Wall clock time and date at job start Tue Mar 31 2020 06:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99924 * 2 1 4 4 H 1.48493 * 109.47466 * 239.99838 * 3 2 1 5 5 H 1.48506 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99752 * 3 2 1 7 7 C 1.38796 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00284 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99856 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00067 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47361 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00133 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00148 * 179.97438 * 11 10 9 14 14 C 1.47228 * 121.33879 * 180.02562 * 13 11 10 15 15 C 1.52787 * 107.90627 * 115.77793 * 14 13 11 16 16 C 1.50603 * 110.85673 * 47.46315 * 15 14 13 17 17 C 1.38995 * 117.60646 * 160.40627 * 16 15 14 18 18 C 1.37914 * 120.63661 * 179.69316 * 17 16 15 19 19 C 1.38228 * 119.85641 * 359.32177 * 18 17 16 20 20 C 1.38188 * 119.68613 * 0.67608 * 19 18 17 21 21 F 1.35101 * 119.77171 * 179.86249 * 20 19 18 22 22 C 1.37638 * 122.85833 * 339.97437 * 16 15 14 23 23 C 1.46681 * 121.33941 * 0.02562 * 13 11 10 24 24 H 0.97002 * 120.00417 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47103 * 59.99288 * 10 9 7 26 26 H 1.09008 * 109.46734 * 300.00227 * 10 9 7 27 27 H 1.09000 * 109.77484 * 356.17151 * 14 13 11 28 28 H 1.09005 * 109.81425 * 235.40024 * 14 13 11 29 29 H 1.09007 * 109.19797 * 287.11403 * 15 14 13 30 30 H 1.08994 * 109.20088 * 167.82078 * 15 14 13 31 31 H 1.08002 * 119.67677 * 359.40698 * 17 16 15 32 32 H 1.08003 * 120.06635 * 179.55657 * 18 17 16 33 33 H 1.07997 * 120.15897 * 180.45188 * 19 18 17 34 34 H 1.08999 * 109.43878 * 344.38753 * 23 13 11 35 35 H 1.09005 * 109.43751 * 104.25919 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 -0.0007 14 6 2.3603 -7.7336 -0.0019 15 6 2.8033 -8.3840 -1.3115 16 6 4.2584 -8.1061 -1.5829 17 6 4.9174 -8.9405 -2.4782 18 6 6.2486 -8.7389 -2.7773 19 6 6.9338 -7.6897 -2.1937 20 6 6.2823 -6.8580 -1.3030 21 9 6.9511 -5.8337 -0.7296 22 6 4.9432 -7.0683 -0.9926 23 6 4.2963 -6.1356 -0.0003 24 1 -0.4851 0.8400 -0.0004 25 1 3.1245 -3.7313 0.8905 26 1 3.1245 -3.7313 -0.8895 27 1 1.2725 -7.7455 0.0663 28 1 2.7887 -8.2746 0.8419 29 1 2.2037 -7.9861 -2.1302 30 1 2.6501 -9.4612 -1.2465 31 1 4.3831 -9.7572 -2.9405 32 1 6.7535 -9.3972 -3.4688 33 1 7.9743 -7.5230 -2.4300 34 1 4.5154 -5.1041 -0.2760 35 1 4.6910 -6.3357 0.9959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132564416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:11 Heat of formation + Delta-G solvation = -76.295947 kcal Electronic energy + Delta-G solvation = -20753.527813 eV Core-core repulsion = 17370.066832 eV Total energy + Delta-G solvation = -3383.460981 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.94503 -41.49642 -39.96809 -37.15185 -34.60927 -34.06458 -32.46997 -31.32608 -29.71204 -27.70730 -26.83708 -24.87105 -23.16610 -22.39232 -20.31879 -19.50469 -18.58442 -17.86213 -17.43760 -17.41990 -16.90143 -16.78567 -16.52526 -16.33999 -15.88647 -15.42882 -14.83165 -14.68171 -14.48968 -14.42627 -14.35092 -13.86620 -13.49706 -13.24661 -13.18700 -13.01813 -12.88734 -12.65350 -12.49300 -12.38163 -11.81227 -11.72224 -11.15091 -11.02492 -10.33228 -9.95683 -9.72391 -9.55242 -8.70617 -8.36643 -6.15682 0.14097 0.18990 1.20355 1.41976 1.42537 1.46428 1.53159 1.96930 2.25058 2.55591 2.97370 3.13794 3.23338 3.43347 3.56326 3.71324 3.89153 4.00146 4.12919 4.16178 4.24426 4.30006 4.37481 4.41731 4.50996 4.63431 4.76515 4.83407 5.03561 5.05898 5.15889 5.34600 5.38489 5.39210 5.48479 5.91138 6.14741 6.17753 7.01363 7.04366 8.72455 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020268 B = 0.003958 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.163511 B = 7072.070745 C = 8122.060735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 0.998 3.002 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.550 4.550 8 H 0.080 0.920 9 S -0.142 6.142 10 C -0.128 4.128 11 C 0.541 3.459 12 O -0.556 6.556 13 N -0.608 5.608 14 C 0.105 3.895 15 C -0.091 4.091 16 C -0.053 4.053 17 C -0.126 4.126 18 C -0.084 4.084 19 C -0.158 4.158 20 C 0.082 3.918 21 F -0.148 7.148 22 C -0.144 4.144 23 C 0.148 3.852 24 H 0.272 0.728 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.154 0.846 34 H 0.090 0.910 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.846 -21.290 -4.425 26.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.698 4.698 8 H 0.098 0.902 9 S 0.085 5.915 10 C -0.279 4.279 11 C 0.329 3.671 12 O -0.434 6.434 13 N -0.342 5.342 14 C -0.017 4.017 15 C -0.128 4.128 16 C -0.053 4.053 17 C -0.143 4.143 18 C -0.102 4.102 19 C -0.177 4.177 20 C 0.063 3.937 21 F -0.127 7.127 22 C -0.146 4.146 23 C 0.026 3.974 24 H 0.081 0.919 25 H 0.124 0.876 26 H 0.118 0.882 27 H 0.105 0.895 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.144 0.856 31 H 0.175 0.825 32 H 0.184 0.816 33 H 0.171 0.829 34 H 0.109 0.891 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.929 -21.451 -4.389 25.950 hybrid contribution 1.674 1.743 0.222 2.427 sum 15.603 -19.709 -4.167 25.480 Atomic orbital electron populations 1.70165 1.07920 1.28774 1.47739 1.26103 0.95967 1.03209 0.93558 0.85021 0.77867 0.75726 0.79498 1.18746 1.20100 1.18655 1.23158 0.95279 0.92054 1.59322 0.90172 1.85484 1.10000 0.98980 1.97022 1.23389 1.03718 0.94765 1.06036 1.19965 0.85881 0.86300 0.74996 1.90675 1.16630 1.85606 1.50454 1.47974 1.06184 1.06413 1.73634 1.21827 1.01339 0.79630 0.98881 1.20871 0.91061 1.03443 0.97447 1.19580 0.96122 0.93536 0.96053 1.21589 0.95206 1.00121 0.97433 1.21349 0.94151 0.96310 0.98389 1.21394 1.02169 0.96279 0.97826 1.17850 0.90131 0.88175 0.97554 1.91481 1.80293 1.57443 1.83448 1.19807 0.93144 0.99544 1.02114 1.20476 0.78715 0.99297 0.98952 0.91868 0.87588 0.88152 0.89534 0.88510 0.90689 0.85633 0.82469 0.81636 0.82872 0.89144 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.39 13.22 21.65 0.29 -56.11 16 2 C 0.02 0.96 5.49 84.86 0.47 1.43 16 3 Si 1.00 44.23 29.55 68.60 2.03 46.26 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.55 -32.18 9.50 67.95 0.65 -31.53 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.14 -8.09 20.57 -56.49 -1.16 -9.26 16 10 C -0.13 -5.44 4.58 71.23 0.33 -5.12 16 11 C 0.54 21.32 7.74 87.65 0.68 22.00 16 12 O -0.56 -26.24 15.35 -3.03 -0.05 -26.29 16 13 N -0.61 -17.62 2.93 -824.10 -2.42 -20.04 16 14 C 0.10 2.32 6.44 86.17 0.55 2.88 16 15 C -0.09 -1.53 5.86 29.75 0.17 -1.36 16 16 C -0.05 -0.95 5.76 -19.86 -0.11 -1.06 16 17 C -0.13 -1.60 9.59 22.37 0.21 -1.38 16 18 C -0.08 -0.96 10.04 22.19 0.22 -0.74 16 19 C -0.16 -2.42 10.03 22.26 0.22 -2.20 16 20 C 0.08 1.73 7.22 22.45 0.16 1.89 16 21 F -0.15 -3.52 16.61 44.97 0.75 -2.78 16 22 C -0.14 -3.14 5.82 -19.79 -0.12 -3.25 16 23 C 0.15 3.63 5.66 85.62 0.48 4.11 16 24 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 25 H 0.11 4.13 8.11 -2.40 -0.02 4.11 16 26 H 0.10 4.01 7.58 -2.39 -0.02 3.99 16 27 H 0.09 2.23 7.07 -2.39 -0.02 2.21 16 28 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.13 1.22 8.11 -2.39 -0.02 1.20 16 31 H 0.16 1.09 8.05 -2.91 -0.02 1.07 16 32 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 33 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 34 H 0.09 2.40 6.12 -2.39 -0.01 2.38 16 35 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -76.99 314.99 4.47 -72.53 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.11 Total: 10.01 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 3.92 Total: -14.33 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -2.13 Total: -76.14 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.05 Total: -26.29 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.75 Total: -2.78 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.26 kcal Total: -76.99 4.47 -72.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132564416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.767 kcal (2) G-P(sol) polarization free energy of solvation -76.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds