Wall clock time and date at job start Tue Mar 31 2020 06:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99649 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99944 * 3 2 1 7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.47228 * 121.33119 * 179.71255 * 13 11 10 15 15 C 1.53282 * 107.64997 * 115.79839 * 14 13 11 16 16 C 1.50615 * 110.82640 * 47.67144 * 15 14 13 17 17 C 1.38993 * 117.59108 * 160.36915 * 16 15 14 18 18 C 1.37864 * 120.61647 * 178.80420 * 17 16 15 19 19 C 1.38491 * 119.80186 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.17148 * 180.23658 * 19 18 17 21 21 C 1.38184 * 119.66129 * 0.26299 * 19 18 17 22 22 C 1.37689 * 122.84324 * 339.67421 * 16 15 14 23 23 C 1.46678 * 121.33676 * 359.97438 * 13 11 10 24 24 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 26 26 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 27 27 H 1.09000 * 109.77488 * 235.40479 * 14 13 11 28 28 H 1.09007 * 109.77489 * 356.19609 * 14 13 11 29 29 H 1.08988 * 109.31015 * 287.26173 * 15 14 13 30 30 H 1.08998 * 109.12416 * 167.95042 * 15 14 13 31 31 H 1.07998 * 119.68761 * 358.79638 * 17 16 15 32 32 H 1.08001 * 120.10234 * 180.02562 * 18 17 16 33 33 H 1.07992 * 119.75594 * 179.97438 * 21 19 18 34 34 H 1.09003 * 109.43548 * 344.45372 * 23 13 11 35 35 H 1.08998 * 109.43443 * 104.36825 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0003 14 6 2.3599 -7.7336 0.0060 15 6 2.8032 -8.3855 -1.3085 16 6 4.2588 -8.1088 -1.5792 17 6 4.9170 -8.9435 -2.4747 18 6 6.2431 -8.7320 -2.7869 19 6 6.9280 -7.6790 -2.2037 20 9 8.2263 -7.4620 -2.5079 21 6 6.2769 -6.8517 -1.3087 22 6 4.9429 -7.0683 -0.9918 23 6 4.2960 -6.1357 0.0008 24 1 -0.4850 0.8401 -0.0004 25 1 3.1243 -3.7315 -0.8895 26 1 3.1244 -3.7315 0.8905 27 1 2.7913 -8.2709 0.8506 28 1 1.2722 -7.7452 0.0776 29 1 2.2044 -7.9881 -2.1278 30 1 2.6494 -9.4626 -1.2427 31 1 4.3847 -9.7655 -2.9300 32 1 6.7464 -9.3855 -3.4841 33 1 6.8096 -6.0304 -0.8527 34 1 4.5150 -5.1040 -0.2747 35 1 4.6907 -6.3367 0.9967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151578709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:14 Heat of formation + Delta-G solvation = -57.102855 kcal Electronic energy + Delta-G solvation = -20488.923933 eV Core-core repulsion = 17106.295227 eV Total energy + Delta-G solvation = -3382.628706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.10897 -40.52620 -38.82272 -35.87944 -33.32011 -32.44388 -31.60804 -30.02089 -28.54970 -25.93055 -25.47199 -23.73249 -22.79404 -21.28200 -18.97715 -17.85449 -17.56234 -16.85599 -16.47191 -15.94862 -15.78064 -15.61983 -15.22857 -14.81593 -14.40744 -14.13574 -13.87663 -13.73808 -13.51650 -13.31041 -12.87761 -12.79551 -12.57037 -12.12339 -11.92072 -11.62560 -11.33168 -11.11771 -11.05807 -11.04723 -10.77472 -9.83909 -9.48954 -9.23882 -9.07230 -8.72593 -8.64915 -8.26017 -6.52494 -6.22996 -3.94095 0.85714 0.88852 2.82531 2.97280 3.22071 3.22822 3.24473 3.28256 3.53872 3.96188 4.18653 4.29127 4.38329 4.60287 4.68554 4.79061 4.91995 5.03062 5.12248 5.13444 5.18896 5.32146 5.38424 5.52112 5.56209 5.64413 5.75343 5.80526 5.83830 5.90932 5.98969 6.07173 6.22901 6.47456 6.59804 7.46332 7.57850 8.33387 8.46870 9.22231 10.84371 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019012 B = 0.003695 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.436083 B = 7575.233914 C = 8779.430957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.540 3.460 12 O -0.512 6.512 13 N -0.622 5.622 14 C 0.112 3.888 15 C -0.097 4.097 16 C -0.076 4.076 17 C -0.091 4.091 18 C -0.153 4.153 19 C 0.095 3.905 20 F -0.140 7.140 21 C -0.147 4.147 22 C -0.063 4.063 23 C 0.148 3.852 24 H 0.269 0.731 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.104 0.896 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.632 -18.859 -2.623 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.303 4.303 11 C 0.329 3.671 12 O -0.386 6.386 13 N -0.358 5.358 14 C -0.010 4.010 15 C -0.134 4.134 16 C -0.077 4.077 17 C -0.109 4.109 18 C -0.172 4.172 19 C 0.076 3.924 20 F -0.119 7.119 21 C -0.166 4.166 22 C -0.064 4.064 23 C 0.025 3.975 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.119 0.881 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.122 0.878 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.695 -19.008 -2.627 21.968 hybrid contribution 2.482 1.280 -0.190 2.799 sum 13.177 -17.728 -2.817 22.268 Atomic orbital electron populations 1.70007 1.05960 1.27600 1.46703 1.24984 0.95018 0.99005 0.94469 0.86231 0.79258 0.81236 0.78827 1.19924 1.20790 1.19903 1.22817 0.94862 0.91614 1.59189 0.90965 1.85401 1.04811 0.96316 1.96713 1.23577 1.06679 0.95293 1.04788 1.20291 0.86092 0.86006 0.74756 1.90699 1.14974 1.85112 1.47815 1.48049 1.05739 1.06169 1.75866 1.21637 1.01916 0.81216 0.96280 1.20940 0.91715 1.01449 0.99342 1.19613 0.96193 0.94855 0.97010 1.21047 0.93570 0.99301 0.96986 1.21070 0.95525 0.98352 1.02252 1.17535 0.78901 0.97276 0.98714 1.91504 1.33949 1.94458 1.91992 1.21016 0.94904 1.01008 0.99700 1.19684 0.92998 0.96004 0.97715 1.20502 0.80183 0.99284 0.97536 0.92101 0.89200 0.89124 0.91033 0.88074 0.89653 0.89543 0.84960 0.84768 0.84358 0.87847 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.22 55.49 0.73 -25.26 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -3.04 4.58 36.01 0.16 -2.88 16 11 C 0.54 10.01 7.74 -10.98 -0.09 9.92 16 12 O -0.51 -11.37 15.35 5.56 0.09 -11.29 16 13 N -0.62 -8.54 2.93 -174.10 -0.51 -9.05 16 14 C 0.11 1.25 6.47 -3.50 -0.02 1.23 16 15 C -0.10 -0.90 5.88 -27.78 -0.16 -1.06 16 16 C -0.08 -0.75 5.76 -104.58 -0.60 -1.36 16 17 C -0.09 -0.77 9.59 -39.44 -0.38 -1.15 16 18 C -0.15 -1.36 10.03 -39.62 -0.40 -1.75 16 19 C 0.09 0.97 7.30 -39.51 -0.29 0.69 16 20 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16 21 C -0.15 -1.46 9.60 -39.39 -0.38 -1.84 16 22 C -0.06 -0.66 5.82 -104.57 -0.61 -1.27 16 23 C 0.15 1.62 6.07 -5.06 -0.03 1.59 16 24 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.09 1.67 7.58 -51.91 -0.39 1.28 16 26 H 0.09 1.65 8.11 -51.92 -0.42 1.23 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.10 1.27 7.07 -51.92 -0.37 0.90 16 29 H 0.09 0.89 8.14 -51.94 -0.42 0.47 16 30 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 31 H 0.13 0.80 8.05 -52.49 -0.42 0.38 16 32 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.14 1.17 8.05 -52.49 -0.42 0.74 16 34 H 0.10 1.13 6.19 -51.93 -0.32 0.81 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 315.82 15.07 4.76 4.76 Total: -1.00 -33.78 315.82 -8.73 -42.50 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -4.01 Total: -1.86 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.59 Total: -10.70 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.22 Total: -34.32 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.78 -8.73 -42.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151578709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.602 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds