Wall clock time and date at job start Tue Mar 31 2020 06:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99924 * 2 1 4 4 H 1.48493 * 109.47466 * 239.99838 * 3 2 1 5 5 H 1.48506 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99752 * 3 2 1 7 7 C 1.38796 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00284 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99856 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00067 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47361 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00133 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00148 * 179.97438 * 11 10 9 14 14 C 1.47228 * 121.33879 * 180.02562 * 13 11 10 15 15 C 1.52787 * 107.90627 * 115.77793 * 14 13 11 16 16 C 1.50603 * 110.85673 * 47.46315 * 15 14 13 17 17 C 1.38995 * 117.60646 * 160.40627 * 16 15 14 18 18 C 1.37914 * 120.63661 * 179.69316 * 17 16 15 19 19 C 1.38228 * 119.85641 * 359.32177 * 18 17 16 20 20 C 1.38188 * 119.68613 * 0.67608 * 19 18 17 21 21 F 1.35101 * 119.77171 * 179.86249 * 20 19 18 22 22 C 1.37638 * 122.85833 * 339.97437 * 16 15 14 23 23 C 1.46681 * 121.33941 * 0.02562 * 13 11 10 24 24 H 0.97002 * 120.00417 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47103 * 59.99288 * 10 9 7 26 26 H 1.09008 * 109.46734 * 300.00227 * 10 9 7 27 27 H 1.09000 * 109.77484 * 356.17151 * 14 13 11 28 28 H 1.09005 * 109.81425 * 235.40024 * 14 13 11 29 29 H 1.09007 * 109.19797 * 287.11403 * 15 14 13 30 30 H 1.08994 * 109.20088 * 167.82078 * 15 14 13 31 31 H 1.08002 * 119.67677 * 359.40698 * 17 16 15 32 32 H 1.08003 * 120.06635 * 179.55657 * 18 17 16 33 33 H 1.07997 * 120.15897 * 180.45188 * 19 18 17 34 34 H 1.08999 * 109.43878 * 344.38753 * 23 13 11 35 35 H 1.09005 * 109.43751 * 104.25919 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 -0.0007 14 6 2.3603 -7.7336 -0.0019 15 6 2.8033 -8.3840 -1.3115 16 6 4.2584 -8.1061 -1.5829 17 6 4.9174 -8.9405 -2.4782 18 6 6.2486 -8.7389 -2.7773 19 6 6.9338 -7.6897 -2.1937 20 6 6.2823 -6.8580 -1.3030 21 9 6.9511 -5.8337 -0.7296 22 6 4.9432 -7.0683 -0.9926 23 6 4.2963 -6.1356 -0.0003 24 1 -0.4851 0.8400 -0.0004 25 1 3.1245 -3.7313 0.8905 26 1 3.1245 -3.7313 -0.8895 27 1 1.2725 -7.7455 0.0663 28 1 2.7887 -8.2746 0.8419 29 1 2.2037 -7.9861 -2.1302 30 1 2.6501 -9.4612 -1.2465 31 1 4.3831 -9.7572 -2.9405 32 1 6.7535 -9.3972 -3.4688 33 1 7.9743 -7.5230 -2.4300 34 1 4.5154 -5.1041 -0.2760 35 1 4.6910 -6.3357 0.9959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132564416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:12 Heat of formation + Delta-G solvation = -55.750832 kcal Electronic energy + Delta-G solvation = -20752.636910 eV Core-core repulsion = 17370.066832 eV Total energy + Delta-G solvation = -3382.570078 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.09956 -40.44405 -38.82638 -36.01338 -33.12072 -32.42332 -31.57866 -30.14443 -28.54579 -25.89001 -25.45824 -23.96829 -22.40682 -21.37312 -18.95005 -17.82544 -17.46057 -16.75543 -16.43911 -16.34599 -15.86620 -15.44766 -15.26654 -14.79522 -14.35402 -14.12753 -13.87281 -13.64594 -13.50689 -13.18811 -12.83375 -12.60022 -12.49837 -12.16319 -11.97345 -11.70109 -11.57947 -11.03640 -11.02785 -10.97264 -10.75330 -9.81847 -9.45808 -9.05714 -9.02566 -8.91107 -8.61191 -8.24001 -6.50272 -6.20890 -3.91840 0.86139 0.89829 2.83958 2.98866 3.24214 3.24769 3.26181 3.29893 3.56147 3.94687 4.20756 4.27481 4.36672 4.58037 4.75506 4.83919 4.90914 5.07352 5.11633 5.14139 5.17084 5.30167 5.40692 5.55009 5.56619 5.70257 5.75888 5.82859 5.86135 5.91159 6.03259 6.11098 6.17794 6.48361 6.60006 7.47464 7.60366 8.35900 8.48249 9.24394 10.86510 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020268 B = 0.003958 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.163511 B = 7072.070745 C = 8122.060735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.541 3.459 12 O -0.512 6.512 13 N -0.621 5.621 14 C 0.112 3.888 15 C -0.099 4.099 16 C -0.039 4.039 17 C -0.131 4.131 18 C -0.091 4.091 19 C -0.158 4.158 20 C 0.106 3.894 21 F -0.135 7.135 22 C -0.126 4.126 23 C 0.152 3.848 24 H 0.269 0.731 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.102 0.898 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.294 -19.701 -3.549 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.303 4.303 11 C 0.329 3.671 12 O -0.386 6.386 13 N -0.357 5.357 14 C -0.011 4.011 15 C -0.136 4.136 16 C -0.039 4.039 17 C -0.149 4.149 18 C -0.109 4.109 19 C -0.177 4.177 20 C 0.086 3.914 21 F -0.113 7.113 22 C -0.128 4.128 23 C 0.028 3.972 24 H 0.079 0.921 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.154 0.846 34 H 0.120 0.880 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.331 -19.816 -3.512 23.095 hybrid contribution 2.378 1.432 -0.020 2.776 sum 13.709 -18.383 -3.532 23.203 Atomic orbital electron populations 1.70005 1.05952 1.27578 1.46788 1.24979 0.95017 0.98994 0.94479 0.86229 0.79250 0.81220 0.78849 1.19919 1.20795 1.19899 1.22825 0.94893 0.91606 1.59100 0.90950 1.85368 1.04810 0.96318 1.96716 1.23578 1.06657 0.95263 1.04845 1.20289 0.86061 0.86004 0.74709 1.90694 1.14924 1.85115 1.47866 1.48031 1.05643 1.06148 1.75865 1.21537 1.01984 0.81300 0.96301 1.20900 0.91560 1.01631 0.99540 1.19418 0.95916 0.93295 0.95284 1.21247 0.94848 1.00219 0.98631 1.20918 0.94328 0.96804 0.98892 1.21073 1.01211 0.96585 0.98784 1.17591 0.89981 0.87557 0.96283 1.91519 1.80083 1.56716 1.83031 1.19865 0.92692 0.98897 1.01324 1.20362 0.80230 0.99236 0.97371 0.92121 0.89103 0.89226 0.87986 0.91034 0.89417 0.89224 0.85307 0.84989 0.84616 0.87951 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 2 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 3 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -15.40 9.50 30.94 0.29 -15.10 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.18 4.58 36.00 0.16 -3.02 16 11 C 0.54 10.42 7.74 -10.99 -0.09 10.33 16 12 O -0.51 -11.61 15.35 5.56 0.09 -11.52 16 13 N -0.62 -9.08 2.93 -174.41 -0.51 -9.59 16 14 C 0.11 1.30 6.44 -3.75 -0.02 1.27 16 15 C -0.10 -0.94 5.86 -28.04 -0.16 -1.11 16 16 C -0.04 -0.40 5.76 -104.61 -0.60 -1.00 16 17 C -0.13 -1.09 9.59 -39.42 -0.38 -1.47 16 18 C -0.09 -0.71 10.04 -39.70 -0.40 -1.11 16 19 C -0.16 -1.43 10.03 -39.60 -0.40 -1.82 16 20 C 0.11 1.18 7.22 -39.30 -0.28 0.90 16 21 F -0.14 -1.64 16.61 2.25 0.04 -1.60 16 22 C -0.13 -1.46 5.82 -104.50 -0.61 -2.07 16 23 C 0.15 1.90 5.66 -5.06 -0.03 1.87 16 24 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.09 1.75 8.11 -51.92 -0.42 1.33 16 26 H 0.09 1.76 7.58 -51.91 -0.39 1.37 16 27 H 0.10 1.31 7.07 -51.93 -0.37 0.94 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.93 8.14 -51.92 -0.42 0.50 16 30 H 0.09 0.60 8.11 -51.93 -0.42 0.18 16 31 H 0.13 0.77 8.05 -52.49 -0.42 0.35 16 32 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.10 1.35 6.12 -51.93 -0.32 1.04 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 314.99 15.07 4.75 4.75 Total: -1.00 -34.10 314.99 -8.75 -42.85 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -4.00 Total: -1.78 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.61 Total: -10.27 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.22 Total: -35.14 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.10 -8.75 -42.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132564416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.900 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds