Wall clock time and date at job start Tue Mar 31 2020 07:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38126 * 119.54296 * 2 1 4 4 C 1.39878 * 119.02946 * 179.97438 * 3 2 1 5 5 C 1.48047 * 120.92300 * 180.02562 * 4 3 2 6 6 O 1.21426 * 119.99769 * 0.28604 * 5 4 3 7 7 O 1.34669 * 120.00123 * 180.29412 * 5 4 3 8 8 C 1.45201 * 116.99909 * 185.50464 * 7 5 4 9 9 C 1.52993 * 109.46937 * 179.33340 * 8 7 5 10 10 C 1.50696 * 115.55509 * 305.81665 * 9 8 7 11 11 H 1.07997 * 120.00838 * 144.65627 * 10 9 8 12 12 C 1.37878 * 119.99840 * 324.66714 * 10 9 8 13 13 N 1.31523 * 120.00068 * 345.83304 * 12 10 9 14 14 Si 1.86800 * 120.00326 * 165.83289 * 12 10 9 15 15 H 1.48496 * 109.46887 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.46905 * 119.99944 * 14 12 10 17 17 H 1.48499 * 109.47380 * 239.99799 * 14 12 10 18 18 C 1.53007 * 117.49763 * 160.14779 * 9 8 7 19 19 C 1.53004 * 117.50220 * 91.48948 * 9 8 7 20 20 C 1.39829 * 118.15534 * 359.97438 * 4 3 2 21 21 C 1.38301 * 118.98504 * 0.02562 * 20 4 3 22 22 Cl 1.73604 * 119.56313 * 180.02562 * 21 20 4 23 23 N 1.31823 * 119.53635 * 179.73655 * 2 1 3 24 24 H 1.09002 * 109.47729 * 89.99292 * 1 2 3 25 25 H 1.09003 * 109.47079 * 210.00015 * 1 2 3 26 26 H 1.09002 * 109.47065 * 329.99763 * 1 2 3 27 27 H 1.08002 * 120.48493 * 359.96304 * 3 2 1 28 28 H 1.09005 * 109.47189 * 299.32943 * 8 7 5 29 29 H 1.08993 * 109.47436 * 59.33214 * 8 7 5 30 30 H 0.96990 * 120.00082 * 185.09699 * 13 12 10 31 31 H 1.09000 * 117.49787 * 359.97438 * 18 9 8 32 32 H 1.09000 * 117.49709 * 145.01919 * 18 9 8 33 33 H 1.09003 * 117.50036 * 214.98285 * 19 9 8 34 34 H 1.09002 * 117.49561 * 359.97354 * 19 9 8 35 35 H 1.07996 * 120.50377 * 180.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1880 1.2017 0.0000 4 6 3.5868 1.1891 0.0005 5 6 4.3589 2.4523 0.0011 6 8 3.7783 3.5187 0.0064 7 8 5.7052 2.4186 -0.0043 8 6 6.3969 3.6891 0.1207 9 6 7.9080 3.4501 0.1115 10 6 8.4163 2.4634 1.1308 11 1 9.2449 1.8146 0.8881 12 6 7.8234 2.3887 2.3733 13 7 7.0144 3.3449 2.7745 14 14 8.1690 0.9293 3.4870 15 1 9.1049 -0.0016 2.8069 16 1 8.7787 1.4071 4.7540 17 1 6.8977 0.2222 3.7853 18 6 8.8090 4.6379 -0.2324 19 6 8.6231 3.5009 -1.2402 20 6 4.2355 -0.0496 0.0016 21 6 3.4747 -1.2045 0.0016 22 17 4.2646 -2.7505 0.0036 23 7 2.1568 -1.1469 0.0053 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6485 2.1373 -0.0006 28 1 6.1260 4.3341 -0.7152 29 1 6.1105 4.1681 1.0569 30 1 6.6557 3.3304 3.6755 31 1 8.3252 5.5895 -0.4524 32 1 9.7695 4.7054 0.2785 33 1 9.4613 2.8208 -1.3921 34 1 8.0168 3.7042 -2.1230 35 1 5.3141 -0.1035 0.0025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125035394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:45 Heat of formation + Delta-G solvation = -46.281452 kcal Electronic energy + Delta-G solvation = -21169.684314 eV Core-core repulsion = 17773.108363 eV Total energy + Delta-G solvation = -3396.575951 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.98428 -40.84731 -38.61610 -37.85315 -36.95966 -34.48707 -34.20626 -33.47329 -28.79741 -28.76913 -27.50101 -25.80112 -24.11373 -23.01209 -21.83564 -21.15069 -19.21567 -18.75681 -17.87412 -17.41078 -17.38104 -16.93683 -16.57962 -16.38328 -15.95840 -15.54010 -14.97879 -14.63831 -13.99841 -13.90060 -13.88438 -13.60576 -13.20344 -13.14042 -12.89452 -12.81625 -12.57939 -12.45012 -12.34472 -12.14449 -12.00586 -11.53441 -11.38996 -11.22804 -11.12122 -10.96409 -10.66948 -10.07467 -10.06452 -8.12754 -6.18684 -0.76207 -0.34947 0.55335 1.31337 1.36529 1.42848 1.51643 1.62140 2.38225 2.39420 2.96872 3.07730 3.37201 3.54216 3.63060 3.69640 3.86636 4.16935 4.22635 4.27813 4.36940 4.55824 4.69647 4.75680 4.79466 4.86370 4.92229 4.95343 4.97648 5.17145 5.33949 5.36672 5.50909 5.57848 5.80293 6.31728 6.40411 6.63813 6.80063 7.42295 8.88741 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014187 B = 0.005529 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.197559 B = 5062.873641 C = 5916.266051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.146 3.854 3 C -0.105 4.105 4 C -0.066 4.066 5 C 0.500 3.500 6 O -0.528 6.528 7 O -0.329 6.329 8 C 0.123 3.877 9 C 0.007 3.993 10 C -0.495 4.495 11 H 0.057 0.943 12 C 0.037 3.963 13 N -0.906 5.906 14 Si 0.938 3.062 15 H -0.263 1.263 16 H -0.281 1.281 17 H -0.282 1.282 18 C -0.184 4.184 19 C -0.185 4.185 20 C -0.115 4.115 21 C 0.166 3.834 22 Cl -0.015 7.015 23 N -0.469 5.469 24 H 0.103 0.897 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.173 0.827 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.261 0.739 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.232 -7.020 -5.942 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.007 3.993 3 C -0.125 4.125 4 C -0.075 4.075 5 C 0.345 3.655 6 O -0.420 6.420 7 O -0.243 6.243 8 C 0.050 3.950 9 C 0.007 3.993 10 C -0.533 4.533 11 H 0.075 0.925 12 C -0.164 4.164 13 N -0.544 5.544 14 Si 0.764 3.236 15 H -0.187 1.187 16 H -0.207 1.207 17 H -0.208 1.208 18 C -0.221 4.221 19 C -0.222 4.222 20 C -0.136 4.136 21 C 0.003 3.997 22 Cl 0.014 6.986 23 N -0.183 5.183 24 H 0.122 0.878 25 H 0.107 0.893 26 H 0.121 0.879 27 H 0.190 0.810 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.876 -7.578 -5.814 15.240 hybrid contribution 1.203 0.307 0.806 1.480 sum -10.673 -7.271 -5.008 13.852 Atomic orbital electron populations 1.20932 0.83920 1.05478 1.05294 1.21828 0.99148 0.85259 0.93031 1.22476 0.91611 1.01906 0.96535 1.19594 0.94342 0.90580 1.03017 1.21287 0.82414 0.89024 0.72823 1.90741 1.71750 1.32374 1.47130 1.86523 1.18009 1.38732 1.81046 1.22653 0.91241 0.80348 1.00743 1.19009 0.87978 0.97868 0.94448 1.20654 1.16224 1.18700 0.97681 0.92465 1.25492 0.94415 0.97450 0.99001 1.69935 1.33804 1.32627 1.18024 0.85803 0.78139 0.80773 0.78908 1.18724 1.20697 1.20802 1.22971 1.01928 0.93048 1.04203 1.22993 1.03744 1.02262 0.93237 1.22210 1.02928 0.90317 0.98098 1.21509 0.89811 0.87885 1.00487 1.98411 1.77271 1.26514 1.96401 1.66830 1.08087 1.31276 1.12074 0.87815 0.89325 0.87876 0.80960 0.93899 0.89762 0.92969 0.89949 0.89996 0.89638 0.89284 0.82622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 10.16 71.23 0.72 -0.59 16 2 C 0.15 3.35 6.78 42.53 0.29 3.64 16 3 C -0.11 -2.79 9.31 22.64 0.21 -2.57 16 4 C -0.07 -2.24 5.91 -19.89 -0.12 -2.36 16 5 C 0.50 20.71 7.92 70.43 0.56 21.26 16 6 O -0.53 -23.21 16.23 20.08 0.33 -22.88 16 7 O -0.33 -15.18 9.25 -55.78 -0.52 -15.69 16 8 C 0.12 5.91 4.60 71.98 0.33 6.24 16 9 C 0.01 0.35 2.10 -52.93 -0.11 0.24 16 10 C -0.50 -26.13 8.76 25.60 0.22 -25.90 16 11 H 0.06 3.01 7.85 -2.91 -0.02 2.99 16 12 C 0.04 1.96 5.15 84.65 0.44 2.39 16 13 N -0.91 -49.97 10.92 21.45 0.23 -49.73 16 14 Si 0.94 42.41 29.56 68.60 2.03 44.44 16 15 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 C -0.18 -7.77 9.96 30.62 0.30 -7.47 16 19 C -0.19 -7.46 9.92 30.62 0.30 -7.16 16 20 C -0.11 -3.73 9.47 22.67 0.21 -3.52 16 21 C 0.17 4.90 7.27 84.70 0.62 5.52 16 22 Cl -0.01 -0.39 29.10 -2.72 -0.08 -0.47 16 23 N -0.47 -12.76 10.22 -175.01 -1.79 -14.55 16 24 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.10 0.98 8.08 -2.39 -0.02 0.96 16 27 H 0.17 3.92 7.74 -2.91 -0.02 3.90 16 28 H 0.04 1.90 8.05 -2.38 -0.02 1.88 16 29 H 0.08 4.54 6.08 -2.39 -0.01 4.53 16 30 H 0.26 13.90 8.32 -92.72 -0.77 13.12 16 31 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 33 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.16 5.32 7.71 -2.91 -0.02 5.29 16 Total: -1.00 -61.14 326.61 5.30 -55.84 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.11 Total: 13.31 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 3.98 Total: -10.28 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -1.55 Total: -64.28 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -0.19 Total: -38.57 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -61.14 5.30 -55.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125035394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.558 kcal (2) G-P(sol) polarization free energy of solvation -61.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds