Wall clock time and date at job start Tue Mar 31 2020 06:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30680 * 1 3 3 Si 1.86795 * 119.99523 * 2 1 4 4 H 1.48500 * 109.47011 * 264.99832 * 3 2 1 5 5 H 1.48497 * 109.47491 * 24.99750 * 3 2 1 6 6 H 1.48505 * 109.47265 * 145.00005 * 3 2 1 7 7 C 1.40047 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99765 * 185.05789 * 7 2 1 9 9 C 1.46374 * 119.99830 * 5.05540 * 7 2 1 10 10 O 1.21687 * 120.00014 * 5.01706 * 9 7 2 11 11 N 1.34781 * 119.99729 * 185.01514 * 9 7 2 12 12 C 1.47153 * 120.97837 * 354.76087 * 11 9 7 13 13 C 1.53302 * 108.38155 * 230.56442 * 12 11 9 14 14 O 1.42961 * 109.22397 * 307.70065 * 13 12 11 15 15 C 1.42962 * 114.16852 * 62.58123 * 14 13 12 16 16 H 1.08994 * 109.51042 * 57.39048 * 15 14 13 17 17 C 1.50695 * 109.51701 * 177.49570 * 15 14 13 18 18 C 1.38244 * 120.00515 * 24.89902 * 17 15 14 19 19 C 1.38213 * 120.01157 * 180.02562 * 18 17 15 20 20 C 1.38266 * 120.02806 * 359.96116 * 19 18 17 21 21 C 1.38191 * 120.01206 * 0.02562 * 20 19 18 22 22 C 1.38328 * 120.01089 * 205.17417 * 17 15 14 23 23 Cl 1.73603 * 120.01172 * 0.02562 * 22 17 15 24 24 C 1.47163 * 120.94197 * 174.82649 * 11 9 7 25 25 H 0.96997 * 119.99963 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.68055 * 110.84561 * 12 11 9 27 27 H 1.08990 * 109.68621 * 350.28711 * 12 11 9 28 28 H 1.09006 * 109.51029 * 187.77567 * 13 12 11 29 29 H 1.08998 * 109.51285 * 67.62683 * 13 12 11 30 30 H 1.08002 * 119.99273 * 0.02562 * 18 17 15 31 31 H 1.08000 * 119.98607 * 179.97438 * 19 18 17 32 32 H 1.08004 * 119.98998 * 180.02562 * 20 19 18 33 33 H 1.08003 * 120.00218 * 180.02562 * 21 20 19 34 34 H 1.09003 * 109.72796 * 9.74054 * 24 11 9 35 35 H 1.08999 * 109.64616 * 249.17974 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5938 1.9854 -1.3947 5 1 1.3892 2.6809 0.5916 6 1 3.4814 1.4732 0.8031 7 6 2.0071 -1.2128 0.0005 8 1 3.0839 -1.2145 0.0830 9 6 1.2795 -2.4780 -0.1106 10 8 0.0767 -2.4740 -0.2951 11 7 1.9418 -3.6475 -0.0086 12 6 3.4090 -3.6800 0.0998 13 6 3.9491 -4.6650 -0.9433 14 8 3.2740 -5.9173 -0.8022 15 6 1.8660 -5.8534 -1.0413 16 1 1.6841 -5.4616 -2.0420 17 6 1.2725 -7.2337 -0.9256 18 6 1.9033 -8.1953 -0.1583 19 6 1.3594 -9.4615 -0.0525 20 6 0.1838 -9.7671 -0.7131 21 6 -0.4477 -8.8066 -1.4801 22 6 0.0996 -7.5406 -1.5915 23 17 -0.6890 -6.3360 -2.5614 24 6 1.2182 -4.9289 -0.0040 25 1 -0.4850 0.8400 -0.0004 26 1 3.6960 -4.0090 1.0985 27 1 3.8133 -2.6859 -0.0901 28 1 5.0186 -4.8085 -0.7891 29 1 3.7747 -4.2681 -1.9434 30 1 2.8213 -7.9571 0.3584 31 1 1.8528 -10.2126 0.5466 32 1 -0.2408 -10.7566 -0.6297 33 1 -1.3662 -9.0453 -1.9958 34 1 0.1727 -4.7621 -0.2631 35 1 1.2840 -5.3833 0.9846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153759980.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:05 Heat of formation + Delta-G solvation = -54.690696 kcal Electronic energy + Delta-G solvation = -21508.181455 eV Core-core repulsion = 18111.240852 eV Total energy + Delta-G solvation = -3396.940603 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.90453 -38.55422 -36.67355 -36.31029 -33.41996 -32.85815 -32.40435 -30.74334 -29.35914 -27.33754 -25.84011 -23.79996 -22.82127 -22.00493 -20.77185 -19.16334 -17.36317 -16.62915 -16.27600 -15.83134 -15.55667 -14.98959 -14.59456 -14.48606 -14.27095 -14.09485 -13.77281 -13.46515 -13.29403 -12.77757 -12.32378 -11.80208 -11.70547 -11.53719 -11.45547 -11.34086 -11.20408 -11.00465 -10.96302 -10.56349 -10.29730 -10.22692 -10.05745 -9.61979 -8.94260 -8.86520 -8.66292 -7.64282 -7.25989 -6.25940 -4.69934 1.10793 1.24080 2.24261 3.11298 3.17799 3.20198 3.56494 3.86647 4.02677 4.38365 4.50789 4.77502 4.90024 4.93301 5.24779 5.34330 5.36094 5.47579 5.54340 5.61972 5.64169 5.81189 5.90070 5.91816 6.07158 6.17494 6.24948 6.36411 6.41036 6.44004 6.56574 6.76125 7.39042 7.42838 7.48800 8.04188 8.26558 8.96731 9.35107 10.51611 10.69817 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024828 B = 0.004512 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.510176 B = 6204.502520 C = 6924.229620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.560 3.440 10 O -0.573 6.573 11 N -0.644 5.644 12 C 0.088 3.912 13 C 0.048 3.952 14 O -0.383 6.383 15 C 0.116 3.884 16 H 0.076 0.924 17 C -0.064 4.064 18 C -0.082 4.082 19 C -0.121 4.121 20 C -0.113 4.113 21 C -0.113 4.113 22 C -0.030 4.030 23 Cl -0.056 7.056 24 C 0.103 3.897 25 H 0.270 0.730 26 H 0.052 0.948 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.139 0.861 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.096 0.904 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.766 -15.757 -1.750 16.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.366 3.634 10 O -0.455 6.455 11 N -0.383 5.383 12 C -0.037 4.037 13 C -0.029 4.029 14 O -0.302 6.302 15 C 0.057 3.943 16 H 0.094 0.906 17 C -0.066 4.066 18 C -0.101 4.101 19 C -0.139 4.139 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.056 4.056 23 Cl -0.027 7.027 24 C -0.022 4.022 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.156 0.844 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.114 0.886 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.916 -15.661 -1.881 16.252 hybrid contribution 0.357 1.096 -0.118 1.158 sum 4.273 -14.565 -1.999 15.310 Atomic orbital electron populations 1.69998 1.07117 1.27497 1.34851 1.25722 0.94612 1.00316 0.92516 0.86391 0.80078 0.81283 0.79057 1.19592 1.20460 1.18902 1.20929 0.93904 0.89224 1.54069 0.90908 1.18292 0.86800 0.81940 0.76326 1.90600 1.15050 1.85899 1.53980 1.48325 1.04943 1.05137 1.79936 1.22094 0.83205 1.00767 0.97602 1.23064 0.96277 0.84416 0.99162 1.87778 1.19106 1.31450 1.91842 1.21291 0.81895 0.91196 0.99932 0.90640 1.19511 0.93970 0.95806 0.97278 1.21026 0.99794 0.92056 0.97180 1.21250 0.96144 0.96795 0.99720 1.21092 0.95752 0.99083 0.97174 1.20989 1.00584 0.91360 1.00259 1.20820 0.95321 0.91339 0.98161 1.98417 1.79370 1.55450 1.69476 1.21697 0.98792 0.85091 0.96595 0.91964 0.92999 0.88061 0.88490 0.92904 0.84368 0.85487 0.85328 0.84937 0.88561 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.78 11.87 55.55 0.66 -22.12 16 2 C 0.09 2.44 5.49 -17.36 -0.10 2.34 16 3 Si 0.91 19.80 29.56 -169.99 -5.03 14.78 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.54 -15.09 8.85 -35.63 -0.32 -15.41 16 8 H 0.07 1.82 5.77 -52.48 -0.30 1.51 16 9 C 0.56 15.97 7.62 -12.99 -0.10 15.87 16 10 O -0.57 -18.55 14.54 5.20 0.08 -18.48 16 11 N -0.64 -14.96 3.02 -173.92 -0.53 -15.48 16 12 C 0.09 1.63 6.51 -3.53 -0.02 1.61 16 13 C 0.05 0.75 6.98 37.31 0.26 1.01 16 14 O -0.38 -6.38 9.22 -35.23 -0.32 -6.71 16 15 C 0.12 2.05 2.51 -27.73 -0.07 1.98 16 16 H 0.08 1.44 7.11 -51.93 -0.37 1.07 16 17 C -0.06 -0.99 5.07 -104.59 -0.53 -1.52 16 18 C -0.08 -1.08 9.35 -39.59 -0.37 -1.45 16 19 C -0.12 -1.29 10.05 -39.58 -0.40 -1.68 16 20 C -0.11 -1.15 10.05 -39.59 -0.40 -1.54 16 21 C -0.11 -1.34 9.83 -39.55 -0.39 -1.73 16 22 C -0.03 -0.43 6.31 -39.50 -0.25 -0.68 16 23 Cl -0.06 -0.90 27.24 -51.86 -1.41 -2.32 16 24 C 0.10 2.14 5.93 -3.52 -0.02 2.12 16 25 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.10 1.90 5.50 -51.93 -0.29 1.61 16 28 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.14 1.75 7.35 -52.49 -0.39 1.36 16 31 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 34 H 0.10 2.24 6.91 -51.93 -0.36 1.88 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 309.00 15.07 4.66 4.66 Total: -1.00 -33.90 309.00 -8.39 -42.29 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.80 Total: 2.47 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -2.70 Total: 0.92 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.13 Total: -37.61 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.25 Total: -25.18 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.78 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.41 Total: -2.32 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.90 -8.39 -42.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153759980.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.400 kcal (2) G-P(sol) polarization free energy of solvation -33.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds