Wall clock time and date at job start Tue Mar 31 2020 07:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99493 * 3 2 1 6 6 H 1.48498 * 109.47326 * 59.99268 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.40156 * 111.00184 * 179.97438 * 12 11 10 14 14 C 1.38951 * 120.03772 * 299.72981 * 13 12 11 15 15 F 1.35098 * 120.01939 * 359.97438 * 14 13 12 16 16 C 1.38502 * 119.95374 * 179.74052 * 14 13 12 17 17 F 1.35103 * 119.97836 * 180.27236 * 16 14 13 18 18 C 1.38602 * 120.04042 * 0.51011 * 16 14 13 19 19 F 1.35100 * 119.95734 * 179.74449 * 18 16 14 20 20 C 1.38604 * 120.08192 * 359.76548 * 18 16 14 21 21 F 1.35104 * 119.97528 * 180.02562 * 20 18 16 22 22 C 1.38495 * 120.04133 * 359.97438 * 20 18 16 23 23 F 1.35101 * 120.01992 * 179.97438 * 22 20 18 24 24 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 26 26 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 27 27 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 28 28 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 29 29 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 30 30 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 31 31 H 1.00908 * 110.99847 * 56.04959 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7669 -7.3357 0.0017 14 6 0.9121 -7.6624 1.0473 15 9 0.7247 -6.7928 2.0640 16 6 0.2486 -8.8782 1.0440 17 9 -0.5869 -9.1940 2.0576 18 6 0.4451 -9.7730 0.0039 19 9 -0.1990 -10.9606 0.0050 20 6 1.3018 -9.4512 -1.0370 21 9 1.4913 -10.3248 -2.0500 22 6 1.9629 -8.2342 -1.0398 23 9 2.7982 -7.9211 -2.0544 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6042 -0.8894 29 1 0.8534 -5.0451 -0.8886 30 1 0.8541 -5.0445 0.8914 31 1 3.0704 -6.0365 0.7816 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160643878.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:15 Heat of formation + Delta-G solvation = -213.268374 kcal Electronic energy + Delta-G solvation = -23124.656108 eV Core-core repulsion = 18627.185640 eV Total energy + Delta-G solvation = -4497.470468 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.069 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.26652 -51.00403 -50.55449 -50.02277 -49.63494 -40.41555 -37.57258 -35.50179 -33.35369 -31.39506 -30.39584 -27.93735 -25.07944 -24.71134 -23.79974 -22.09003 -20.40940 -20.11100 -19.54910 -18.68024 -18.41696 -17.99163 -17.84861 -17.61139 -17.30760 -17.11500 -16.85911 -16.57826 -16.31626 -16.16664 -16.06909 -15.72928 -15.66290 -15.50223 -14.56267 -14.34139 -14.09270 -13.64791 -13.44825 -13.28277 -12.77627 -12.63742 -12.48028 -12.31491 -11.61551 -11.44405 -11.17126 -10.54537 -10.26172 -10.15498 -10.07097 -8.19186 -6.29605 -1.03882 -0.97869 1.27318 1.41691 1.42440 1.51081 1.55383 2.15353 2.33555 2.39449 2.45080 2.67501 2.85577 3.14884 3.36456 3.50880 3.81160 4.03853 4.11134 4.23311 4.35145 4.62768 4.82469 4.92138 5.08632 5.21876 5.50639 5.62165 5.75156 5.87076 5.98922 6.26008 6.87824 7.39922 8.92868 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.026441 B = 0.003290 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.708288 B = 8508.757593 C = 9190.412377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.023 3.977 10 C -0.091 4.091 11 C 0.064 3.936 12 N -0.633 5.633 13 C 0.080 3.920 14 C 0.087 3.913 15 F -0.106 7.106 16 C 0.069 3.931 17 F -0.106 7.106 18 C 0.099 3.901 19 F -0.099 7.099 20 C 0.071 3.929 21 F -0.102 7.102 22 C 0.147 3.853 23 F -0.097 7.097 24 H 0.263 0.737 25 H -0.007 1.007 26 H -0.006 1.006 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.979 -22.135 0.877 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.080 0.920 9 C -0.014 4.014 10 C -0.129 4.129 11 C -0.063 4.063 12 N -0.267 5.267 13 C -0.019 4.019 14 C 0.064 3.936 15 F -0.085 7.085 16 C 0.046 3.954 17 F -0.085 7.085 18 C 0.077 3.923 19 F -0.077 7.077 20 C 0.049 3.951 21 F -0.080 7.080 22 C 0.124 3.876 23 F -0.074 7.074 24 H 0.072 0.928 25 H 0.011 0.989 26 H 0.012 0.988 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.944 -22.025 0.216 22.222 hybrid contribution -0.467 0.753 0.901 1.264 sum 2.477 -21.272 1.117 21.444 Atomic orbital electron populations 1.70099 1.07782 1.27661 1.51884 1.25963 0.95736 1.03334 0.94825 0.85418 0.79182 0.78892 0.77673 1.18476 1.20539 1.20503 1.21723 0.93647 0.92270 1.50196 0.91995 1.18976 0.94456 0.92956 0.95043 1.21366 0.98121 0.91784 1.01660 1.22181 0.93719 0.88882 1.01519 1.58069 1.19261 0.97728 1.51604 1.18349 0.97622 0.93720 0.92241 1.17920 0.99908 0.87579 0.88223 1.91608 1.93558 1.66972 1.56324 1.16988 0.96367 0.93630 0.88368 1.91621 1.68070 1.92552 1.56213 1.16591 0.97224 0.83894 0.94594 1.91635 1.78806 1.41257 1.96041 1.16824 1.01044 0.88947 0.88283 1.91632 1.93657 1.66624 1.56074 1.16669 0.92750 0.91280 0.86854 1.91630 1.67529 1.92514 1.55769 0.92835 0.98851 0.98798 0.92147 0.92144 0.90991 0.93491 0.79667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.02 1.19 4.97 29.84 0.15 1.34 16 10 C -0.09 -3.46 5.41 30.59 0.17 -3.30 16 11 C 0.06 1.95 5.36 86.30 0.46 2.41 16 12 N -0.63 -15.29 6.24 -338.07 -2.11 -17.40 16 13 C 0.08 1.67 5.61 38.15 0.21 1.89 16 14 C 0.09 1.79 7.00 22.50 0.16 1.94 16 15 F -0.11 -2.54 15.02 44.97 0.68 -1.86 16 16 C 0.07 1.30 7.31 22.42 0.16 1.46 16 17 F -0.11 -2.19 17.09 44.97 0.77 -1.43 16 18 C 0.10 1.72 7.31 22.44 0.16 1.89 16 19 F -0.10 -1.81 17.09 44.97 0.77 -1.04 16 20 C 0.07 1.27 7.31 22.42 0.16 1.43 16 21 F -0.10 -1.91 17.09 44.97 0.77 -1.14 16 22 C 0.15 2.90 7.31 22.50 0.16 3.06 16 23 F -0.10 -2.18 16.98 44.97 0.76 -1.42 16 24 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 25 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 26 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.05 1.45 6.08 -2.39 -0.01 1.44 16 31 H 0.38 7.77 8.76 -89.69 -0.79 6.99 16 Total: -1.00 -60.91 297.41 6.88 -54.03 By element: Atomic # 1 Polarization: -2.63 SS G_CDS: 0.43 Total: -2.20 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 2.50 Total: -17.33 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -1.82 Total: -73.35 kcal Atomic # 9 Polarization: -10.63 SS G_CDS: 3.74 Total: -6.89 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -60.91 6.88 -54.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160643878.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.238 kcal (2) G-P(sol) polarization free energy of solvation -60.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds