Wall clock time and date at job start Tue Mar 31 2020 06:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00456 * 2 1 4 4 H 1.48496 * 109.47738 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47227 * 300.00025 * 3 2 1 6 6 H 1.48499 * 109.46886 * 59.99512 * 3 2 1 7 7 C 1.38802 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00291 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99702 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99898 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46904 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00394 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99530 * 180.02562 * 11 10 9 14 14 C 1.47241 * 121.34494 * 180.02562 * 13 11 10 15 15 C 1.52791 * 107.88187 * 115.64477 * 14 13 11 16 16 C 1.50598 * 110.81866 * 47.44295 * 15 14 13 17 17 C 1.39207 * 117.61072 * 160.38819 * 16 15 14 18 18 F 1.35105 * 119.73414 * 359.56671 * 17 16 15 19 19 C 1.38130 * 120.52897 * 179.54207 * 17 16 15 20 20 C 1.38222 * 119.79927 * 359.97438 * 19 17 16 21 21 C 1.37784 * 119.73206 * 0.12698 * 20 19 17 22 22 C 1.37566 * 122.93163 * 340.22500 * 16 15 14 23 23 C 1.46687 * 121.35199 * 359.97438 * 13 11 10 24 24 H 0.96998 * 119.99939 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46757 * 60.00630 * 10 9 7 26 26 H 1.09000 * 109.47334 * 300.00097 * 10 9 7 27 27 H 1.08995 * 109.78098 * 356.04964 * 14 13 11 28 28 H 1.08998 * 109.77583 * 235.23420 * 14 13 11 29 29 H 1.09002 * 109.20205 * 167.77627 * 15 14 13 30 30 H 1.09002 * 109.19674 * 287.11302 * 15 14 13 31 31 H 1.08002 * 120.09826 * 179.97438 * 19 17 16 32 32 H 1.08004 * 120.13160 * 180.21420 * 20 19 17 33 33 H 1.08000 * 119.68053 * 179.97438 * 21 20 19 34 34 H 1.09002 * 109.43597 * 344.38887 * 23 13 11 35 35 H 1.09002 * 109.43539 * 104.30970 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9872 -5.3028 0.0036 12 8 0.7909 -5.5023 0.0029 13 7 2.8440 -6.3432 0.0049 14 6 2.3602 -7.7338 0.0050 15 6 2.8018 -8.3843 -1.3051 16 6 4.2563 -8.1050 -1.5777 17 6 4.9166 -8.9402 -2.4746 18 9 4.2490 -9.9612 -3.0553 19 6 6.2486 -8.7331 -2.7759 20 6 6.9326 -7.6883 -2.1833 21 6 6.2808 -6.8622 -1.2938 22 6 4.9431 -7.0706 -0.9853 23 6 4.2962 -6.1360 0.0052 24 1 -0.4850 0.8400 -0.0004 25 1 3.1243 -3.7306 0.8929 26 1 3.1244 -3.7322 -0.8872 27 1 1.2725 -7.7460 0.0745 28 1 2.7905 -8.2740 0.8483 29 1 2.6497 -9.4616 -1.2396 30 1 2.2010 -7.9866 -2.1231 31 1 6.7542 -9.3856 -3.4724 32 1 7.9732 -7.5194 -2.4177 33 1 6.8162 -6.0464 -0.8310 34 1 4.5155 -5.1050 -0.2723 35 1 4.6908 -6.3353 1.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160853504.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:06 Heat of formation + Delta-G solvation = -56.203679 kcal Electronic energy + Delta-G solvation = -20635.460340 eV Core-core repulsion = 17252.870625 eV Total energy + Delta-G solvation = -3382.589715 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.12254 -40.46345 -38.81114 -36.01665 -33.17721 -32.44777 -31.57548 -30.08155 -28.57367 -25.94175 -25.48430 -23.96627 -22.40557 -21.31919 -18.95007 -17.79966 -17.67311 -16.75976 -16.48530 -16.07914 -15.90599 -15.60860 -15.32847 -14.82200 -14.22528 -14.11769 -13.84428 -13.68938 -13.53070 -13.24151 -12.84628 -12.62053 -12.46229 -12.18603 -11.97560 -11.73028 -11.57845 -11.08521 -11.03692 -10.96830 -10.76639 -9.82300 -9.46331 -9.09437 -9.03702 -8.90321 -8.61440 -8.24909 -6.52494 -6.23541 -3.94385 0.85910 0.90645 2.83244 2.98205 3.20365 3.23393 3.25389 3.29667 3.54562 3.94552 4.17946 4.29977 4.36523 4.61205 4.66380 4.83743 4.97330 5.07743 5.11654 5.12553 5.17761 5.30389 5.39480 5.51948 5.57529 5.70377 5.76790 5.81207 5.89152 5.91985 6.03405 6.06873 6.15469 6.47959 6.60589 7.47534 7.58043 8.33401 8.47787 9.21909 10.83959 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.023727 B = 0.003563 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.786870 B = 7856.160161 C = 8636.887006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.540 3.460 12 O -0.512 6.512 13 N -0.623 5.623 14 C 0.115 3.885 15 C -0.098 4.098 16 C -0.098 4.098 17 C 0.095 3.905 18 F -0.139 7.139 19 C -0.155 4.155 20 C -0.093 4.093 21 C -0.122 4.122 22 C -0.065 4.065 23 C 0.149 3.851 24 H 0.268 0.732 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.735 -17.523 -2.271 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.328 3.672 12 O -0.386 6.386 13 N -0.359 5.359 14 C -0.007 4.007 15 C -0.136 4.136 16 C -0.099 4.099 17 C 0.076 3.924 18 F -0.117 7.117 19 C -0.174 4.174 20 C -0.112 4.112 21 C -0.141 4.141 22 C -0.066 4.066 23 C 0.026 3.974 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.123 0.877 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.723 -17.730 -2.283 21.942 hybrid contribution 2.067 1.015 -0.270 2.318 sum 14.790 -16.715 -2.553 22.464 Atomic orbital electron populations 1.70025 1.05962 1.27377 1.46863 1.24992 0.95021 0.99037 0.94507 0.86116 0.79575 0.81878 0.77922 1.19604 1.20558 1.20553 1.22895 0.94919 0.91576 1.58944 0.90859 1.85430 1.04845 0.96363 1.96697 1.23570 1.06658 0.95250 1.04777 1.20302 0.86104 0.86007 0.74778 1.90700 1.14997 1.85105 1.47770 1.48073 1.05831 1.06118 1.75877 1.21504 1.01981 0.81210 0.96038 1.20793 0.91353 1.01754 0.99669 1.19532 0.96794 0.95732 0.97859 1.17742 0.90766 0.87643 0.96271 1.91484 1.80678 1.56952 1.82615 1.21073 0.92944 1.00600 1.02788 1.20865 1.00121 0.94074 0.96096 1.21091 0.93728 1.00375 0.98909 1.19736 0.94028 0.95354 0.97526 1.20528 0.80139 0.99231 0.97545 0.92212 0.89109 0.89192 0.87981 0.90996 0.89432 0.89586 0.84798 0.84825 0.84900 0.87750 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.03 4.58 36.01 0.16 -2.86 16 11 C 0.54 10.14 7.74 -10.98 -0.08 10.06 16 12 O -0.51 -11.56 15.35 5.56 0.09 -11.48 16 13 N -0.62 -8.81 2.93 -174.39 -0.51 -9.32 16 14 C 0.12 1.39 6.44 -3.75 -0.02 1.37 16 15 C -0.10 -1.10 5.56 -28.04 -0.16 -1.25 16 16 C -0.10 -1.11 5.77 -104.56 -0.60 -1.71 16 17 C 0.09 1.03 7.21 -39.26 -0.28 0.75 16 18 F -0.14 -1.59 16.41 2.25 0.04 -1.56 16 19 C -0.16 -1.39 10.02 -39.63 -0.40 -1.78 16 20 C -0.09 -0.73 10.04 -39.75 -0.40 -1.13 16 21 C -0.12 -1.05 9.61 -39.52 -0.38 -1.43 16 22 C -0.07 -0.68 5.81 -104.60 -0.61 -1.29 16 23 C 0.15 1.62 6.08 -5.06 -0.03 1.59 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.09 1.64 8.11 -51.92 -0.42 1.22 16 26 H 0.09 1.66 7.58 -51.92 -0.39 1.27 16 27 H 0.10 1.37 7.07 -51.93 -0.37 1.00 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.84 7.76 -51.93 -0.40 0.43 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 33 H 0.13 0.85 8.05 -52.49 -0.42 0.42 16 34 H 0.10 1.11 6.20 -51.93 -0.32 0.79 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 314.65 15.07 4.74 4.74 Total: -1.00 -33.94 314.65 -8.74 -42.69 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -3.99 Total: -1.70 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -2.60 Total: -10.46 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.22 Total: -34.55 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.94 -8.74 -42.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160853504.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.518 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds