Wall clock time and date at job start Tue Mar 31 2020 06:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30680 * 1 3 3 Si 1.86794 * 120.00054 * 2 1 4 4 H 1.48502 * 109.47308 * 90.00134 * 3 2 1 5 5 H 1.48497 * 109.47147 * 210.00129 * 3 2 1 6 6 H 1.48503 * 109.47290 * 330.00510 * 3 2 1 7 7 C 1.40045 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99682 * 12.00534 * 7 2 1 9 9 C 1.46367 * 120.00397 * 192.00315 * 7 2 1 10 10 O 1.21689 * 119.99805 * 8.45500 * 9 7 2 11 11 N 1.34778 * 120.00643 * 188.46029 * 9 7 2 12 12 C 1.47149 * 120.97743 * 354.90995 * 11 9 7 13 13 C 1.53291 * 108.38414 * 129.44479 * 12 11 9 14 14 O 1.42968 * 109.22414 * 52.29814 * 13 12 11 15 15 C 1.42952 * 114.16789 * 297.42324 * 14 13 12 16 16 H 1.09000 * 109.51427 * 302.60126 * 15 14 13 17 17 C 1.50703 * 109.51449 * 182.49835 * 15 14 13 18 18 C 1.38239 * 120.00601 * 334.72973 * 17 15 14 19 19 C 1.38222 * 120.01208 * 179.74354 * 18 17 15 20 20 C 1.38257 * 120.02687 * 0.54970 * 19 18 17 21 21 C 1.38197 * 120.01347 * 359.69851 * 20 19 18 22 22 C 1.38327 * 120.00762 * 154.99796 * 17 15 14 23 23 Cl 1.73602 * 120.01438 * 0.02562 * 22 17 15 24 24 C 1.47149 * 120.98365 * 174.63218 * 11 9 7 25 25 H 0.97001 * 119.99707 * 174.94355 * 1 2 3 26 26 H 1.08998 * 109.68407 * 249.16820 * 12 11 9 27 27 H 1.08996 * 109.68413 * 9.72167 * 12 11 9 28 28 H 1.08997 * 109.51860 * 172.22573 * 13 12 11 29 29 H 1.09007 * 109.51350 * 292.37773 * 13 12 11 30 30 H 1.07994 * 119.98921 * 359.97438 * 18 17 15 31 31 H 1.08003 * 119.98262 * 180.29043 * 19 18 17 32 32 H 1.07999 * 119.99283 * 179.72337 * 20 19 18 33 33 H 1.07998 * 120.00510 * 180.02562 * 21 20 19 34 34 H 1.09001 * 109.68199 * 350.28226 * 24 11 9 35 35 H 1.08999 * 109.68320 * 110.83110 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 1.4001 5 1 3.5383 1.4401 -0.7000 6 1 1.4382 2.6527 -0.6999 7 6 2.0070 -1.2128 -0.0005 8 1 1.4847 -2.1378 -0.1955 9 6 3.4467 -1.2269 0.2631 10 8 4.0074 -0.2123 0.6331 11 7 4.1514 -2.3635 0.0959 12 6 3.4798 -3.6282 -0.2428 13 6 4.1907 -4.2441 -1.4532 14 8 5.5931 -4.3215 -1.1863 15 6 6.2221 -3.0532 -0.9880 16 1 6.0607 -2.4258 -1.8645 17 6 7.7009 -3.2522 -0.7768 18 6 8.1731 -4.4535 -0.2819 19 6 9.5299 -4.6380 -0.0932 20 6 10.4146 -3.6173 -0.3884 21 6 9.9433 -2.4141 -0.8784 22 6 8.5856 -2.2308 -1.0729 23 17 7.9927 -0.7193 -1.6872 24 6 5.6157 -2.3751 0.2408 25 1 -0.4850 -0.8368 -0.0740 26 1 3.5369 -4.3124 0.6038 27 1 2.4359 -3.4350 -0.4894 28 1 3.7990 -5.2448 -1.6353 29 1 4.0211 -3.6207 -2.3311 30 1 7.4821 -5.2492 -0.0463 31 1 9.8987 -5.5784 0.2891 32 1 11.4742 -3.7605 -0.2365 33 1 10.6345 -1.6171 -1.1093 34 1 5.9855 -1.3524 0.3143 35 1 5.8916 -2.9310 1.1369 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153759871.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:03 Heat of formation + Delta-G solvation = -87.835706 kcal Electronic energy + Delta-G solvation = -21633.704628 eV Core-core repulsion = 18235.326749 eV Total energy + Delta-G solvation = -3398.377879 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.34803 -40.08248 -38.87184 -37.48017 -35.49302 -35.17196 -34.03662 -31.71263 -30.74948 -29.30811 -27.55547 -25.30473 -24.03201 -23.31315 -22.12041 -21.17393 -19.50970 -18.32318 -17.77857 -17.66605 -16.97442 -16.63643 -16.27622 -16.10356 -15.69017 -15.46520 -15.23749 -14.89487 -14.73185 -14.48939 -14.28205 -14.05252 -13.66825 -13.08801 -12.76957 -12.71494 -12.61686 -12.48214 -12.30465 -12.25149 -11.80572 -11.71196 -11.35099 -11.20421 -11.01380 -10.11481 -9.95637 -9.74080 -9.33506 -9.22322 -7.14688 0.09685 0.27347 1.11491 1.38540 1.48602 1.89679 2.09884 2.25797 2.43239 2.56635 2.66238 3.23490 3.63144 3.74471 3.86162 3.90949 4.07714 4.13039 4.24812 4.26668 4.39105 4.45479 4.52349 4.63980 4.67031 4.72777 4.90032 4.97705 5.24485 5.28467 5.35944 5.45509 5.53424 5.75782 5.85559 5.98806 6.00523 6.60818 6.92611 7.89798 8.08865 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021492 B = 0.005224 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.525849 B = 5358.698421 C = 6276.217750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.036 3.964 3 Si 1.145 2.855 4 H -0.293 1.293 5 H -0.292 1.292 6 H -0.300 1.300 7 C -0.612 4.612 8 H 0.081 0.919 9 C 0.548 3.452 10 O -0.640 6.640 11 N -0.640 5.640 12 C 0.081 3.919 13 C 0.054 3.946 14 O -0.374 6.374 15 C 0.129 3.871 16 H 0.057 0.943 17 C -0.092 4.092 18 C -0.088 4.088 19 C -0.111 4.111 20 C -0.098 4.098 21 C -0.115 4.115 22 C -0.047 4.047 23 Cl -0.084 7.084 24 C 0.102 3.898 25 H 0.280 0.720 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.143 0.857 29 H 0.046 0.954 30 H 0.141 0.859 31 H 0.163 0.837 32 H 0.169 0.831 33 H 0.151 0.849 34 H 0.073 0.927 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.868 -12.464 -3.217 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.180 4.180 3 Si 0.975 3.025 4 H -0.220 1.220 5 H -0.220 1.220 6 H -0.230 1.230 7 C -0.648 4.648 8 H 0.099 0.901 9 C 0.357 3.643 10 O -0.534 6.534 11 N -0.374 5.374 12 C -0.042 4.042 13 C -0.023 4.023 14 O -0.293 6.293 15 C 0.070 3.930 16 H 0.074 0.926 17 C -0.093 4.093 18 C -0.106 4.106 19 C -0.129 4.129 20 C -0.116 4.116 21 C -0.133 4.133 22 C -0.073 4.073 23 Cl -0.055 7.055 24 C -0.021 4.021 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.161 0.839 29 H 0.065 0.935 30 H 0.159 0.841 31 H 0.180 0.820 32 H 0.186 0.814 33 H 0.169 0.831 34 H 0.091 0.909 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.919 -10.471 -3.007 21.832 hybrid contribution -0.738 -1.148 -0.084 1.368 sum 18.181 -11.620 -3.091 21.798 Atomic orbital electron populations 1.70639 1.07711 1.32424 1.36424 1.27617 0.95635 1.06386 0.88349 0.82280 0.72291 0.70468 0.77443 1.22002 1.21988 1.23023 1.22244 0.92373 0.96907 1.53282 0.90096 1.18453 0.88129 0.81194 0.76551 1.90204 1.72752 1.34009 1.56478 1.47823 1.05747 1.09480 1.74319 1.22395 0.98546 0.84798 0.98464 1.23140 0.80081 1.03507 0.95529 1.87821 1.22185 1.27377 1.91868 1.20904 0.89625 0.85725 0.96728 0.92551 1.19371 0.92376 0.95240 1.02326 1.21169 0.97095 0.95544 0.96839 1.21669 0.92007 1.00764 0.98446 1.21590 1.01939 0.91435 0.96615 1.21322 0.92005 1.00019 1.00002 1.21019 0.94941 0.87431 1.03927 1.98402 1.88875 1.31929 1.86286 1.21799 0.81464 1.01473 0.97389 0.90880 0.90809 0.88944 0.83946 0.93547 0.84075 0.81958 0.81385 0.83102 0.90894 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.31 13.65 21.84 0.30 -48.01 16 2 C 0.04 2.06 5.52 85.30 0.47 2.53 16 3 Si 1.14 60.85 26.41 68.60 1.81 62.66 16 4 H -0.29 -15.69 7.11 99.48 0.71 -14.98 16 5 H -0.29 -16.31 6.40 99.48 0.64 -15.67 16 6 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 7 C -0.61 -34.44 9.24 24.83 0.23 -34.21 16 8 H 0.08 4.37 5.95 -2.91 -0.02 4.35 16 9 C 0.55 30.06 7.38 86.36 0.64 30.70 16 10 O -0.64 -38.29 11.65 -4.31 -0.05 -38.34 16 11 N -0.64 -28.61 3.03 -823.27 -2.49 -31.10 16 12 C 0.08 2.85 6.56 86.35 0.57 3.42 16 13 C 0.05 1.56 6.98 72.08 0.50 2.06 16 14 O -0.37 -11.33 9.23 -148.98 -1.38 -12.70 16 15 C 0.13 4.31 2.49 29.81 0.07 4.38 16 16 H 0.06 2.10 7.12 -2.39 -0.02 2.08 16 17 C -0.09 -2.57 5.07 -19.84 -0.10 -2.67 16 18 C -0.09 -1.96 9.35 22.27 0.21 -1.75 16 19 C -0.11 -1.73 10.05 22.27 0.22 -1.51 16 20 C -0.10 -1.42 10.05 22.26 0.22 -1.20 16 21 C -0.12 -2.26 9.83 22.29 0.22 -2.04 16 22 C -0.05 -1.25 6.31 22.32 0.14 -1.11 16 23 Cl -0.08 -2.60 27.20 -2.72 -0.07 -2.68 16 24 C 0.10 4.05 5.87 86.22 0.51 4.56 16 25 H 0.28 15.36 8.72 -92.71 -0.81 14.55 16 26 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.09 3.48 5.41 -2.39 -0.01 3.47 16 28 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.14 2.99 7.36 -2.91 -0.02 2.97 16 31 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 32 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 33 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 34 H 0.07 3.26 6.92 -2.39 -0.02 3.24 16 35 H 0.06 2.38 8.13 -2.39 -0.02 2.36 16 Total: -1.00 -70.27 304.68 3.03 -67.24 By element: Atomic # 1 Polarization: -1.24 SS G_CDS: 1.01 Total: -0.23 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 3.90 Total: 3.16 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -2.19 Total: -79.11 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -1.43 Total: -51.05 kcal Atomic # 14 Polarization: 60.85 SS G_CDS: 1.81 Total: 62.66 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -0.07 Total: -2.68 kcal Total: -70.27 3.03 -67.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153759871.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.596 kcal (2) G-P(sol) polarization free energy of solvation -70.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds