Wall clock time and date at job start Tue Mar 31 2020 06:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00456 * 2 1 4 4 H 1.48496 * 109.47738 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47227 * 300.00025 * 3 2 1 6 6 H 1.48499 * 109.46886 * 59.99512 * 3 2 1 7 7 C 1.38802 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00291 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99702 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99898 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46904 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00394 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99530 * 180.02562 * 11 10 9 14 14 C 1.47241 * 121.34494 * 180.02562 * 13 11 10 15 15 C 1.52791 * 107.88187 * 115.64477 * 14 13 11 16 16 C 1.50598 * 110.81866 * 47.44295 * 15 14 13 17 17 C 1.39207 * 117.61072 * 160.38819 * 16 15 14 18 18 F 1.35105 * 119.73414 * 359.56671 * 17 16 15 19 19 C 1.38130 * 120.52897 * 179.54207 * 17 16 15 20 20 C 1.38222 * 119.79927 * 359.97438 * 19 17 16 21 21 C 1.37784 * 119.73206 * 0.12698 * 20 19 17 22 22 C 1.37566 * 122.93163 * 340.22500 * 16 15 14 23 23 C 1.46687 * 121.35199 * 359.97438 * 13 11 10 24 24 H 0.96998 * 119.99939 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46757 * 60.00630 * 10 9 7 26 26 H 1.09000 * 109.47334 * 300.00097 * 10 9 7 27 27 H 1.08995 * 109.78098 * 356.04964 * 14 13 11 28 28 H 1.08998 * 109.77583 * 235.23420 * 14 13 11 29 29 H 1.09002 * 109.20205 * 167.77627 * 15 14 13 30 30 H 1.09002 * 109.19674 * 287.11302 * 15 14 13 31 31 H 1.08002 * 120.09826 * 179.97438 * 19 17 16 32 32 H 1.08004 * 120.13160 * 180.21420 * 20 19 17 33 33 H 1.08000 * 119.68053 * 179.97438 * 21 20 19 34 34 H 1.09002 * 109.43597 * 344.38887 * 23 13 11 35 35 H 1.09002 * 109.43539 * 104.30970 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9872 -5.3028 0.0036 12 8 0.7909 -5.5023 0.0029 13 7 2.8440 -6.3432 0.0049 14 6 2.3602 -7.7338 0.0050 15 6 2.8018 -8.3843 -1.3051 16 6 4.2563 -8.1050 -1.5777 17 6 4.9166 -8.9402 -2.4746 18 9 4.2490 -9.9612 -3.0553 19 6 6.2486 -8.7331 -2.7759 20 6 6.9326 -7.6883 -2.1833 21 6 6.2808 -6.8622 -1.2938 22 6 4.9431 -7.0706 -0.9853 23 6 4.2962 -6.1360 0.0052 24 1 -0.4850 0.8400 -0.0004 25 1 3.1243 -3.7306 0.8929 26 1 3.1244 -3.7322 -0.8872 27 1 1.2725 -7.7460 0.0745 28 1 2.7905 -8.2740 0.8483 29 1 2.6497 -9.4616 -1.2396 30 1 2.2010 -7.9866 -2.1231 31 1 6.7542 -9.3856 -3.4724 32 1 7.9732 -7.5194 -2.4177 33 1 6.8162 -6.0464 -0.8310 34 1 4.5155 -5.1050 -0.2723 35 1 4.6908 -6.3353 1.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160853504.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:05 Heat of formation + Delta-G solvation = -76.601172 kcal Electronic energy + Delta-G solvation = -20636.344841 eV Core-core repulsion = 17252.870625 eV Total energy + Delta-G solvation = -3383.474217 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.93578 -41.48948 -39.93724 -37.12724 -34.57483 -34.15440 -32.43040 -31.24867 -29.70049 -27.68137 -26.83728 -24.88419 -23.15628 -22.34604 -20.29331 -19.48393 -18.59401 -18.01541 -17.45973 -17.05619 -16.87406 -16.74109 -16.62159 -16.48944 -15.83304 -15.30169 -14.81321 -14.66606 -14.53117 -14.42530 -14.27951 -13.83345 -13.42160 -13.32851 -13.13521 -13.02122 -12.90673 -12.62186 -12.47175 -12.42000 -11.81554 -11.68470 -11.14907 -10.98336 -10.26055 -9.93902 -9.71819 -9.53665 -8.66954 -8.33701 -6.12170 0.14985 0.19082 1.24585 1.42933 1.45954 1.52017 1.58001 2.01855 2.27905 2.55768 3.00968 3.16183 3.25751 3.51151 3.59337 3.70515 3.83972 3.97632 4.16524 4.23146 4.28185 4.31004 4.43315 4.46454 4.55232 4.59718 4.73808 4.78691 4.93774 5.08376 5.18929 5.35336 5.37086 5.43488 5.45919 5.91403 6.20744 6.23091 7.06592 7.07922 8.75840 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.023727 B = 0.003563 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.786870 B = 7856.160161 C = 8636.887006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.086 0.914 9 S -0.154 6.154 10 C -0.124 4.124 11 C 0.538 3.462 12 O -0.563 6.563 13 N -0.611 5.611 14 C 0.114 3.886 15 C -0.091 4.091 16 C -0.119 4.119 17 C 0.073 3.927 18 F -0.149 7.149 19 C -0.155 4.155 20 C -0.087 4.087 21 C -0.119 4.119 22 C -0.077 4.077 23 C 0.143 3.857 24 H 0.271 0.729 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.152 0.848 32 H 0.167 0.833 33 H 0.160 0.840 34 H 0.110 0.890 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.659 -17.438 -2.162 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.691 4.691 8 H 0.104 0.896 9 S 0.073 5.927 10 C -0.275 4.275 11 C 0.326 3.674 12 O -0.441 6.441 13 N -0.345 5.345 14 C -0.008 4.008 15 C -0.129 4.129 16 C -0.120 4.120 17 C 0.054 3.946 18 F -0.128 7.128 19 C -0.174 4.174 20 C -0.105 4.105 21 C -0.137 4.137 22 C -0.078 4.078 23 C 0.021 3.979 24 H 0.080 0.920 25 H 0.133 0.867 26 H 0.126 0.874 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.170 0.830 32 H 0.184 0.816 33 H 0.177 0.823 34 H 0.128 0.872 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 16.701 -17.689 -2.176 24.425 hybrid contribution 0.957 0.831 -0.326 1.308 sum 17.658 -16.858 -2.502 24.541 Atomic orbital electron populations 1.70194 1.08048 1.28531 1.48124 1.26134 0.95936 1.03347 0.93734 0.84898 0.78753 0.76277 0.77981 1.17730 1.20118 1.20004 1.23233 0.95411 0.91753 1.58716 0.89638 1.85648 1.10598 0.99400 1.97034 1.23380 1.03548 0.93944 1.06655 1.20112 0.85855 0.86520 0.74876 1.90683 1.17113 1.85700 1.50561 1.48032 1.07052 1.05795 1.73642 1.21649 1.01130 0.80267 0.97711 1.20682 0.91702 1.02324 0.98198 1.19584 0.96549 0.96809 0.99027 1.17990 0.91732 0.87885 0.96992 1.91454 1.81052 1.57419 1.82865 1.21401 0.92138 1.01083 1.02735 1.21279 1.01486 0.92870 0.94858 1.21416 0.92862 1.00887 0.98516 1.19764 0.95020 0.95132 0.97847 1.20849 0.77698 0.99859 0.99478 0.92039 0.86737 0.87431 0.89928 0.88184 0.88099 0.91773 0.82978 0.81584 0.82269 0.87235 0.86833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.83 13.22 21.65 0.29 -55.54 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 42.95 29.55 68.60 2.03 44.98 16 4 H -0.25 -10.06 7.11 99.48 0.71 -9.36 16 5 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.54 -30.56 9.50 67.95 0.65 -29.91 16 8 H 0.09 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 10 C -0.12 -4.87 4.58 71.24 0.33 -4.54 16 11 C 0.54 20.31 7.74 87.66 0.68 20.99 16 12 O -0.56 -26.47 15.35 -3.03 -0.05 -26.52 16 13 N -0.61 -16.65 2.93 -824.04 -2.42 -19.06 16 14 C 0.11 2.72 6.44 86.17 0.55 3.27 16 15 C -0.09 -2.04 5.56 29.75 0.17 -1.87 16 16 C -0.12 -2.52 5.77 -19.82 -0.11 -2.63 16 17 C 0.07 1.49 7.21 22.48 0.16 1.65 16 18 F -0.15 -3.36 16.41 44.97 0.74 -2.62 16 19 C -0.15 -2.33 10.02 22.24 0.22 -2.11 16 20 C -0.09 -1.01 10.04 22.16 0.22 -0.79 16 21 C -0.12 -1.55 9.61 22.31 0.21 -1.34 16 22 C -0.08 -1.40 5.81 -19.85 -0.12 -1.51 16 23 C 0.14 2.70 6.08 85.62 0.52 3.22 16 24 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 25 H 0.11 3.92 8.11 -2.39 -0.02 3.90 16 26 H 0.11 3.82 7.58 -2.39 -0.02 3.80 16 27 H 0.08 2.31 7.07 -2.39 -0.02 2.29 16 28 H 0.10 1.83 8.14 -2.39 -0.02 1.82 16 29 H 0.10 1.92 7.76 -2.39 -0.02 1.90 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 33 H 0.16 1.22 8.05 -2.91 -0.02 1.20 16 34 H 0.11 1.96 6.20 -2.39 -0.01 1.95 16 35 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -76.83 314.65 4.48 -72.34 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 1.11 Total: 10.48 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 3.95 Total: -14.37 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -2.13 Total: -74.61 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.74 Total: -2.62 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -76.83 4.48 -72.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160853504.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.258 kcal (2) G-P(sol) polarization free energy of solvation -76.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds