Wall clock time and date at job start Tue Mar 31 2020 06:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30680 * 1 3 3 Si 1.86794 * 120.00054 * 2 1 4 4 H 1.48502 * 109.47308 * 90.00134 * 3 2 1 5 5 H 1.48497 * 109.47147 * 210.00129 * 3 2 1 6 6 H 1.48503 * 109.47290 * 330.00510 * 3 2 1 7 7 C 1.40045 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99682 * 12.00534 * 7 2 1 9 9 C 1.46367 * 120.00397 * 192.00315 * 7 2 1 10 10 O 1.21689 * 119.99805 * 8.45500 * 9 7 2 11 11 N 1.34778 * 120.00643 * 188.46029 * 9 7 2 12 12 C 1.47149 * 120.97743 * 354.90995 * 11 9 7 13 13 C 1.53291 * 108.38414 * 129.44479 * 12 11 9 14 14 O 1.42968 * 109.22414 * 52.29814 * 13 12 11 15 15 C 1.42952 * 114.16789 * 297.42324 * 14 13 12 16 16 H 1.09000 * 109.51427 * 302.60126 * 15 14 13 17 17 C 1.50703 * 109.51449 * 182.49835 * 15 14 13 18 18 C 1.38239 * 120.00601 * 334.72973 * 17 15 14 19 19 C 1.38222 * 120.01208 * 179.74354 * 18 17 15 20 20 C 1.38257 * 120.02687 * 0.54970 * 19 18 17 21 21 C 1.38197 * 120.01347 * 359.69851 * 20 19 18 22 22 C 1.38327 * 120.00762 * 154.99796 * 17 15 14 23 23 Cl 1.73602 * 120.01438 * 0.02562 * 22 17 15 24 24 C 1.47149 * 120.98365 * 174.63218 * 11 9 7 25 25 H 0.97001 * 119.99707 * 174.94355 * 1 2 3 26 26 H 1.08998 * 109.68407 * 249.16820 * 12 11 9 27 27 H 1.08996 * 109.68413 * 9.72167 * 12 11 9 28 28 H 1.08997 * 109.51860 * 172.22573 * 13 12 11 29 29 H 1.09007 * 109.51350 * 292.37773 * 13 12 11 30 30 H 1.07994 * 119.98921 * 359.97438 * 18 17 15 31 31 H 1.08003 * 119.98262 * 180.29043 * 19 18 17 32 32 H 1.07999 * 119.99283 * 179.72337 * 20 19 18 33 33 H 1.07998 * 120.00510 * 180.02562 * 21 20 19 34 34 H 1.09001 * 109.68199 * 350.28226 * 24 11 9 35 35 H 1.08999 * 109.68320 * 110.83110 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 1.4001 5 1 3.5383 1.4401 -0.7000 6 1 1.4382 2.6527 -0.6999 7 6 2.0070 -1.2128 -0.0005 8 1 1.4847 -2.1378 -0.1955 9 6 3.4467 -1.2269 0.2631 10 8 4.0074 -0.2123 0.6331 11 7 4.1514 -2.3635 0.0959 12 6 3.4798 -3.6282 -0.2428 13 6 4.1907 -4.2441 -1.4532 14 8 5.5931 -4.3215 -1.1863 15 6 6.2221 -3.0532 -0.9880 16 1 6.0607 -2.4258 -1.8645 17 6 7.7009 -3.2522 -0.7768 18 6 8.1731 -4.4535 -0.2819 19 6 9.5299 -4.6380 -0.0932 20 6 10.4146 -3.6173 -0.3884 21 6 9.9433 -2.4141 -0.8784 22 6 8.5856 -2.2308 -1.0729 23 17 7.9927 -0.7193 -1.6872 24 6 5.6157 -2.3751 0.2408 25 1 -0.4850 -0.8368 -0.0740 26 1 3.5369 -4.3124 0.6038 27 1 2.4359 -3.4350 -0.4894 28 1 3.7990 -5.2448 -1.6353 29 1 4.0211 -3.6207 -2.3311 30 1 7.4821 -5.2492 -0.0463 31 1 9.8987 -5.5784 0.2891 32 1 11.4742 -3.7605 -0.2365 33 1 10.6345 -1.6171 -1.1093 34 1 5.9855 -1.3524 0.3143 35 1 5.8916 -2.9310 1.1369 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153759871.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:03 Heat of formation + Delta-G solvation = -67.533034 kcal Electronic energy + Delta-G solvation = -21632.824238 eV Core-core repulsion = 18235.326749 eV Total energy + Delta-G solvation = -3397.497489 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.06510 -38.77043 -37.15025 -36.42350 -33.74996 -33.10912 -32.76016 -30.83563 -29.52336 -27.51233 -25.85163 -23.87499 -22.92589 -22.15408 -20.84851 -19.29392 -17.68442 -17.14590 -16.42823 -16.05857 -15.67315 -15.20473 -14.75156 -14.59000 -14.41156 -14.12439 -13.86042 -13.52416 -13.39782 -12.96845 -12.53175 -12.29255 -12.16764 -11.70689 -11.61921 -11.50191 -11.32085 -11.07964 -10.68095 -10.61216 -10.33189 -10.13007 -9.77796 -9.21266 -9.01375 -8.93355 -8.76196 -7.98325 -7.56723 -7.04671 -4.96341 1.01144 1.14910 2.13294 3.45931 3.53850 3.61650 3.74063 3.94374 4.13650 4.25823 4.52286 4.67297 4.80370 4.83681 5.12993 5.21657 5.23427 5.33295 5.35870 5.47268 5.52819 5.66687 5.69844 5.81741 5.90969 6.07244 6.10235 6.21453 6.27701 6.29014 6.39018 6.66857 7.11531 7.30046 7.66656 7.70491 8.05919 8.78798 8.90402 9.98857 10.28387 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021492 B = 0.005224 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.525849 B = 5358.698421 C = 6276.217750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.065 3.935 3 Si 1.117 2.883 4 H -0.287 1.287 5 H -0.274 1.274 6 H -0.319 1.319 7 C -0.599 4.599 8 H 0.076 0.924 9 C 0.555 3.445 10 O -0.611 6.611 11 N -0.636 5.636 12 C 0.086 3.914 13 C 0.049 3.951 14 O -0.381 6.381 15 C 0.116 3.884 16 H 0.077 0.923 17 C -0.066 4.066 18 C -0.081 4.081 19 C -0.120 4.120 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.029 4.029 23 Cl -0.057 7.057 24 C 0.101 3.899 25 H 0.278 0.722 26 H 0.055 0.945 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.139 0.861 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.098 0.902 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.634 -10.207 -3.282 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.154 4.154 3 Si 0.948 3.052 4 H -0.214 1.214 5 H -0.200 1.200 6 H -0.250 1.250 7 C -0.635 4.635 8 H 0.094 0.906 9 C 0.366 3.634 10 O -0.503 6.503 11 N -0.371 5.371 12 C -0.038 4.038 13 C -0.028 4.028 14 O -0.300 6.300 15 C 0.057 3.943 16 H 0.095 0.905 17 C -0.067 4.067 18 C -0.100 4.100 19 C -0.138 4.138 20 C -0.129 4.129 21 C -0.131 4.131 22 C -0.056 4.056 23 Cl -0.028 7.028 24 C -0.024 4.024 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.156 0.844 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.116 0.884 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.692 -8.171 -3.058 18.834 hybrid contribution -0.162 -1.715 -0.102 1.725 sum 16.530 -9.886 -3.160 19.518 Atomic orbital electron populations 1.70640 1.07634 1.32150 1.35354 1.27077 0.95246 1.04802 0.88230 0.82672 0.73445 0.71099 0.77963 1.21387 1.20033 1.25043 1.22067 0.91515 0.96748 1.53142 0.90596 1.18445 0.88001 0.80249 0.76752 1.90233 1.72189 1.32465 1.55396 1.47861 1.04428 1.09316 1.75542 1.22155 0.99039 0.86249 0.96360 1.23046 0.80605 1.01576 0.97585 1.87798 1.21989 1.28045 1.92155 1.21187 0.87855 0.86001 0.99251 0.90522 1.19462 0.93953 0.93681 0.99643 1.21026 0.95586 0.96476 0.96870 1.21262 0.93217 0.99318 1.00034 1.21110 1.00021 0.92789 0.99017 1.20999 0.93058 0.98567 1.00497 1.20811 0.93736 0.88461 1.02572 1.98415 1.88408 1.30215 1.85801 1.21711 0.83147 1.02262 0.95242 0.91107 0.92673 0.87820 0.88236 0.92638 0.84357 0.85406 0.85236 0.84856 0.88407 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.70 13.65 55.55 0.76 -22.94 16 2 C 0.06 1.85 5.52 -17.36 -0.10 1.75 16 3 Si 1.12 29.51 26.41 -169.99 -4.49 25.02 16 4 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 5 H -0.27 -7.45 6.40 56.52 0.36 -7.09 16 6 H -0.32 -8.06 7.11 56.52 0.40 -7.66 16 7 C -0.60 -16.62 9.24 -35.64 -0.33 -16.95 16 8 H 0.08 2.03 5.95 -52.48 -0.31 1.72 16 9 C 0.56 14.93 7.38 -12.99 -0.10 14.84 16 10 O -0.61 -17.79 11.65 5.20 0.06 -17.73 16 11 N -0.64 -14.12 3.03 -174.20 -0.53 -14.65 16 12 C 0.09 1.56 6.56 -3.54 -0.02 1.54 16 13 C 0.05 0.75 6.98 37.31 0.26 1.01 16 14 O -0.38 -6.09 9.23 -35.23 -0.33 -6.41 16 15 C 0.12 1.94 2.49 -27.94 -0.07 1.87 16 16 H 0.08 1.39 7.12 -51.93 -0.37 1.02 16 17 C -0.07 -0.96 5.07 -104.59 -0.53 -1.49 16 18 C -0.08 -1.01 9.35 -39.59 -0.37 -1.38 16 19 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 20 C -0.11 -1.05 10.05 -39.59 -0.40 -1.45 16 21 C -0.11 -1.25 9.83 -39.55 -0.39 -1.63 16 22 C -0.03 -0.40 6.31 -39.50 -0.25 -0.65 16 23 Cl -0.06 -0.87 27.20 -51.86 -1.41 -2.28 16 24 C 0.10 1.97 5.87 -3.75 -0.02 1.95 16 25 H 0.28 7.58 8.72 -40.82 -0.36 7.22 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.10 1.97 5.41 -51.93 -0.28 1.69 16 28 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.14 1.65 7.36 -52.49 -0.39 1.27 16 31 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.10 2.11 6.92 -51.93 -0.36 1.75 16 35 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 LS Contribution 304.68 15.07 4.59 4.59 Total: -1.00 -31.97 304.68 -7.91 -39.88 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -3.86 Total: -3.29 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -2.71 Total: -2.18 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.23 Total: -37.58 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.26 Total: -24.14 kcal Atomic # 14 Polarization: 29.51 SS G_CDS: -4.49 Total: 25.02 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.41 Total: -2.28 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.97 -7.91 -39.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153759871.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.657 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds