Wall clock time and date at job start Tue Mar 31 2020 07:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99787 * 2 1 4 4 H 1.48499 * 109.46808 * 269.99419 * 3 2 1 5 5 H 1.48494 * 109.47215 * 29.99746 * 3 2 1 6 6 H 1.48502 * 109.46844 * 149.99853 * 3 2 1 7 7 C 1.38801 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99722 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99817 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99852 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47305 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99795 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00458 * 180.02562 * 11 10 9 14 14 C 1.46493 * 120.00095 * 184.98803 * 13 11 10 15 15 C 1.50705 * 115.55077 * 294.72251 * 14 13 11 16 16 C 1.38267 * 119.98889 * 278.14406 * 15 14 13 17 17 C 1.38219 * 120.04927 * 179.72064 * 16 15 14 18 18 C 1.38224 * 120.02927 * 0.29739 * 17 16 15 19 19 C 1.38445 * 119.96878 * 359.97438 * 18 17 16 20 20 F 1.35101 * 120.02096 * 180.02562 * 19 18 17 21 21 C 1.38177 * 119.98205 * 98.41750 * 15 14 13 22 22 C 1.53004 * 117.50445 * 80.39918 * 14 13 11 23 23 C 1.53005 * 117.50027 * 149.06161 * 14 13 11 24 24 H 0.96995 * 120.00126 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47313 * 60.00154 * 10 9 7 26 26 H 1.09002 * 109.47263 * 300.00132 * 10 9 7 27 27 H 0.97008 * 119.99833 * 4.98134 * 13 11 10 28 28 H 1.07994 * 119.97287 * 359.97438 * 16 15 14 29 29 H 1.07996 * 119.98782 * 180.27177 * 17 16 15 30 30 H 1.07996 * 120.01580 * 180.02562 * 18 17 16 31 31 H 1.08001 * 120.01781 * 359.97438 * 21 15 14 32 32 H 1.08990 * 117.49954 * 215.00198 * 22 14 13 33 33 H 1.08998 * 117.49401 * 0.02562 * 22 14 13 34 34 H 1.09003 * 117.49665 * 359.97227 * 23 14 13 35 35 H 1.08995 * 117.50010 * 144.97029 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 -0.0010 13 7 2.8442 -6.3431 0.0003 14 6 2.3342 -7.7119 -0.1106 15 6 1.4925 -8.1877 1.0454 16 6 2.0999 -8.6622 2.1933 17 6 1.3291 -9.0934 3.2565 18 6 -0.0500 -9.0565 3.1710 19 6 -0.6592 -8.5869 2.0199 20 9 -2.0070 -8.5499 1.9354 21 6 0.1141 -8.1547 0.9555 22 6 1.9674 -8.2183 -1.5070 23 6 3.2240 -8.7430 -0.8079 24 1 -0.4850 0.8400 -0.0004 25 1 3.1245 -3.7313 0.8905 26 1 3.1245 -3.7313 -0.8894 27 1 3.7985 -6.1855 0.0740 28 1 3.1773 -8.6920 2.2608 29 1 1.8046 -9.4597 4.1544 30 1 -0.6520 -9.3931 4.0020 31 1 -0.3602 -7.7878 0.0572 32 1 1.1173 -8.8954 -1.5896 33 1 2.1059 -7.5330 -2.3433 34 1 4.1887 -8.4027 -1.1844 35 1 3.2008 -9.7652 -0.4303 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156530459.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:58 Heat of formation + Delta-G solvation = -51.738722 kcal Electronic energy + Delta-G solvation = -20532.064652 eV Core-core repulsion = 17149.668551 eV Total energy + Delta-G solvation = -3382.396100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.91588 -41.28585 -39.70198 -37.83044 -34.59610 -34.01985 -31.84426 -31.32867 -30.48339 -27.67851 -24.85572 -24.12556 -22.97386 -22.42344 -20.87418 -19.84322 -18.71117 -17.76443 -17.20801 -17.15574 -17.01333 -16.88718 -16.60646 -16.47575 -16.04631 -15.56700 -14.88082 -14.78130 -14.54640 -14.24590 -13.96000 -13.63127 -13.25293 -13.17158 -12.90018 -12.79368 -12.62009 -12.43703 -12.21624 -11.88048 -11.74009 -11.40815 -11.14969 -10.89674 -10.27522 -10.08275 -9.89555 -9.66692 -8.67243 -8.35411 -6.13513 0.13107 0.25926 1.26095 1.41854 1.46250 1.56510 1.63583 2.15675 2.27160 2.58332 2.79945 2.98917 3.21320 3.32572 3.51249 3.78517 3.92028 3.97846 4.05213 4.14326 4.28208 4.32377 4.47739 4.49384 4.53137 4.72627 4.90248 4.99476 5.10369 5.17210 5.19477 5.33404 5.40752 5.50131 5.55936 5.94157 6.18817 6.52893 7.05897 7.29972 8.73839 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.003744 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.636243 B = 7477.334509 C = 8162.347102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.128 4.128 11 C 0.534 3.466 12 O -0.548 6.548 13 N -0.680 5.680 14 C 0.113 3.887 15 C -0.041 4.041 16 C -0.108 4.108 17 C -0.091 4.091 18 C -0.152 4.152 19 C 0.060 3.940 20 F -0.157 7.157 21 C -0.131 4.131 22 C -0.185 4.185 23 C -0.115 4.115 24 H 0.271 0.729 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.420 0.580 28 H 0.160 0.840 29 H 0.171 0.829 30 H 0.153 0.847 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.528 -21.648 3.333 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.279 4.279 11 C 0.320 3.680 12 O -0.424 6.424 13 N -0.334 5.334 14 C 0.026 3.974 15 C -0.042 4.042 16 C -0.126 4.126 17 C -0.109 4.109 18 C -0.171 4.171 19 C 0.041 3.959 20 F -0.135 7.135 21 C -0.151 4.151 22 C -0.224 4.224 23 C -0.152 4.152 24 H 0.080 0.920 25 H 0.126 0.874 26 H 0.128 0.872 27 H 0.259 0.741 28 H 0.178 0.822 29 H 0.189 0.811 30 H 0.171 0.829 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.146 0.854 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.358 -21.872 3.306 24.019 hybrid contribution 0.990 1.718 -0.244 1.998 sum 10.348 -20.154 3.062 22.862 Atomic orbital electron populations 1.70190 1.08056 1.28601 1.48087 1.26133 0.95920 1.03350 0.93701 0.84953 0.78232 0.75977 0.78822 1.19268 1.20369 1.18063 1.23213 0.95352 0.92030 1.58831 0.89881 1.85627 1.10560 0.99240 1.97038 1.23360 1.03502 0.94373 1.06649 1.20108 0.86456 0.86382 0.75083 1.90703 1.17187 1.85784 1.48765 1.45082 1.10219 1.02790 1.75345 1.19067 1.03230 0.82993 0.92107 1.19032 0.91315 0.98184 0.95709 1.21413 1.01918 0.97622 0.91628 1.21405 0.91841 0.97863 0.99779 1.21485 0.97087 1.01913 0.96610 1.18092 0.76598 1.04035 0.97151 1.91447 1.30500 1.94751 1.96848 1.21043 0.95050 1.00327 0.98677 1.23418 1.00809 1.03575 0.94565 1.23529 0.95330 0.97886 0.98461 0.92028 0.87427 0.87247 0.74143 0.82227 0.81150 0.82914 0.87176 0.88389 0.88929 0.85360 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.71 13.22 21.65 0.29 -56.42 16 2 C 0.01 0.78 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.72 29.55 68.60 2.03 45.75 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 7 C -0.55 -31.34 9.50 67.95 0.65 -30.69 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.49 20.57 -56.49 -1.16 -9.66 16 10 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 11 C 0.53 19.47 7.74 87.66 0.68 20.15 16 12 O -0.55 -25.18 14.01 -3.03 -0.04 -25.22 16 13 N -0.68 -16.52 5.44 -426.32 -2.32 -18.84 16 14 C 0.11 2.47 1.84 2.86 0.01 2.48 16 15 C -0.04 -1.01 4.81 -19.87 -0.10 -1.11 16 16 C -0.11 -1.95 9.69 22.27 0.22 -1.74 16 17 C -0.09 -1.54 10.04 22.26 0.22 -1.31 16 18 C -0.15 -3.34 10.03 22.32 0.22 -3.12 16 19 C 0.06 1.79 7.30 22.38 0.16 1.96 16 20 F -0.16 -5.18 17.27 44.97 0.78 -4.40 16 21 C -0.13 -4.09 8.16 22.31 0.18 -3.91 16 22 C -0.19 -3.84 9.81 30.62 0.30 -3.54 16 23 C -0.11 -1.44 10.12 30.62 0.31 -1.13 16 24 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 25 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 26 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 27 H 0.42 6.89 8.83 -92.70 -0.82 6.07 16 28 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 29 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 30 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 31 H 0.11 3.98 7.61 -2.91 -0.02 3.96 16 32 H 0.10 2.07 8.04 -2.39 -0.02 2.05 16 33 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -80.22 327.55 3.62 -76.60 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.30 Total: 17.49 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 3.76 Total: -25.30 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -2.03 Total: -75.26 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.04 Total: -25.22 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.78 Total: -4.40 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.66 kcal Total: -80.22 3.62 -76.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156530459.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.865 kcal (2) G-P(sol) polarization free energy of solvation -80.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds