Wall clock time and date at job start Tue Mar 31 2020 06:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34772 * 120.00005 * 2 1 4 4 O 1.21291 * 120.00434 * 185.27708 * 3 2 1 5 5 C 1.50700 * 120.00049 * 5.28343 * 3 2 1 6 6 S 1.80999 * 109.47412 * 179.97438 * 5 3 2 7 7 C 1.76207 * 100.00000 * 179.97438 * 6 5 3 8 8 H 1.07997 * 119.99853 * 359.97438 * 7 6 5 9 9 C 1.38796 * 119.99686 * 179.97438 * 7 6 5 10 10 N 1.31629 * 120.00428 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99719 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47402 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47168 * 119.99963 * 11 9 7 14 14 H 1.48502 * 109.47382 * 239.99842 * 11 9 7 15 15 C 1.40102 * 120.00235 * 180.02562 * 2 1 3 16 16 C 1.38848 * 120.00172 * 112.84733 * 15 2 1 17 17 C 1.38173 * 120.06606 * 179.76934 * 16 15 2 18 18 C 1.38554 * 120.11790 * 0.41866 * 17 16 15 19 19 C 1.39280 * 119.94647 * 359.57595 * 18 17 16 20 20 C 1.38489 * 119.89467 * 0.21801 * 19 18 17 21 21 O 1.36515 * 108.64575 * 180.24785 * 19 18 17 22 22 C 1.43981 * 105.49650 * 342.69931 * 21 19 18 23 23 O 1.36601 * 131.44212 * 179.88456 * 18 17 16 24 24 H 1.09004 * 109.46921 * 269.99594 * 1 2 3 25 25 H 1.08999 * 109.47676 * 29.99941 * 1 2 3 26 26 H 1.09003 * 109.47034 * 149.99813 * 1 2 3 27 27 H 1.09006 * 109.46776 * 299.99333 * 5 3 2 28 28 H 1.08997 * 109.47524 * 59.99467 * 5 3 2 29 29 H 0.97005 * 120.00229 * 179.97438 * 10 9 7 30 30 H 1.07997 * 119.96795 * 359.97438 * 16 15 2 31 31 H 1.07997 * 119.93902 * 180.28592 * 17 16 15 32 32 H 1.08004 * 120.01416 * 180.02562 * 20 19 18 33 33 H 1.08996 * 110.56961 * 268.59088 * 22 21 19 34 34 H 1.09000 * 110.56876 * 145.71626 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3479 1.1695 -0.0966 5 6 1.3901 2.4695 0.1202 6 16 2.5651 3.8459 0.0905 7 6 1.4509 5.2027 0.2415 8 1 0.3886 5.0232 0.3171 9 6 1.9386 6.5020 0.2634 10 7 3.2332 6.7207 0.1707 11 14 0.7573 7.9403 0.4228 12 1 -0.6347 7.4304 0.5092 13 1 1.0787 8.7110 1.6507 14 1 0.8890 8.8229 -0.7642 15 6 2.1655 -1.2133 -0.0005 16 6 2.9170 -1.5806 -1.1088 17 6 3.6123 -2.7746 -1.1089 18 6 3.5547 -3.6127 -0.0071 19 6 2.8019 -3.2470 1.1061 20 6 2.1088 -2.0480 1.1070 21 8 2.9112 -4.2284 2.0487 22 6 3.4044 -5.3839 1.3454 23 8 4.1359 -4.8243 0.2386 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 0.6947 2.5670 -0.7135 28 1 0.8364 2.4851 1.0589 29 1 3.5740 7.6289 0.1856 30 1 2.9608 -0.9308 -1.9703 31 1 4.1998 -3.0561 -1.9702 32 1 1.5247 -1.7622 1.9694 33 1 2.5769 -5.9962 0.9871 34 1 4.0656 -5.9683 1.9852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160082800.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:38 Heat of formation + Delta-G solvation = -54.241329 kcal Electronic energy + Delta-G solvation = -20476.124837 eV Core-core repulsion = 17081.247426 eV Total energy + Delta-G solvation = -3394.877411 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.34429 -40.09276 -37.59181 -36.47842 -35.09854 -32.45398 -30.81736 -30.41734 -28.53031 -26.82845 -25.79424 -25.48333 -23.18853 -22.95963 -20.09589 -18.11398 -17.97706 -17.66158 -17.50311 -16.79225 -16.35063 -15.60295 -15.41480 -14.82703 -14.65406 -14.21110 -14.06031 -13.97960 -13.39624 -13.18217 -13.11339 -13.07985 -12.86323 -12.58144 -12.46148 -12.01320 -11.45913 -11.08817 -11.05367 -11.04605 -10.78065 -9.84138 -9.56408 -9.22296 -9.09702 -8.82401 -8.26882 -8.08089 -6.53941 -6.24167 -3.95436 0.90337 1.04688 2.43162 2.82326 2.91003 3.20071 3.20390 3.27376 3.30438 3.37659 3.54510 4.17302 4.29393 4.39165 4.62133 4.83694 4.94680 4.99750 5.01245 5.06102 5.11214 5.28501 5.37525 5.51899 5.54424 5.61977 5.82351 5.86472 5.92534 6.07025 6.12343 6.26712 6.66799 6.98321 7.31594 7.57513 8.32809 8.41857 9.21260 10.83266 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.041596 B = 0.002969 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.977513 B = 9427.612888 C = 9622.168147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.584 5.584 3 C 0.535 3.465 4 O -0.498 6.498 5 C -0.149 4.149 6 S -0.060 6.060 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.162 3.838 16 C -0.092 4.092 17 C -0.088 4.088 18 C 0.026 3.974 19 C 0.039 3.961 20 C -0.103 4.103 21 O -0.309 6.309 22 C 0.214 3.786 23 O -0.309 6.309 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.268 0.732 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.083 0.917 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.860 -22.549 -0.531 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.317 5.317 3 C 0.324 3.676 4 O -0.369 6.369 5 C -0.299 4.299 6 S 0.166 5.834 7 C -0.683 4.683 8 H 0.092 0.908 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.746 3.254 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.071 3.929 16 C -0.111 4.111 17 C -0.107 4.107 18 C -0.018 4.018 19 C -0.006 4.006 20 C -0.123 4.123 21 O -0.225 6.225 22 C 0.102 3.898 23 O -0.226 6.226 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.100 0.900 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.794 -22.484 -0.540 22.809 hybrid contribution -2.187 0.676 0.419 2.327 sum -5.981 -21.809 -0.120 22.614 Atomic orbital electron populations 1.21889 0.78111 1.03712 1.02401 1.45506 1.07025 1.03263 1.75917 1.20552 0.87963 0.84079 0.75019 1.90741 1.13898 1.86363 1.45944 1.23564 1.04668 0.96636 1.05032 1.85458 1.08419 0.93471 1.96003 1.22886 0.94719 0.92247 1.58450 0.90801 1.24999 0.95672 0.98398 0.94530 1.70026 1.11899 1.21608 1.46671 0.86107 0.80294 0.81072 0.77957 1.19593 1.20566 1.20554 1.17055 0.96516 0.86707 0.92640 1.21091 0.96752 0.94958 0.98349 1.19923 1.01453 0.93238 0.96102 1.19796 0.97105 0.88751 0.96191 1.19428 1.00383 0.93185 0.87577 1.20012 1.01131 0.92253 0.98947 1.87367 1.82906 1.20671 1.31530 1.25603 0.93903 0.87831 0.82477 1.87378 1.54303 1.30092 1.50804 0.92216 0.89854 0.90940 0.88871 0.88876 0.92193 0.84047 0.84235 0.84461 0.89970 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.10 59.84 0.60 1.40 16 2 N -0.58 -8.30 2.93 -120.80 -0.35 -8.65 16 3 C 0.54 10.00 7.57 -10.99 -0.08 9.92 16 4 O -0.50 -11.28 15.42 5.55 0.09 -11.19 16 5 C -0.15 -2.91 4.83 36.01 0.17 -2.74 16 6 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 7 C -0.53 -14.95 9.50 30.94 0.29 -14.65 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 10 N -0.87 -25.90 13.22 55.49 0.73 -25.16 16 11 Si 0.92 21.12 29.55 -169.99 -5.02 16.09 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.16 2.24 4.83 -83.64 -0.40 1.84 16 16 C -0.09 -1.20 9.30 -39.38 -0.37 -1.56 16 17 C -0.09 -1.04 10.05 -39.49 -0.40 -1.44 16 18 C 0.03 0.32 7.15 -39.08 -0.28 0.04 16 19 C 0.04 0.50 7.15 -39.10 -0.28 0.22 16 20 C -0.10 -1.33 9.86 -39.28 -0.39 -1.72 16 21 O -0.31 -3.62 11.40 -45.74 -0.52 -4.14 16 22 C 0.21 1.75 8.89 101.05 0.90 2.65 16 23 O -0.31 -3.53 11.41 -46.02 -0.53 -4.05 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.79 6.48 -51.93 -0.34 0.45 16 26 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 27 H 0.09 1.64 7.24 -51.91 -0.38 1.26 16 28 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 315.18 15.07 4.75 4.75 Total: -1.00 -35.12 315.18 -7.02 -42.14 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -3.63 Total: -1.90 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -0.32 Total: -4.06 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.38 Total: -33.82 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.96 Total: -19.39 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.12 -7.02 -42.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160082800.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.097 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds