.05 16 21 C -0.20 -5.33 8.77 22.35 0.20 -5.13 16 22 C 0.03 1.12 6.35 22.59 0.14 1.26 16 23 Cl -0.05 -1.93 26.01 -2.72 -0.07 -2.00 16 24 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 25 H 0.39 15.87 3.78 -92.71 -0.35 15.52 16 26 H 0.15 3.79 6.39 -2.91 -0.02 3.78 16 27 H 0.17 2.78 8.06 -2.91 -0.02 2.75 16 28 H 0.11 1.48 6.03 -2.38 -0.01 1.46 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.16 3.35 5.93 -2.91 -0.02 3.33 16 Total: -1.00 -75.17 309.94 3.99 -71.18 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.73 Total: 24.84 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 3.66 Total: -7.87 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -1.26 Total: -85.29 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.97 Total: -41.09 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 1.90 Total: 40.22 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.07 Total: -2.00 kcal Total: -75.17 3.99 -71.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123099924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.542 kcal (2) G-P(sol) polarization free energy of solvation -75.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds