Wall clock time and date at job start Tue Mar 31 2020 06:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 119.99989 * 2 1 4 4 H 1.48498 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46846 * 299.99654 * 3 2 1 6 6 H 1.48500 * 109.47382 * 59.99839 * 3 2 1 7 7 C 1.38795 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00045 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99984 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99706 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46682 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99829 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99739 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00051 * 179.97438 * 13 11 10 15 15 C 1.50696 * 115.55194 * 325.58527 * 14 13 11 16 16 C 1.38218 * 120.01212 * 96.61064 * 15 14 13 17 17 C 1.38223 * 120.02747 * 179.97438 * 16 15 14 18 18 C 1.38270 * 120.04797 * 0.02562 * 17 16 15 19 19 C 1.38169 * 120.02924 * 359.96083 * 18 17 16 20 20 C 1.38436 * 120.01622 * 276.57416 * 15 14 13 21 21 F 1.35109 * 120.02309 * 0.03861 * 20 15 14 22 22 C 1.53005 * 117.51673 * 111.28588 * 14 13 11 23 23 C 1.53005 * 59.99992 * 107.48302 * 22 14 13 24 24 H 0.97006 * 119.99656 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47203 * 60.00247 * 10 9 7 26 26 H 1.08995 * 109.47462 * 300.00127 * 10 9 7 27 27 H 0.97006 * 119.99950 * 0.02562 * 13 11 10 28 28 H 1.08003 * 119.99158 * 359.96014 * 16 15 14 29 29 H 1.08005 * 119.97857 * 180.02562 * 17 16 15 30 30 H 1.08005 * 119.98490 * 179.97438 * 18 17 16 31 31 H 1.08003 * 120.01890 * 179.74488 * 19 18 17 32 32 H 1.09000 * 117.49467 * 214.97049 * 22 14 13 33 33 H 1.08995 * 117.49829 * 359.97438 * 22 14 13 34 34 H 1.09000 * 117.49898 * 252.51110 * 23 22 14 35 35 H 1.08995 * 117.51780 * 107.47799 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5022 0.0021 13 7 2.8440 -6.3431 0.0008 14 6 2.3303 -7.7150 0.0019 15 6 1.0528 -7.9301 0.7718 16 6 -0.1613 -7.9272 0.1112 17 6 -1.3332 -8.1250 0.8169 18 6 -1.2925 -8.3254 2.1844 19 6 -0.0800 -8.3289 2.8469 20 6 1.0948 -8.1314 2.1408 21 9 2.2810 -8.1344 2.7876 22 6 2.5424 -8.5504 -1.2623 23 6 3.3536 -8.8526 -0.0006 24 1 -0.4850 0.8401 -0.0004 25 1 3.1244 -3.7313 0.8905 26 1 3.1245 -3.7313 -0.8894 27 1 3.8009 -6.1834 0.0004 28 1 -0.1944 -7.7702 -0.9568 29 1 -2.2814 -8.1230 0.2999 30 1 -2.2088 -8.4794 2.7349 31 1 -0.0487 -8.4814 3.9157 32 1 1.7579 -9.2555 -1.5371 33 1 3.0639 -8.0791 -2.0953 34 1 4.4090 -8.5802 -0.0035 35 1 3.1028 -9.7562 0.5548 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126940007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:42 Heat of formation + Delta-G solvation = -24.710470 kcal Electronic energy + Delta-G solvation = -20958.337489 eV Core-core repulsion = 17577.113422 eV Total energy + Delta-G solvation = -3381.224067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.76004 -40.09824 -38.35033 -36.93447 -32.73175 -32.42629 -30.82308 -30.25601 -28.91840 -25.49350 -23.75241 -23.15967 -21.99402 -21.29485 -19.77022 -17.85703 -17.59082 -16.62724 -16.35397 -16.10136 -15.46260 -15.33227 -14.85720 -14.80535 -14.53167 -14.05865 -13.94020 -13.36312 -13.11478 -12.98279 -12.56159 -12.26186 -12.14913 -11.81984 -11.70995 -11.31169 -11.07307 -11.01548 -10.80932 -10.77961 -10.63793 -9.80341 -9.65511 -9.07471 -8.71914 -8.61720 -8.48500 -8.22784 -6.49238 -6.21967 -3.91950 1.22152 1.36502 2.95844 3.03278 3.21466 3.27154 3.31725 3.59116 3.63930 3.81331 4.20394 4.27681 4.40499 4.66813 4.74421 4.95483 5.08866 5.10935 5.13536 5.31452 5.39817 5.44214 5.50885 5.67821 5.69556 5.88660 5.89966 5.95862 6.14353 6.15385 6.20357 6.43537 6.52600 6.64309 6.98772 7.59908 7.70275 8.35407 8.63341 9.23741 10.85525 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021687 B = 0.004022 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.793092 B = 6959.193932 C = 7468.574302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.057 6.057 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.501 6.501 13 N -0.704 5.704 14 C 0.149 3.851 15 C -0.078 4.078 16 C -0.030 4.030 17 C -0.134 4.134 18 C -0.087 4.087 19 C -0.164 4.164 20 C 0.110 3.890 21 F -0.140 7.140 22 C -0.178 4.178 23 C -0.167 4.167 24 H 0.268 0.732 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.401 0.599 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.847 -19.886 0.978 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.170 5.830 10 C -0.303 4.303 11 C 0.319 3.681 12 O -0.374 6.374 13 N -0.358 5.358 14 C 0.061 3.939 15 C -0.079 4.079 16 C -0.049 4.049 17 C -0.152 4.152 18 C -0.105 4.105 19 C -0.183 4.183 20 C 0.090 3.910 21 F -0.118 7.118 22 C -0.217 4.217 23 C -0.205 4.205 24 H 0.077 0.923 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.236 0.764 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.733 -20.071 1.008 20.171 hybrid contribution 2.726 1.566 0.166 3.148 sum 4.459 -18.505 1.174 19.071 Atomic orbital electron populations 1.70029 1.05949 1.27322 1.47026 1.24982 0.95015 0.99008 0.94536 0.86124 0.79607 0.81906 0.77907 1.19622 1.20550 1.20557 1.22918 0.94954 0.91704 1.58769 0.90925 1.85364 1.04774 0.96192 1.96695 1.23541 1.06654 0.95289 1.04840 1.20344 0.86703 0.85971 0.75082 1.90711 1.15036 1.85072 1.46541 1.45443 1.09681 1.03119 1.77513 1.18776 0.93640 0.81464 1.00020 1.18764 0.94013 1.03908 0.91260 1.20736 0.90479 0.93226 1.00439 1.21140 0.98405 1.01355 0.94335 1.20968 0.96998 0.98021 0.94538 1.21013 0.91493 1.05359 1.00462 1.17495 0.81085 1.02605 0.89817 1.91470 1.44837 1.93994 1.81528 1.23524 1.03136 1.02754 0.92261 1.23344 0.97151 0.98726 1.01251 0.92254 0.89356 0.89285 0.76354 0.85330 0.85438 0.85321 0.85091 0.87967 0.87973 0.87983 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.76 16 10 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 11 C 0.53 10.06 7.69 -10.98 -0.08 9.98 16 12 O -0.50 -10.93 12.59 5.56 0.07 -10.86 16 13 N -0.70 -10.10 5.59 -48.68 -0.27 -10.37 16 14 C 0.15 1.94 2.15 -132.97 -0.29 1.66 16 15 C -0.08 -1.13 3.69 -104.56 -0.39 -1.52 16 16 C -0.03 -0.43 7.44 -39.59 -0.29 -0.72 16 17 C -0.13 -1.71 10.04 -39.58 -0.40 -2.10 16 18 C -0.09 -1.04 10.04 -39.59 -0.40 -1.44 16 19 C -0.16 -2.14 10.03 -39.52 -0.40 -2.53 16 20 C 0.11 1.61 7.19 -39.42 -0.28 1.33 16 21 F -0.14 -2.08 16.54 2.25 0.04 -2.04 16 22 C -0.18 -1.82 9.86 -26.73 -0.26 -2.08 16 23 C -0.17 -1.63 9.78 -26.73 -0.26 -1.89 16 24 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 26 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 27 H 0.40 4.57 8.77 -40.82 -0.36 4.22 16 28 H 0.13 1.77 8.01 -52.48 -0.42 1.35 16 29 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 30 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 31 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -34.21 324.33 -8.54 -42.75 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.12 Total: 3.66 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -2.63 Total: -15.26 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.46 Total: -35.87 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.07 Total: -10.86 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.21 -8.54 -42.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126940007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.036 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds