Wall clock time and date at job start Tue Mar 31 2020 06:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30680 * 1 3 3 Si 1.86795 * 119.99523 * 2 1 4 4 H 1.48500 * 109.47011 * 264.99832 * 3 2 1 5 5 H 1.48497 * 109.47491 * 24.99750 * 3 2 1 6 6 H 1.48505 * 109.47265 * 145.00005 * 3 2 1 7 7 C 1.40047 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99765 * 185.05789 * 7 2 1 9 9 C 1.46374 * 119.99830 * 5.05540 * 7 2 1 10 10 O 1.21687 * 120.00014 * 5.01706 * 9 7 2 11 11 N 1.34781 * 119.99729 * 185.01514 * 9 7 2 12 12 C 1.47153 * 120.97837 * 354.76087 * 11 9 7 13 13 C 1.53302 * 108.38155 * 230.56442 * 12 11 9 14 14 O 1.42961 * 109.22397 * 307.70065 * 13 12 11 15 15 C 1.42962 * 114.16852 * 62.58123 * 14 13 12 16 16 H 1.08994 * 109.51042 * 57.39048 * 15 14 13 17 17 C 1.50695 * 109.51701 * 177.49570 * 15 14 13 18 18 C 1.38244 * 120.00515 * 24.89902 * 17 15 14 19 19 C 1.38213 * 120.01157 * 180.02562 * 18 17 15 20 20 C 1.38266 * 120.02806 * 359.96116 * 19 18 17 21 21 C 1.38191 * 120.01206 * 0.02562 * 20 19 18 22 22 C 1.38328 * 120.01089 * 205.17417 * 17 15 14 23 23 Cl 1.73603 * 120.01172 * 0.02562 * 22 17 15 24 24 C 1.47163 * 120.94197 * 174.82649 * 11 9 7 25 25 H 0.96997 * 119.99963 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.68055 * 110.84561 * 12 11 9 27 27 H 1.08990 * 109.68621 * 350.28711 * 12 11 9 28 28 H 1.09006 * 109.51029 * 187.77567 * 13 12 11 29 29 H 1.08998 * 109.51285 * 67.62683 * 13 12 11 30 30 H 1.08002 * 119.99273 * 0.02562 * 18 17 15 31 31 H 1.08000 * 119.98607 * 179.97438 * 19 18 17 32 32 H 1.08004 * 119.98998 * 180.02562 * 20 19 18 33 33 H 1.08003 * 120.00218 * 180.02562 * 21 20 19 34 34 H 1.09003 * 109.72796 * 9.74054 * 24 11 9 35 35 H 1.08999 * 109.64616 * 249.17974 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5938 1.9854 -1.3947 5 1 1.3892 2.6809 0.5916 6 1 3.4814 1.4732 0.8031 7 6 2.0071 -1.2128 0.0005 8 1 3.0839 -1.2145 0.0830 9 6 1.2795 -2.4780 -0.1106 10 8 0.0767 -2.4740 -0.2951 11 7 1.9418 -3.6475 -0.0086 12 6 3.4090 -3.6800 0.0998 13 6 3.9491 -4.6650 -0.9433 14 8 3.2740 -5.9173 -0.8022 15 6 1.8660 -5.8534 -1.0413 16 1 1.6841 -5.4616 -2.0420 17 6 1.2725 -7.2337 -0.9256 18 6 1.9033 -8.1953 -0.1583 19 6 1.3594 -9.4615 -0.0525 20 6 0.1838 -9.7671 -0.7131 21 6 -0.4477 -8.8066 -1.4801 22 6 0.0996 -7.5406 -1.5915 23 17 -0.6890 -6.3360 -2.5614 24 6 1.2182 -4.9289 -0.0040 25 1 -0.4850 0.8400 -0.0004 26 1 3.6960 -4.0090 1.0985 27 1 3.8133 -2.6859 -0.0901 28 1 5.0186 -4.8085 -0.7891 29 1 3.7747 -4.2681 -1.9434 30 1 2.8213 -7.9571 0.3584 31 1 1.8528 -10.2126 0.5466 32 1 -0.2408 -10.7566 -0.6297 33 1 -1.3662 -9.0453 -1.9958 34 1 0.1727 -4.7621 -0.2631 35 1 1.2840 -5.3833 0.9846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153759980.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:05 Heat of formation + Delta-G solvation = -77.103773 kcal Electronic energy + Delta-G solvation = -21509.153359 eV Core-core repulsion = 18111.240852 eV Total energy + Delta-G solvation = -3397.912507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.20448 -39.89891 -38.52724 -37.46022 -35.26438 -34.66880 -33.94199 -31.69885 -30.66257 -29.21662 -27.56211 -25.27762 -23.97897 -23.25602 -22.11681 -21.00474 -18.78621 -18.12950 -17.82417 -17.53346 -16.71552 -16.51789 -16.29838 -15.83158 -15.68174 -15.37995 -15.18837 -14.74347 -14.55987 -14.37394 -13.73781 -13.64388 -13.38406 -13.10239 -12.76457 -12.69160 -12.59820 -12.48533 -12.26567 -12.15814 -12.02695 -11.73881 -11.55346 -11.10464 -10.92407 -9.97059 -9.82354 -9.70591 -9.10408 -8.33587 -6.87794 0.11547 0.28700 1.13760 1.39106 1.41175 1.55593 2.20291 2.41982 2.47724 2.66423 2.72386 3.54335 3.68805 3.81267 3.90750 3.95859 4.14566 4.18797 4.34156 4.37776 4.41575 4.48535 4.61917 4.67095 4.74670 4.79961 4.98204 5.02589 5.26920 5.33951 5.38634 5.46345 5.65030 5.87213 6.03397 6.08379 6.26489 6.84030 7.33648 8.40711 8.63084 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.024828 B = 0.004512 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.510176 B = 6204.502520 C = 6924.229620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.244 1.244 7 C -0.568 4.568 8 H 0.098 0.902 9 C 0.541 3.459 10 O -0.629 6.629 11 N -0.650 5.650 12 C 0.082 3.918 13 C 0.052 3.948 14 O -0.375 6.375 15 C 0.132 3.868 16 H 0.053 0.947 17 C -0.092 4.092 18 C -0.089 4.089 19 C -0.111 4.111 20 C -0.099 4.099 21 C -0.116 4.116 22 C -0.049 4.049 23 Cl -0.085 7.085 24 C 0.105 3.895 25 H 0.275 0.725 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.145 0.855 29 H 0.044 0.956 30 H 0.142 0.858 31 H 0.164 0.836 32 H 0.170 0.830 33 H 0.151 0.849 34 H 0.062 0.938 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.280 -17.534 -1.044 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.167 1.167 7 C -0.604 4.604 8 H 0.116 0.884 9 C 0.347 3.653 10 O -0.516 6.516 11 N -0.388 5.388 12 C -0.041 4.041 13 C -0.025 4.025 14 O -0.294 6.294 15 C 0.073 3.927 16 H 0.070 0.930 17 C -0.093 4.093 18 C -0.107 4.107 19 C -0.128 4.128 20 C -0.116 4.116 21 C -0.135 4.135 22 C -0.075 4.075 23 Cl -0.056 7.056 24 C -0.019 4.019 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.162 0.838 29 H 0.062 0.938 30 H 0.160 0.840 31 H 0.182 0.818 32 H 0.187 0.813 33 H 0.168 0.832 34 H 0.080 0.920 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.490 -17.495 -1.169 18.696 hybrid contribution -0.424 1.474 -0.286 1.560 sum 6.066 -16.021 -1.455 17.192 Atomic orbital electron populations 1.70184 1.09704 1.29061 1.36227 1.27027 0.95479 1.05044 0.91082 0.85030 0.78802 0.74838 0.79647 1.18653 1.19988 1.16698 1.21475 0.95267 0.89535 1.54103 0.88431 1.18756 0.86483 0.83914 0.76107 1.90547 1.17380 1.87230 1.56421 1.48215 1.07120 1.04671 1.78784 1.22368 0.80216 1.01842 0.99662 1.23198 0.98394 0.83285 0.97603 1.87797 1.18309 1.31775 1.91549 1.20930 0.82279 0.92164 0.97285 0.92956 1.19432 0.95046 0.95110 0.99741 1.21180 0.99993 0.92738 0.96800 1.21676 0.95930 0.96223 0.99002 1.21590 0.94960 1.00119 0.94968 1.21318 1.01261 0.90406 1.00468 1.21050 0.95651 0.91953 0.98888 1.98404 1.79883 1.56977 1.70377 1.21716 0.97277 0.84863 0.98026 0.91560 0.91279 0.88275 0.83790 0.93767 0.83987 0.81807 0.81290 0.83174 0.91965 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.90 11.87 21.84 0.26 -50.64 16 2 C 0.03 1.61 5.49 85.30 0.47 2.08 16 3 Si 1.00 40.65 29.56 68.60 2.03 42.68 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.24 -9.04 7.11 99.48 0.71 -8.33 16 7 C -0.57 -32.08 8.85 24.83 0.22 -31.86 16 8 H 0.10 4.82 5.77 -2.91 -0.02 4.81 16 9 C 0.54 32.31 7.62 86.36 0.66 32.97 16 10 O -0.63 -43.46 14.54 -4.31 -0.06 -43.53 16 11 N -0.65 -31.24 3.02 -822.38 -2.48 -33.72 16 12 C 0.08 2.99 6.51 86.36 0.56 3.55 16 13 C 0.05 1.55 6.98 72.08 0.50 2.05 16 14 O -0.38 -12.12 9.22 -148.98 -1.37 -13.49 16 15 C 0.13 4.81 2.51 29.95 0.08 4.89 16 16 H 0.05 2.12 7.11 -2.39 -0.02 2.11 16 17 C -0.09 -2.82 5.07 -19.84 -0.10 -2.93 16 18 C -0.09 -2.16 9.35 22.27 0.21 -1.95 16 19 C -0.11 -1.91 10.05 22.27 0.22 -1.69 16 20 C -0.10 -1.61 10.05 22.27 0.22 -1.39 16 21 C -0.12 -2.54 9.83 22.29 0.22 -2.32 16 22 C -0.05 -1.44 6.31 22.32 0.14 -1.30 16 23 Cl -0.09 -2.92 27.24 -2.72 -0.07 -3.00 16 24 C 0.11 4.61 5.93 86.35 0.51 5.12 16 25 H 0.27 15.41 8.29 -92.71 -0.77 14.64 16 26 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.10 3.62 5.50 -2.39 -0.01 3.61 16 28 H 0.14 2.97 8.14 -2.38 -0.02 2.95 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.14 3.27 7.35 -2.91 -0.02 3.25 16 31 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.06 3.14 6.91 -2.39 -0.02 3.13 16 35 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -79.67 309.00 3.33 -76.35 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 1.12 Total: 18.12 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 3.91 Total: 7.23 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -2.22 Total: -84.36 kcal Atomic # 8 Polarization: -55.58 SS G_CDS: -1.44 Total: -57.02 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Atomic # 17 Polarization: -2.92 SS G_CDS: -0.07 Total: -3.00 kcal Total: -79.67 3.33 -76.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153759980.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.756 kcal (2) G-P(sol) polarization free energy of solvation -79.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds