Wall clock time and date at job start Tue Mar 31 2020 06:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34233 * 117.00291 * 2 1 4 4 O 1.20827 * 119.99707 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00093 * 179.97438 * 3 2 1 6 6 N 1.46492 * 109.47008 * 179.97438 * 5 3 2 7 7 C 1.34784 * 120.00217 * 180.02562 * 6 5 3 8 8 O 1.21552 * 119.99611 * 359.97438 * 7 6 5 9 9 C 1.47865 * 120.00304 * 179.97438 * 7 6 5 10 10 C 1.39665 * 120.09843 * 359.97438 * 9 7 6 11 11 C 1.38047 * 120.03832 * 180.02562 * 10 9 7 12 12 C 1.38176 * 120.23812 * 359.67600 * 11 10 9 13 13 C 1.39179 * 120.20540 * 0.60009 * 12 11 10 14 14 S 1.76194 * 120.02163 * 179.69520 * 13 12 11 15 15 C 1.76196 * 100.00182 * 265.25136 * 14 13 12 16 16 H 1.08000 * 120.00393 * 5.12593 * 15 14 13 17 17 C 1.38736 * 120.00006 * 185.12109 * 15 14 13 18 18 N 1.31616 * 119.99932 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99686 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47076 * 59.99906 * 19 17 15 21 21 H 1.48496 * 109.46794 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46962 * 299.99839 * 19 17 15 23 23 C 1.38875 * 119.95687 * 359.42658 * 13 12 11 24 24 H 1.08998 * 109.47210 * 300.00661 * 1 2 3 25 25 H 1.09000 * 109.46646 * 60.00329 * 1 2 3 26 26 H 1.09000 * 109.46926 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46791 * 59.99885 * 5 3 2 28 28 H 1.09002 * 109.47038 * 299.99811 * 5 3 2 29 29 H 0.96996 * 120.00373 * 359.97438 * 6 5 3 30 30 H 1.08002 * 119.98607 * 0.02562 * 10 9 7 31 31 H 1.07993 * 119.87788 * 179.97438 * 11 10 9 32 32 H 1.08004 * 119.89897 * 180.29644 * 12 11 10 33 33 H 0.97004 * 119.99833 * 179.97438 * 18 17 15 34 34 H 1.08000 * 120.12505 * 180.25503 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 5.2922 2.9949 -0.0003 8 8 6.1293 2.1136 0.0006 9 6 5.7115 4.4129 -0.0016 10 6 4.7514 5.4272 -0.0033 11 6 5.1442 6.7506 -0.0050 12 6 6.4866 7.0780 0.0016 13 6 7.4519 6.0753 -0.0026 14 16 9.1623 6.4983 -0.0023 15 6 9.4927 6.4384 -1.7320 16 1 8.6865 6.2682 -2.4302 17 6 10.7884 6.6099 -2.1971 18 7 11.7709 6.8179 -1.3463 19 14 11.1385 6.5470 -4.0310 20 1 10.3663 7.6125 -4.7191 21 1 12.5898 6.7568 -4.2653 22 1 10.7377 5.2211 -4.5662 23 6 7.0661 4.7413 -0.0013 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9564 0.7805 -0.8892 28 1 3.9558 0.7809 0.8909 29 1 3.3138 3.3829 -0.0013 30 1 3.7009 5.1761 -0.0031 31 1 4.3996 7.5328 -0.0067 32 1 6.7878 8.1152 0.0050 33 1 12.6769 6.9375 -1.6715 34 1 7.8128 3.9610 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175981286.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:08 Heat of formation + Delta-G solvation = -95.312825 kcal Electronic energy + Delta-G solvation = -19933.483317 eV Core-core repulsion = 16536.824913 eV Total energy + Delta-G solvation = -3396.658404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.07840 -39.88701 -37.90591 -37.06239 -34.76001 -32.50601 -31.29727 -30.56570 -29.29161 -27.16606 -25.56634 -23.58085 -22.30928 -21.47061 -20.58611 -18.81792 -17.82563 -17.59358 -17.15441 -16.69804 -16.11530 -15.48189 -15.33840 -15.02827 -14.84530 -14.30150 -14.00699 -13.89632 -13.53726 -13.37103 -13.01061 -12.87949 -12.51868 -12.24283 -11.65793 -11.31676 -11.17061 -11.15343 -11.07642 -11.05943 -10.71205 -10.06244 -9.88068 -9.43283 -9.15297 -9.02942 -8.61729 -8.03692 -6.71463 -6.28244 -4.02410 1.12077 1.64379 1.65773 1.97892 2.95709 3.07161 3.21235 3.23689 3.27007 3.46116 4.07242 4.19580 4.25373 4.64555 4.72197 4.75139 4.90859 5.02364 5.06694 5.07957 5.12915 5.23893 5.47503 5.71712 5.78313 5.85725 5.96093 6.06256 6.24188 6.55740 6.63390 6.91346 7.14819 7.16939 7.34062 7.57591 8.12570 8.32697 9.17448 10.78416 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.024965 B = 0.003044 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.309836 B = 9195.240129 C = 9658.790266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.461 3.539 4 O -0.504 6.504 5 C 0.129 3.871 6 N -0.728 5.728 7 C 0.571 3.429 8 O -0.530 6.530 9 C -0.155 4.155 10 C -0.088 4.088 11 C -0.141 4.141 12 C -0.053 4.053 13 C -0.108 4.108 14 S -0.034 6.034 15 C -0.521 4.521 16 H 0.075 0.925 17 C 0.074 3.926 18 N -0.870 5.870 19 Si 0.921 3.079 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.273 1.273 23 C -0.016 4.016 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.411 0.589 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.270 0.730 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.053 -9.277 3.045 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.303 3.697 4 O -0.391 6.391 5 C 0.004 3.996 6 N -0.387 5.387 7 C 0.360 3.640 8 O -0.407 6.407 9 C -0.160 4.160 10 C -0.107 4.107 11 C -0.160 4.160 12 C -0.074 4.074 13 C -0.218 4.218 14 S 0.201 5.799 15 C -0.668 4.668 16 H 0.093 0.907 17 C -0.135 4.135 18 N -0.505 5.505 19 Si 0.747 3.253 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.198 1.198 23 C -0.038 4.038 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.123 0.877 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.250 0.750 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.080 0.920 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.721 -9.347 3.944 22.177 hybrid contribution -1.301 -0.002 -2.145 2.509 sum -21.022 -9.349 1.798 23.077 Atomic orbital electron populations 1.23346 0.75508 1.04084 1.02847 1.86490 1.24005 1.32554 1.83858 1.23630 0.91966 0.81790 0.72301 1.90681 1.66852 1.36299 1.45312 1.20602 0.86549 0.85801 1.06692 1.45692 1.08404 1.06878 1.77681 1.18382 0.81058 0.89275 0.75269 1.90795 1.51240 1.49561 1.49065 1.19726 0.94949 0.91258 1.10079 1.21191 0.97988 0.92968 0.98545 1.21071 0.96244 0.95791 1.02929 1.21985 0.92012 0.99879 0.93500 1.22854 1.03287 0.94184 1.01515 1.83609 0.94863 1.89015 1.12424 1.22797 0.96445 1.57344 0.90213 0.90652 1.25001 0.94932 0.94381 0.99232 1.69974 1.00556 1.45530 1.34490 0.86177 0.77369 0.79001 0.82776 1.19831 1.20737 1.19779 1.21951 0.93963 0.96673 0.91214 0.91609 0.91601 0.87701 0.86747 0.86729 0.75029 0.86324 0.85751 0.84993 0.91990 0.84174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.56 101.05 1.07 1.26 16 2 O -0.35 -2.85 10.57 -39.27 -0.41 -3.26 16 3 C 0.46 4.31 8.03 36.00 0.29 4.60 16 4 O -0.50 -5.79 15.42 -18.75 -0.29 -6.08 16 5 C 0.13 1.22 6.27 -5.20 -0.03 1.18 16 6 N -0.73 -8.64 5.48 -62.43 -0.34 -8.98 16 7 C 0.57 8.98 7.77 -12.32 -0.10 8.89 16 8 O -0.53 -9.94 16.34 5.32 0.09 -9.85 16 9 C -0.16 -2.60 5.87 -105.00 -0.62 -3.22 16 10 C -0.09 -1.23 9.54 -39.12 -0.37 -1.61 16 11 C -0.14 -2.04 10.02 -39.67 -0.40 -2.43 16 12 C -0.05 -0.94 9.79 -39.25 -0.38 -1.32 16 13 C -0.11 -2.29 5.45 -39.00 -0.21 -2.50 16 14 S -0.03 -0.86 21.40 -107.50 -2.30 -3.17 16 15 C -0.52 -14.65 9.46 30.92 0.29 -14.36 16 16 H 0.08 2.10 7.79 -52.49 -0.41 1.69 16 17 C 0.07 2.06 5.49 -17.46 -0.10 1.97 16 18 N -0.87 -25.41 13.22 55.49 0.73 -24.68 16 19 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 C -0.02 -0.33 9.34 -38.92 -0.36 -0.69 16 24 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 25 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 26 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.41 4.44 5.47 -40.82 -0.22 4.21 16 30 H 0.12 1.27 6.40 -52.49 -0.34 0.94 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.14 3.02 7.65 -52.49 -0.40 2.62 16 LS Contribution 323.32 15.07 4.87 4.87 Total: -1.00 -33.49 323.32 -7.06 -40.56 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -3.46 Total: 2.44 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -0.92 Total: -8.24 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.39 Total: -33.66 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.62 Total: -19.20 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.30 Total: -3.17 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.49 -7.06 -40.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175981286.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.754 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds