Wall clock time and date at job start Tue Mar 31 2020 07:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99493 * 3 2 1 6 6 H 1.48498 * 109.47326 * 59.99268 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.40156 * 111.00184 * 179.97438 * 12 11 10 14 14 C 1.38951 * 120.03772 * 299.72981 * 13 12 11 15 15 F 1.35098 * 120.01939 * 359.97438 * 14 13 12 16 16 C 1.38502 * 119.95374 * 179.74052 * 14 13 12 17 17 F 1.35103 * 119.97836 * 180.27236 * 16 14 13 18 18 C 1.38602 * 120.04042 * 0.51011 * 16 14 13 19 19 F 1.35100 * 119.95734 * 179.74449 * 18 16 14 20 20 C 1.38604 * 120.08192 * 359.76548 * 18 16 14 21 21 F 1.35104 * 119.97528 * 180.02562 * 20 18 16 22 22 C 1.38495 * 120.04133 * 359.97438 * 20 18 16 23 23 F 1.35101 * 120.01992 * 179.97438 * 22 20 18 24 24 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 26 26 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 27 27 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 28 28 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 29 29 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 30 30 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 31 31 H 1.00908 * 110.99847 * 56.04959 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7669 -7.3357 0.0017 14 6 0.9121 -7.6624 1.0473 15 9 0.7247 -6.7928 2.0640 16 6 0.2486 -8.8782 1.0440 17 9 -0.5869 -9.1940 2.0576 18 6 0.4451 -9.7730 0.0039 19 9 -0.1990 -10.9606 0.0050 20 6 1.3018 -9.4512 -1.0370 21 9 1.4913 -10.3248 -2.0500 22 6 1.9629 -8.2342 -1.0398 23 9 2.7982 -7.9211 -2.0544 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6042 -0.8894 29 1 0.8534 -5.0451 -0.8886 30 1 0.8541 -5.0445 0.8914 31 1 3.0704 -6.0365 0.7816 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160643878.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:15 Heat of formation + Delta-G solvation = -197.346657 kcal Electronic energy + Delta-G solvation = -23123.965690 eV Core-core repulsion = 18627.185640 eV Total energy + Delta-G solvation = -4496.780050 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.069 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.40947 -50.11671 -49.65979 -49.12520 -48.77140 -39.48403 -36.37862 -33.67286 -31.63671 -30.52542 -29.16668 -26.28644 -23.95308 -23.57366 -22.51210 -20.42910 -19.52376 -19.22901 -18.63996 -17.73238 -17.11404 -16.95564 -16.66842 -16.44640 -16.40574 -16.10809 -15.90837 -15.41645 -15.30769 -15.04643 -14.86604 -14.73096 -14.41798 -14.05717 -13.63209 -13.07347 -12.51122 -12.37497 -11.90413 -11.71844 -11.65775 -10.93821 -10.76283 -10.56458 -9.86840 -9.58439 -9.31826 -9.27453 -9.12181 -8.98816 -8.39038 -6.03872 -4.06433 -0.18020 -0.12111 2.14022 2.37923 3.03511 3.20906 3.29322 3.32891 3.37085 3.41123 3.57511 3.72730 4.27583 4.35909 4.43978 4.71051 4.93916 5.20658 5.32342 5.45237 5.57314 5.81863 6.05789 6.39829 6.52494 6.88188 6.91708 7.06244 7.61431 7.73513 7.95169 8.37083 9.00563 9.58130 11.07561 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.026441 B = 0.003290 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.708288 B = 8508.757593 C = 9190.412377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.049 3.951 12 N -0.634 5.634 13 C 0.082 3.918 14 C 0.085 3.915 15 F -0.097 7.097 16 C 0.062 3.938 17 F -0.103 7.103 18 C 0.085 3.915 19 F -0.100 7.100 20 C 0.058 3.942 21 F -0.102 7.102 22 C 0.142 3.858 23 F -0.089 7.089 24 H 0.260 0.740 25 H 0.017 0.983 26 H 0.016 0.984 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -21.527 0.856 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.076 4.076 12 N -0.268 5.268 13 C -0.017 4.017 14 C 0.061 3.939 15 F -0.075 7.075 16 C 0.040 3.960 17 F -0.081 7.081 18 C 0.063 3.937 19 F -0.079 7.079 20 C 0.036 3.964 21 F -0.080 7.080 22 C 0.120 3.880 23 F -0.067 7.067 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.951 -21.393 0.191 21.483 hybrid contribution -0.134 0.649 0.912 1.127 sum 1.817 -20.745 1.103 20.853 Atomic orbital electron populations 1.69972 1.06079 1.26570 1.50842 1.25028 0.94851 0.99331 0.95264 0.86528 0.80127 0.83714 0.77591 1.19691 1.20985 1.21026 1.21249 0.93110 0.90881 1.50599 0.92511 1.19069 0.93940 0.91183 0.97371 1.21652 0.99365 0.92011 1.01324 1.22542 0.93914 0.89424 1.01744 1.58269 1.19759 0.97907 1.50823 1.18513 0.97121 0.94235 0.91823 1.18010 0.99789 0.87532 0.88545 1.91628 1.93446 1.66573 1.55901 1.17091 0.96641 0.93883 0.88430 1.91624 1.67955 1.92562 1.55987 1.16732 0.97749 0.84170 0.95066 1.91623 1.78857 1.41286 1.96091 1.16993 1.01505 0.89402 0.88478 1.91624 1.93694 1.66665 1.56021 1.16748 0.92809 0.91134 0.87322 1.91644 1.67233 1.92406 1.55435 0.93016 0.96419 0.96563 0.93074 0.92026 0.90480 0.93390 0.80807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.11 -2.02 5.41 -26.74 -0.14 -2.16 16 11 C 0.05 0.77 5.36 -3.83 -0.02 0.75 16 12 N -0.63 -8.10 6.24 -58.21 -0.36 -8.47 16 13 C 0.08 0.93 5.61 -83.53 -0.47 0.46 16 14 C 0.09 0.93 7.00 -39.22 -0.27 0.66 16 15 F -0.10 -1.21 15.02 2.25 0.03 -1.18 16 16 C 0.06 0.64 7.31 -39.35 -0.29 0.35 16 17 F -0.10 -1.14 17.09 2.25 0.04 -1.10 16 18 C 0.08 0.82 7.31 -39.31 -0.29 0.53 16 19 F -0.10 -1.02 17.09 2.25 0.04 -0.98 16 20 C 0.06 0.58 7.31 -39.35 -0.29 0.29 16 21 F -0.10 -1.06 17.09 2.25 0.04 -1.02 16 22 C 0.14 1.53 7.31 -39.23 -0.29 1.24 16 23 F -0.09 -1.08 16.98 2.25 0.04 -1.04 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.75 6.08 -51.93 -0.32 0.44 16 31 H 0.37 4.09 8.76 -39.29 -0.34 3.74 16 LS Contribution 297.41 15.07 4.48 4.48 Total: -1.00 -28.85 297.41 -4.90 -33.75 By element: Atomic # 1 Polarization: -1.95 SS G_CDS: -2.31 Total: -4.26 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -2.61 Total: -10.71 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.37 Total: -34.30 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.19 Total: -5.32 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.85 -4.90 -33.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160643878.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.593 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds