Wall clock time and date at job start Tue Mar 31 2020 06:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99649 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99944 * 3 2 1 7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.47228 * 121.33119 * 179.71255 * 13 11 10 15 15 C 1.53282 * 107.64997 * 115.79839 * 14 13 11 16 16 C 1.50615 * 110.82640 * 47.67144 * 15 14 13 17 17 C 1.38993 * 117.59108 * 160.36915 * 16 15 14 18 18 C 1.37864 * 120.61647 * 178.80420 * 17 16 15 19 19 C 1.38491 * 119.80186 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.17148 * 180.23658 * 19 18 17 21 21 C 1.38184 * 119.66129 * 0.26299 * 19 18 17 22 22 C 1.37689 * 122.84324 * 339.67421 * 16 15 14 23 23 C 1.46678 * 121.33676 * 359.97438 * 13 11 10 24 24 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 26 26 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 27 27 H 1.09000 * 109.77488 * 235.40479 * 14 13 11 28 28 H 1.09007 * 109.77489 * 356.19609 * 14 13 11 29 29 H 1.08988 * 109.31015 * 287.26173 * 15 14 13 30 30 H 1.08998 * 109.12416 * 167.95042 * 15 14 13 31 31 H 1.07998 * 119.68761 * 358.79638 * 17 16 15 32 32 H 1.08001 * 120.10234 * 180.02562 * 18 17 16 33 33 H 1.07992 * 119.75594 * 179.97438 * 21 19 18 34 34 H 1.09003 * 109.43548 * 344.45372 * 23 13 11 35 35 H 1.08998 * 109.43443 * 104.36825 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0003 14 6 2.3599 -7.7336 0.0060 15 6 2.8032 -8.3855 -1.3085 16 6 4.2588 -8.1088 -1.5792 17 6 4.9170 -8.9435 -2.4747 18 6 6.2431 -8.7320 -2.7869 19 6 6.9280 -7.6790 -2.2037 20 9 8.2263 -7.4620 -2.5079 21 6 6.2769 -6.8517 -1.3087 22 6 4.9429 -7.0683 -0.9918 23 6 4.2960 -6.1357 0.0008 24 1 -0.4850 0.8401 -0.0004 25 1 3.1243 -3.7315 -0.8895 26 1 3.1244 -3.7315 0.8905 27 1 2.7913 -8.2709 0.8506 28 1 1.2722 -7.7452 0.0776 29 1 2.2044 -7.9881 -2.1278 30 1 2.6494 -9.4626 -1.2427 31 1 4.3847 -9.7655 -2.9300 32 1 6.7464 -9.3855 -3.4841 33 1 6.8096 -6.0304 -0.8527 34 1 4.5150 -5.1040 -0.2747 35 1 4.6907 -6.3367 0.9967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151578709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:14 Heat of formation + Delta-G solvation = -77.162932 kcal Electronic energy + Delta-G solvation = -20489.793804 eV Core-core repulsion = 17106.295227 eV Total energy + Delta-G solvation = -3383.498577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.89514 -41.51087 -39.96437 -36.98608 -34.58388 -34.17232 -32.53166 -31.15493 -29.66650 -27.68476 -26.81084 -24.61649 -23.50909 -22.28577 -20.28919 -19.50636 -18.43548 -18.18356 -17.41108 -16.95780 -16.87758 -16.68802 -16.58131 -16.31175 -15.83984 -15.27940 -14.91654 -14.69246 -14.47887 -14.45212 -14.29108 -13.81690 -13.71570 -13.31159 -13.18367 -12.94979 -12.86407 -12.62477 -12.38090 -12.09100 -11.94794 -11.72017 -11.12773 -10.97012 -10.28414 -10.03320 -9.70960 -9.46958 -8.67450 -8.34452 -6.12873 0.11606 0.19357 1.24178 1.44083 1.44993 1.52869 1.55052 2.02757 2.27397 2.51426 2.99813 3.16956 3.26587 3.51543 3.63911 3.75776 3.89353 3.97965 4.15119 4.17393 4.27727 4.30501 4.43489 4.45882 4.56224 4.67930 4.80916 4.85217 4.96920 5.11253 5.12983 5.25175 5.41664 5.43788 5.49812 5.89033 6.19402 6.23095 7.06767 7.08178 8.74540 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019012 B = 0.003695 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.436083 B = 7575.233914 C = 8779.430957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.127 4.127 11 C 0.540 3.460 12 O -0.560 6.560 13 N -0.610 5.610 14 C 0.106 3.894 15 C -0.089 4.089 16 C -0.087 4.087 17 C -0.086 4.086 18 C -0.152 4.152 19 C 0.077 3.923 20 F -0.149 7.149 21 C -0.151 4.151 22 C -0.074 4.074 23 C 0.144 3.856 24 H 0.271 0.729 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.160 0.840 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.102 0.898 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.025 -19.921 -2.865 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.278 4.278 11 C 0.328 3.672 12 O -0.438 6.438 13 N -0.344 5.344 14 C -0.015 4.015 15 C -0.127 4.127 16 C -0.087 4.087 17 C -0.104 4.104 18 C -0.170 4.170 19 C 0.058 3.942 20 F -0.127 7.127 21 C -0.170 4.170 22 C -0.075 4.075 23 C 0.021 3.979 24 H 0.080 0.920 25 H 0.123 0.877 26 H 0.129 0.871 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.138 0.862 31 H 0.178 0.822 32 H 0.172 0.828 33 H 0.166 0.834 34 H 0.120 0.880 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.141 -20.115 -2.870 24.198 hybrid contribution 1.817 1.440 -0.129 2.321 sum 14.957 -18.676 -2.999 24.114 Atomic orbital electron populations 1.70175 1.07968 1.28686 1.47908 1.26104 0.95932 1.03239 0.93676 0.85027 0.77842 0.75772 0.79514 1.18744 1.20396 1.18557 1.23167 0.95347 0.91967 1.59046 0.89899 1.85564 1.10390 0.99166 1.97032 1.23397 1.03596 0.94435 1.06388 1.20010 0.85876 0.86390 0.74971 1.90682 1.16910 1.85653 1.50543 1.48001 1.06584 1.06186 1.73591 1.21892 1.01176 0.79819 0.98647 1.20901 0.91164 1.03161 0.97442 1.19784 0.96370 0.95089 0.97477 1.21320 0.93413 0.99501 0.96171 1.21358 0.95721 0.97958 1.02005 1.17781 0.78813 0.98158 0.99449 1.91483 1.34521 1.94600 1.92123 1.21110 0.94844 1.01348 0.99734 1.19632 0.93262 0.96362 0.98241 1.20728 0.78174 0.99655 0.99301 0.91973 0.87718 0.87122 0.88364 0.89866 0.91035 0.86246 0.82224 0.82796 0.83392 0.87979 0.87266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.83 13.22 21.65 0.29 -55.54 16 2 C 0.02 0.87 5.49 84.86 0.47 1.34 16 3 Si 1.00 43.34 29.55 68.60 2.03 45.37 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.55 -31.11 9.50 67.96 0.65 -30.47 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.24 20.57 -56.49 -1.16 -9.40 16 10 C -0.13 -5.04 4.58 71.24 0.33 -4.71 16 11 C 0.54 20.01 7.74 87.66 0.68 20.69 16 12 O -0.56 -25.66 15.35 -3.04 -0.05 -25.71 16 13 N -0.61 -15.95 2.93 -823.12 -2.41 -18.36 16 14 C 0.11 2.20 6.47 86.33 0.56 2.76 16 15 C -0.09 -1.44 5.88 29.92 0.18 -1.26 16 16 C -0.09 -1.48 5.76 -19.84 -0.11 -1.59 16 17 C -0.09 -1.18 9.59 22.36 0.21 -0.96 16 18 C -0.15 -2.26 10.03 22.24 0.22 -2.03 16 19 C 0.08 1.43 7.30 22.32 0.16 1.59 16 20 F -0.15 -3.06 17.27 44.97 0.78 -2.28 16 21 C -0.15 -2.71 9.60 22.39 0.22 -2.49 16 22 C -0.07 -1.37 5.82 -19.83 -0.12 -1.49 16 23 C 0.14 2.82 6.07 85.63 0.52 3.34 16 24 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 25 H 0.10 3.81 7.58 -2.39 -0.02 3.80 16 26 H 0.11 3.91 8.11 -2.40 -0.02 3.89 16 27 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 2.07 7.07 -2.38 -0.02 2.05 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.12 1.15 8.11 -2.39 -0.02 1.13 16 31 H 0.16 1.26 8.05 -2.91 -0.02 1.23 16 32 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 33 H 0.15 2.23 8.05 -2.91 -0.02 2.20 16 34 H 0.10 2.03 6.19 -2.39 -0.01 2.01 16 35 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -75.62 315.82 4.54 -71.08 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.11 Total: 10.14 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 3.96 Total: -15.30 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -2.12 Total: -73.90 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.05 Total: -25.71 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.40 kcal Total: -75.62 4.54 -71.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151578709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.086 kcal (2) G-P(sol) polarization free energy of solvation -75.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds