Wall clock time and date at job start Tue Mar 31 2020 07:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38126 * 119.54296 * 2 1 4 4 C 1.39878 * 119.02946 * 179.97438 * 3 2 1 5 5 C 1.48047 * 120.92300 * 180.02562 * 4 3 2 6 6 O 1.21426 * 119.99769 * 0.28604 * 5 4 3 7 7 O 1.34669 * 120.00123 * 180.29412 * 5 4 3 8 8 C 1.45201 * 116.99909 * 185.50464 * 7 5 4 9 9 C 1.52993 * 109.46937 * 179.33340 * 8 7 5 10 10 C 1.50696 * 115.55509 * 305.81665 * 9 8 7 11 11 H 1.07997 * 120.00838 * 144.65627 * 10 9 8 12 12 C 1.37878 * 119.99840 * 324.66714 * 10 9 8 13 13 N 1.31523 * 120.00068 * 345.83304 * 12 10 9 14 14 Si 1.86800 * 120.00326 * 165.83289 * 12 10 9 15 15 H 1.48496 * 109.46887 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.46905 * 119.99944 * 14 12 10 17 17 H 1.48499 * 109.47380 * 239.99799 * 14 12 10 18 18 C 1.53007 * 117.49763 * 160.14779 * 9 8 7 19 19 C 1.53004 * 117.50220 * 91.48948 * 9 8 7 20 20 C 1.39829 * 118.15534 * 359.97438 * 4 3 2 21 21 C 1.38301 * 118.98504 * 0.02562 * 20 4 3 22 22 Cl 1.73604 * 119.56313 * 180.02562 * 21 20 4 23 23 N 1.31823 * 119.53635 * 179.73655 * 2 1 3 24 24 H 1.09002 * 109.47729 * 89.99292 * 1 2 3 25 25 H 1.09003 * 109.47079 * 210.00015 * 1 2 3 26 26 H 1.09002 * 109.47065 * 329.99763 * 1 2 3 27 27 H 1.08002 * 120.48493 * 359.96304 * 3 2 1 28 28 H 1.09005 * 109.47189 * 299.32943 * 8 7 5 29 29 H 1.08993 * 109.47436 * 59.33214 * 8 7 5 30 30 H 0.96990 * 120.00082 * 185.09699 * 13 12 10 31 31 H 1.09000 * 117.49787 * 359.97438 * 18 9 8 32 32 H 1.09000 * 117.49709 * 145.01919 * 18 9 8 33 33 H 1.09003 * 117.50036 * 214.98285 * 19 9 8 34 34 H 1.09002 * 117.49561 * 359.97354 * 19 9 8 35 35 H 1.07996 * 120.50377 * 180.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1880 1.2017 0.0000 4 6 3.5868 1.1891 0.0005 5 6 4.3589 2.4523 0.0011 6 8 3.7783 3.5187 0.0064 7 8 5.7052 2.4186 -0.0043 8 6 6.3969 3.6891 0.1207 9 6 7.9080 3.4501 0.1115 10 6 8.4163 2.4634 1.1308 11 1 9.2449 1.8146 0.8881 12 6 7.8234 2.3887 2.3733 13 7 7.0144 3.3449 2.7745 14 14 8.1690 0.9293 3.4870 15 1 9.1049 -0.0016 2.8069 16 1 8.7787 1.4071 4.7540 17 1 6.8977 0.2222 3.7853 18 6 8.8090 4.6379 -0.2324 19 6 8.6231 3.5009 -1.2402 20 6 4.2355 -0.0496 0.0016 21 6 3.4747 -1.2045 0.0016 22 17 4.2646 -2.7505 0.0036 23 7 2.1568 -1.1469 0.0053 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6485 2.1373 -0.0006 28 1 6.1260 4.3341 -0.7152 29 1 6.1105 4.1681 1.0569 30 1 6.6557 3.3304 3.6755 31 1 8.3252 5.5895 -0.4524 32 1 9.7695 4.7054 0.2785 33 1 9.4613 2.8208 -1.3921 34 1 8.0168 3.7042 -2.1230 35 1 5.3141 -0.1035 0.0025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125035394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:45 Heat of formation + Delta-G solvation = -32.301180 kcal Electronic energy + Delta-G solvation = -21169.078084 eV Core-core repulsion = 17773.108363 eV Total energy + Delta-G solvation = -3395.969721 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.68689 -39.33787 -36.89729 -36.69519 -35.24232 -33.32669 -32.38189 -32.23493 -27.83941 -27.07393 -25.56133 -24.37285 -22.97757 -21.32019 -20.39596 -19.28560 -17.82069 -17.10543 -16.33654 -15.98475 -15.78834 -15.68669 -14.93962 -14.89639 -14.60006 -13.86815 -13.63967 -13.19370 -13.08868 -12.55932 -12.23297 -12.22459 -11.99154 -11.70895 -11.51824 -11.34645 -11.03596 -10.89835 -10.56022 -10.43297 -10.36587 -10.00569 -9.86916 -9.67466 -9.52328 -9.20979 -8.96938 -8.84215 -8.18743 -6.15048 -4.16078 0.51654 0.78625 1.69409 2.78199 3.12472 3.21652 3.32063 3.35544 3.62916 4.10758 4.30564 4.66336 4.70981 4.85420 4.94251 5.01865 5.30707 5.38125 5.39275 5.48866 5.67284 5.78427 5.91729 6.00326 6.11404 6.27902 6.35074 6.50501 6.58354 6.68131 6.87896 7.17808 7.26035 7.30030 7.51644 7.81786 8.23418 8.34231 8.78596 9.43392 10.88008 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014187 B = 0.005529 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.197559 B = 5062.873641 C = 5916.266051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.136 3.864 3 C -0.113 4.113 4 C -0.047 4.047 5 C 0.502 3.498 6 O -0.509 6.509 7 O -0.316 6.316 8 C 0.114 3.886 9 C 0.046 3.954 10 C -0.483 4.483 11 H 0.064 0.936 12 C 0.076 3.924 13 N -0.882 5.882 14 Si 0.889 3.111 15 H -0.269 1.269 16 H -0.284 1.284 17 H -0.280 1.280 18 C -0.190 4.190 19 C -0.208 4.208 20 C -0.103 4.103 21 C 0.170 3.830 22 Cl -0.025 7.025 23 N -0.464 5.464 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.156 0.844 28 H 0.033 0.967 29 H 0.114 0.886 30 H 0.263 0.737 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.930 -6.195 -5.321 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.002 4.002 3 C -0.133 4.133 4 C -0.057 4.057 5 C 0.345 3.655 6 O -0.400 6.400 7 O -0.230 6.230 8 C 0.042 3.958 9 C 0.046 3.954 10 C -0.520 4.520 11 H 0.083 0.917 12 C -0.127 4.127 13 N -0.520 5.520 14 Si 0.716 3.284 15 H -0.194 1.194 16 H -0.210 1.210 17 H -0.206 1.206 18 C -0.228 4.228 19 C -0.246 4.246 20 C -0.124 4.124 21 C 0.006 3.994 22 Cl 0.004 6.996 23 N -0.177 5.177 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.174 0.826 28 H 0.051 0.949 29 H 0.132 0.868 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.590 -6.740 -5.182 13.580 hybrid contribution 0.856 0.058 0.658 1.081 sum -9.734 -6.682 -4.525 12.644 Atomic orbital electron populations 1.20741 0.87458 1.04045 1.03570 1.21100 0.97179 0.86430 0.95539 1.22209 0.92926 1.00468 0.97695 1.19688 0.93344 0.92051 1.00581 1.20717 0.83071 0.87860 0.73843 1.90771 1.71746 1.31333 1.46105 1.86524 1.16619 1.39207 1.80610 1.22927 0.91124 0.79823 1.01936 1.18876 0.87477 0.96434 0.92637 1.20442 1.16349 1.18281 0.96944 0.91734 1.24924 0.94293 0.95722 0.97804 1.69809 1.32819 1.31366 1.17963 0.86572 0.78409 0.83108 0.80290 1.19362 1.20991 1.20602 1.22972 1.02749 0.92698 1.04393 1.22976 1.04385 1.03243 0.93948 1.22331 1.03287 0.89916 0.96850 1.21480 0.89487 0.87795 1.00610 1.98412 1.77292 1.27432 1.96474 1.66665 1.08583 1.30513 1.11986 0.89910 0.90027 0.90026 0.82636 0.94924 0.86807 0.92659 0.91436 0.89669 0.90196 0.91251 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.16 36.00 0.37 -0.49 16 2 C 0.14 1.73 6.78 -82.64 -0.56 1.17 16 3 C -0.11 -1.59 9.31 -39.01 -0.36 -1.95 16 4 C -0.05 -0.81 5.91 -104.67 -0.62 -1.42 16 5 C 0.50 10.26 7.92 34.75 0.28 10.53 16 6 O -0.51 -11.08 16.23 -19.21 -0.31 -11.39 16 7 O -0.32 -7.14 9.25 -40.41 -0.37 -7.52 16 8 C 0.11 2.71 4.60 37.15 0.17 2.88 16 9 C 0.05 1.11 2.10 -155.66 -0.33 0.78 16 10 C -0.48 -12.63 8.76 -34.44 -0.30 -12.93 16 11 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 12 C 0.08 1.99 5.15 -17.82 -0.09 1.89 16 13 N -0.88 -23.85 10.92 55.43 0.61 -23.25 16 14 Si 0.89 20.52 29.56 -169.99 -5.03 15.49 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 18 C -0.19 -4.11 9.96 -26.69 -0.27 -4.37 16 19 C -0.21 -4.34 9.92 -26.69 -0.26 -4.61 16 20 C -0.10 -1.68 9.47 -38.96 -0.37 -2.05 16 21 C 0.17 2.58 7.27 -17.49 -0.13 2.46 16 22 Cl -0.02 -0.34 29.10 -51.86 -1.51 -1.85 16 23 N -0.46 -6.75 10.22 -6.67 -0.07 -6.82 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.16 1.94 7.74 -52.49 -0.41 1.53 16 28 H 0.03 0.72 8.05 -51.93 -0.42 0.30 16 29 H 0.11 2.98 6.08 -51.93 -0.32 2.66 16 30 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 33 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.17 2.75 7.71 -52.49 -0.40 2.35 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -28.52 326.61 -8.29 -36.80 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -4.05 Total: 1.71 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.48 Total: -8.11 kcal Atomic # 7 Polarization: -30.60 SS G_CDS: 0.54 Total: -30.07 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.69 Total: -18.90 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.51 Total: -1.85 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.52 -8.29 -36.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125035394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.503 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds