Wall clock time and date at job start Tue Mar 31 2020 07:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99787 * 2 1 4 4 H 1.48499 * 109.46808 * 269.99419 * 3 2 1 5 5 H 1.48494 * 109.47215 * 29.99746 * 3 2 1 6 6 H 1.48502 * 109.46844 * 149.99853 * 3 2 1 7 7 C 1.38801 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99722 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99817 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99852 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47305 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99795 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00458 * 180.02562 * 11 10 9 14 14 C 1.46493 * 120.00095 * 184.98803 * 13 11 10 15 15 C 1.50705 * 115.55077 * 294.72251 * 14 13 11 16 16 C 1.38267 * 119.98889 * 278.14406 * 15 14 13 17 17 C 1.38219 * 120.04927 * 179.72064 * 16 15 14 18 18 C 1.38224 * 120.02927 * 0.29739 * 17 16 15 19 19 C 1.38445 * 119.96878 * 359.97438 * 18 17 16 20 20 F 1.35101 * 120.02096 * 180.02562 * 19 18 17 21 21 C 1.38177 * 119.98205 * 98.41750 * 15 14 13 22 22 C 1.53004 * 117.50445 * 80.39918 * 14 13 11 23 23 C 1.53005 * 117.50027 * 149.06161 * 14 13 11 24 24 H 0.96995 * 120.00126 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47313 * 60.00154 * 10 9 7 26 26 H 1.09002 * 109.47263 * 300.00132 * 10 9 7 27 27 H 0.97008 * 119.99833 * 4.98134 * 13 11 10 28 28 H 1.07994 * 119.97287 * 359.97438 * 16 15 14 29 29 H 1.07996 * 119.98782 * 180.27177 * 17 16 15 30 30 H 1.07996 * 120.01580 * 180.02562 * 18 17 16 31 31 H 1.08001 * 120.01781 * 359.97438 * 21 15 14 32 32 H 1.08990 * 117.49954 * 215.00198 * 22 14 13 33 33 H 1.08998 * 117.49401 * 0.02562 * 22 14 13 34 34 H 1.09003 * 117.49665 * 359.97227 * 23 14 13 35 35 H 1.08995 * 117.50010 * 144.97029 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 -0.0010 13 7 2.8442 -6.3431 0.0003 14 6 2.3342 -7.7119 -0.1106 15 6 1.4925 -8.1877 1.0454 16 6 2.0999 -8.6622 2.1933 17 6 1.3291 -9.0934 3.2565 18 6 -0.0500 -9.0565 3.1710 19 6 -0.6592 -8.5869 2.0199 20 9 -2.0070 -8.5499 1.9354 21 6 0.1141 -8.1547 0.9555 22 6 1.9674 -8.2183 -1.5070 23 6 3.2240 -8.7430 -0.8079 24 1 -0.4850 0.8400 -0.0004 25 1 3.1245 -3.7313 0.8905 26 1 3.1245 -3.7313 -0.8894 27 1 3.7985 -6.1855 0.0740 28 1 3.1773 -8.6920 2.2608 29 1 1.8046 -9.4597 4.1544 30 1 -0.6520 -9.3931 4.0020 31 1 -0.3602 -7.7878 0.0572 32 1 1.1173 -8.8954 -1.5896 33 1 2.1059 -7.5330 -2.3433 34 1 4.1887 -8.4027 -1.1844 35 1 3.2008 -9.7652 -0.4303 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156530459.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:59 Heat of formation + Delta-G solvation = -29.448633 kcal Electronic energy + Delta-G solvation = -20531.098081 eV Core-core repulsion = 17149.668551 eV Total energy + Delta-G solvation = -3381.429529 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -48.80193 -40.21983 -38.51672 -36.81601 -32.76443 -32.42982 -30.94321 -30.40728 -28.95517 -25.49913 -23.90348 -23.28471 -22.06757 -21.26574 -19.74003 -17.86459 -17.65976 -16.39835 -16.23941 -16.05217 -16.02013 -15.48230 -15.25033 -14.80866 -14.51567 -14.16934 -13.90220 -13.40696 -13.22264 -13.01069 -12.56758 -12.39173 -12.09242 -11.88866 -11.71258 -11.31478 -11.06983 -11.02790 -10.93834 -10.77473 -10.48369 -9.81987 -9.51570 -9.07513 -8.96527 -8.89066 -8.70438 -8.23953 -6.50217 -6.21986 -3.92588 1.05819 1.20269 2.92007 3.05555 3.21972 3.25707 3.30042 3.43927 3.54308 3.75042 4.15017 4.20078 4.42053 4.62598 4.75603 4.85569 4.96799 5.06047 5.13228 5.21507 5.32269 5.37997 5.39757 5.64894 5.71656 5.81561 5.87547 5.92922 5.99764 6.12028 6.12980 6.21044 6.44010 6.63024 6.85955 7.59006 7.67425 8.34675 8.61254 9.23309 10.85425 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.003744 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.636243 B = 7477.334509 C = 8162.347102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.152 4.152 11 C 0.534 3.466 12 O -0.503 6.503 13 N -0.706 5.706 14 C 0.141 3.859 15 C -0.030 4.030 16 C -0.114 4.114 17 C -0.100 4.100 18 C -0.152 4.152 19 C 0.094 3.906 20 F -0.140 7.140 21 C -0.106 4.106 22 C -0.167 4.167 23 C -0.163 4.163 24 H 0.268 0.732 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.401 0.599 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.141 0.859 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.557 -20.575 2.307 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.303 4.303 11 C 0.320 3.680 12 O -0.375 6.375 13 N -0.360 5.360 14 C 0.053 3.947 15 C -0.031 4.031 16 C -0.133 4.133 17 C -0.118 4.118 18 C -0.171 4.171 19 C 0.074 3.926 20 F -0.118 7.118 21 C -0.125 4.125 22 C -0.205 4.205 23 C -0.200 4.200 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.236 0.764 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.159 0.841 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.331 -20.758 2.284 21.553 hybrid contribution 2.183 1.532 0.075 2.668 sum 7.514 -19.226 2.360 20.777 Atomic orbital electron populations 1.70016 1.05959 1.27472 1.46824 1.24987 0.95009 0.99009 0.94513 0.86174 0.79421 0.81596 0.78352 1.20262 1.20735 1.19693 1.22869 0.94901 0.91696 1.59009 0.90958 1.85418 1.04731 0.96228 1.96707 1.23532 1.06669 0.95247 1.04863 1.20359 0.86647 0.85965 0.75020 1.90694 1.15188 1.85296 1.46352 1.45430 1.09939 1.03133 1.77536 1.18828 1.00767 0.83302 0.91835 1.18846 0.92205 0.97768 0.94323 1.20995 1.00195 0.99323 0.92748 1.20905 0.92681 0.99537 0.98686 1.21156 0.95843 1.02803 0.97292 1.17697 0.77105 1.01999 0.95752 1.91504 1.29261 1.94388 1.96657 1.21096 0.93586 0.98637 0.99223 1.23404 0.98685 1.03088 0.95309 1.23358 0.95874 0.98191 1.02582 0.92169 0.89329 0.89234 0.76394 0.85567 0.85096 0.84938 0.84076 0.87946 0.87883 0.87870 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 11 C 0.53 9.78 7.74 -10.99 -0.09 9.69 16 12 O -0.50 -11.04 14.01 5.56 0.08 -10.97 16 13 N -0.71 -9.29 5.44 -48.68 -0.27 -9.56 16 14 C 0.14 1.66 1.84 -132.97 -0.24 1.41 16 15 C -0.03 -0.38 4.81 -104.63 -0.50 -0.89 16 16 C -0.11 -1.23 9.69 -39.58 -0.38 -1.61 16 17 C -0.10 -1.01 10.04 -39.59 -0.40 -1.41 16 18 C -0.15 -1.76 10.03 -39.51 -0.40 -2.15 16 19 C 0.09 1.33 7.30 -39.42 -0.29 1.04 16 20 F -0.14 -2.13 17.27 2.25 0.04 -2.09 16 21 C -0.11 -1.56 8.16 -39.51 -0.32 -1.89 16 22 C -0.17 -1.78 9.81 -26.69 -0.26 -2.05 16 23 C -0.16 -1.33 10.12 -26.69 -0.27 -1.60 16 24 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 26 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 27 H 0.40 4.01 8.83 -40.82 -0.36 3.65 16 28 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 29 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.14 2.26 7.61 -52.49 -0.40 1.86 16 32 H 0.10 1.04 8.04 -51.93 -0.42 0.62 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 327.55 15.07 4.94 4.94 Total: -1.00 -34.39 327.55 -8.55 -42.94 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.10 Total: 2.87 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -2.73 Total: -15.24 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.47 Total: -35.08 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.39 -8.55 -42.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156530459.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.487 kcal (2) G-P(sol) polarization free energy of solvation -34.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds