Wall clock time and date at job start Tue Mar 31 2020 06:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 119.99989 * 2 1 4 4 H 1.48498 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46846 * 299.99654 * 3 2 1 6 6 H 1.48500 * 109.47382 * 59.99839 * 3 2 1 7 7 C 1.38795 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00045 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99984 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99706 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46682 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99829 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99739 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00051 * 179.97438 * 13 11 10 15 15 C 1.50696 * 115.55194 * 325.58527 * 14 13 11 16 16 C 1.38218 * 120.01212 * 96.61064 * 15 14 13 17 17 C 1.38223 * 120.02747 * 179.97438 * 16 15 14 18 18 C 1.38270 * 120.04797 * 0.02562 * 17 16 15 19 19 C 1.38169 * 120.02924 * 359.96083 * 18 17 16 20 20 C 1.38436 * 120.01622 * 276.57416 * 15 14 13 21 21 F 1.35109 * 120.02309 * 0.03861 * 20 15 14 22 22 C 1.53005 * 117.51673 * 111.28588 * 14 13 11 23 23 C 1.53005 * 59.99992 * 107.48302 * 22 14 13 24 24 H 0.97006 * 119.99656 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47203 * 60.00247 * 10 9 7 26 26 H 1.08995 * 109.47462 * 300.00127 * 10 9 7 27 27 H 0.97006 * 119.99950 * 0.02562 * 13 11 10 28 28 H 1.08003 * 119.99158 * 359.96014 * 16 15 14 29 29 H 1.08005 * 119.97857 * 180.02562 * 17 16 15 30 30 H 1.08005 * 119.98490 * 179.97438 * 18 17 16 31 31 H 1.08003 * 120.01890 * 179.74488 * 19 18 17 32 32 H 1.09000 * 117.49467 * 214.97049 * 22 14 13 33 33 H 1.08995 * 117.49829 * 359.97438 * 22 14 13 34 34 H 1.09000 * 117.49898 * 252.51110 * 23 22 14 35 35 H 1.08995 * 117.51780 * 107.47799 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5022 0.0021 13 7 2.8440 -6.3431 0.0008 14 6 2.3303 -7.7150 0.0019 15 6 1.0528 -7.9301 0.7718 16 6 -0.1613 -7.9272 0.1112 17 6 -1.3332 -8.1250 0.8169 18 6 -1.2925 -8.3254 2.1844 19 6 -0.0800 -8.3289 2.8469 20 6 1.0948 -8.1314 2.1408 21 9 2.2810 -8.1344 2.7876 22 6 2.5424 -8.5504 -1.2623 23 6 3.3536 -8.8526 -0.0006 24 1 -0.4850 0.8401 -0.0004 25 1 3.1244 -3.7313 0.8905 26 1 3.1245 -3.7313 -0.8894 27 1 3.8009 -6.1834 0.0004 28 1 -0.1944 -7.7702 -0.9568 29 1 -2.2814 -8.1230 0.2999 30 1 -2.2088 -8.4794 2.7349 31 1 -0.0487 -8.4814 3.9157 32 1 1.7579 -9.2555 -1.5371 33 1 3.0639 -8.0791 -2.0953 34 1 4.4090 -8.5802 -0.0035 35 1 3.1028 -9.7562 0.5548 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126940007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:41 Heat of formation + Delta-G solvation = -46.205308 kcal Electronic energy + Delta-G solvation = -20959.269575 eV Core-core repulsion = 17577.113422 eV Total energy + Delta-G solvation = -3382.156153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.84764 -41.24380 -39.54149 -37.99249 -34.59861 -34.02053 -31.79493 -31.25306 -30.47692 -27.67840 -24.74620 -24.06825 -22.93046 -22.54371 -20.92631 -19.85344 -18.66288 -17.80926 -17.69767 -17.13679 -16.89130 -16.59877 -16.48749 -16.21221 -15.95246 -15.35346 -14.97688 -14.81958 -14.52956 -14.17414 -13.97052 -13.67861 -13.21823 -13.15555 -12.93209 -12.84677 -12.60974 -12.48486 -12.24262 -11.87187 -11.74076 -11.55469 -11.16644 -11.02285 -10.28429 -9.85064 -9.68335 -9.55544 -8.65995 -8.35974 -6.13082 0.20882 0.34615 1.25807 1.40170 1.45543 1.56903 1.61094 2.18273 2.26763 2.66911 2.81167 2.98371 3.27465 3.35044 3.41097 3.79115 3.83958 3.95369 4.07827 4.17507 4.28273 4.39918 4.47895 4.49523 4.56677 4.68677 4.90966 4.99462 5.14112 5.15319 5.22408 5.40872 5.42553 5.48578 5.55913 6.00357 6.18805 6.49165 7.05756 7.26961 8.73453 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021687 B = 0.004022 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.793092 B = 6959.193932 C = 7468.574302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.997 3.003 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.080 0.920 9 S -0.140 6.140 10 C -0.130 4.130 11 C 0.532 3.468 12 O -0.536 6.536 13 N -0.684 5.684 14 C 0.111 3.889 15 C -0.089 4.089 16 C -0.049 4.049 17 C -0.142 4.142 18 C -0.088 4.088 19 C -0.172 4.172 20 C 0.084 3.916 21 F -0.146 7.146 22 C -0.165 4.165 23 C -0.143 4.143 24 H 0.271 0.729 25 H 0.101 0.899 26 H 0.108 0.892 27 H 0.416 0.584 28 H 0.124 0.876 29 H 0.146 0.854 30 H 0.159 0.841 31 H 0.149 0.851 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.497 -20.472 0.995 21.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.819 3.181 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.696 4.696 8 H 0.098 0.902 9 S 0.087 5.913 10 C -0.281 4.281 11 C 0.318 3.682 12 O -0.412 6.412 13 N -0.337 5.337 14 C 0.024 3.976 15 C -0.091 4.091 16 C -0.068 4.068 17 C -0.160 4.160 18 C -0.106 4.106 19 C -0.190 4.190 20 C 0.065 3.935 21 F -0.124 7.124 22 C -0.204 4.204 23 C -0.181 4.181 24 H 0.080 0.920 25 H 0.119 0.881 26 H 0.126 0.874 27 H 0.254 0.746 28 H 0.142 0.858 29 H 0.164 0.836 30 H 0.177 0.823 31 H 0.167 0.833 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.141 0.859 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.429 -20.700 1.021 21.007 hybrid contribution 2.215 1.608 0.166 2.742 sum 5.644 -19.093 1.187 19.945 Atomic orbital electron populations 1.70182 1.07919 1.28547 1.48066 1.26090 0.95946 1.03202 0.93706 0.84928 0.78569 0.76441 0.78152 1.18198 1.19765 1.19918 1.23247 0.95308 0.92250 1.58821 0.90200 1.85482 1.10016 0.98768 1.96998 1.23375 1.03749 0.94699 1.06284 1.20046 0.86616 0.86164 0.75376 1.90702 1.16497 1.85435 1.48563 1.45154 1.09902 1.02994 1.75661 1.19070 0.94745 0.81048 1.02717 1.18960 0.94816 1.03813 0.91494 1.20877 0.91218 0.94152 1.00517 1.21490 0.98855 1.00625 0.95006 1.21346 0.97898 0.96968 0.94425 1.21359 0.91403 1.04744 1.01528 1.17798 0.81458 1.03964 0.90290 1.91441 1.45171 1.94209 1.81599 1.23592 1.03250 1.01584 0.91948 1.23462 0.97489 0.97016 1.00129 0.91966 0.88112 0.87409 0.74578 0.85785 0.83583 0.82302 0.83293 0.87219 0.87109 0.85937 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.02 13.22 21.65 0.29 -55.73 16 2 C 0.02 0.88 5.49 84.86 0.47 1.35 16 3 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -31.59 9.50 67.95 0.65 -30.95 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.14 -7.78 20.57 -56.49 -1.16 -8.94 16 10 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 11 C 0.53 19.95 7.69 87.66 0.67 20.62 16 12 O -0.54 -23.81 12.59 -3.03 -0.04 -23.85 16 13 N -0.68 -18.66 5.59 -426.32 -2.38 -21.05 16 14 C 0.11 2.75 2.15 2.86 0.01 2.76 16 15 C -0.09 -2.57 3.69 -19.82 -0.07 -2.64 16 16 C -0.05 -1.40 7.44 22.26 0.17 -1.23 16 17 C -0.14 -3.54 10.04 22.27 0.22 -3.32 16 18 C -0.09 -2.02 10.04 22.26 0.22 -1.80 16 19 C -0.17 -4.33 10.03 22.31 0.22 -4.10 16 20 C 0.08 2.45 7.19 22.38 0.16 2.61 16 21 F -0.15 -4.24 16.54 44.97 0.74 -3.50 16 22 C -0.17 -3.04 9.86 30.60 0.30 -2.73 16 23 C -0.14 -2.44 9.78 30.60 0.30 -2.14 16 24 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 25 H 0.10 3.81 8.14 -2.40 -0.02 3.79 16 26 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 27 H 0.42 8.56 8.77 -92.70 -0.81 7.74 16 28 H 0.12 3.50 8.01 -2.91 -0.02 3.48 16 29 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 30 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 32 H 0.11 1.85 8.08 -2.39 -0.02 1.83 16 33 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -75.60 324.33 3.53 -72.07 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.30 Total: 21.50 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 3.76 Total: -26.40 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -2.10 Total: -76.77 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.04 Total: -23.85 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.74 Total: -3.50 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -7.78 SS G_CDS: -1.16 Total: -8.94 kcal Total: -75.60 3.53 -72.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126940007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.863 kcal (2) G-P(sol) polarization free energy of solvation -75.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds