Wall clock time and date at job start Tue Mar 31 2020 06:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34233 * 117.00291 * 2 1 4 4 O 1.20827 * 119.99707 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00093 * 179.97438 * 3 2 1 6 6 N 1.46492 * 109.47008 * 179.97438 * 5 3 2 7 7 C 1.34784 * 120.00217 * 180.02562 * 6 5 3 8 8 O 1.21552 * 119.99611 * 359.97438 * 7 6 5 9 9 C 1.47865 * 120.00304 * 179.97438 * 7 6 5 10 10 C 1.39665 * 120.09843 * 359.97438 * 9 7 6 11 11 C 1.38047 * 120.03832 * 180.02562 * 10 9 7 12 12 C 1.38176 * 120.23812 * 359.67600 * 11 10 9 13 13 C 1.39179 * 120.20540 * 0.60009 * 12 11 10 14 14 S 1.76194 * 120.02163 * 179.69520 * 13 12 11 15 15 C 1.76196 * 100.00182 * 265.25136 * 14 13 12 16 16 H 1.08000 * 120.00393 * 5.12593 * 15 14 13 17 17 C 1.38736 * 120.00006 * 185.12109 * 15 14 13 18 18 N 1.31616 * 119.99932 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99686 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47076 * 59.99906 * 19 17 15 21 21 H 1.48496 * 109.46794 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46962 * 299.99839 * 19 17 15 23 23 C 1.38875 * 119.95687 * 359.42658 * 13 12 11 24 24 H 1.08998 * 109.47210 * 300.00661 * 1 2 3 25 25 H 1.09000 * 109.46646 * 60.00329 * 1 2 3 26 26 H 1.09000 * 109.46926 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46791 * 59.99885 * 5 3 2 28 28 H 1.09002 * 109.47038 * 299.99811 * 5 3 2 29 29 H 0.96996 * 120.00373 * 359.97438 * 6 5 3 30 30 H 1.08002 * 119.98607 * 0.02562 * 10 9 7 31 31 H 1.07993 * 119.87788 * 179.97438 * 11 10 9 32 32 H 1.08004 * 119.89897 * 180.29644 * 12 11 10 33 33 H 0.97004 * 119.99833 * 179.97438 * 18 17 15 34 34 H 1.08000 * 120.12505 * 180.25503 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 5.2922 2.9949 -0.0003 8 8 6.1293 2.1136 0.0006 9 6 5.7115 4.4129 -0.0016 10 6 4.7514 5.4272 -0.0033 11 6 5.1442 6.7506 -0.0050 12 6 6.4866 7.0780 0.0016 13 6 7.4519 6.0753 -0.0026 14 16 9.1623 6.4983 -0.0023 15 6 9.4927 6.4384 -1.7320 16 1 8.6865 6.2682 -2.4302 17 6 10.7884 6.6099 -2.1971 18 7 11.7709 6.8179 -1.3463 19 14 11.1385 6.5470 -4.0310 20 1 10.3663 7.6125 -4.7191 21 1 12.5898 6.7568 -4.2653 22 1 10.7377 5.2211 -4.5662 23 6 7.0661 4.7413 -0.0013 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9564 0.7805 -0.8892 28 1 3.9558 0.7809 0.8909 29 1 3.3138 3.3829 -0.0013 30 1 3.7009 5.1761 -0.0031 31 1 4.3996 7.5328 -0.0067 32 1 6.7878 8.1152 0.0050 33 1 12.6769 6.9375 -1.6715 34 1 7.8128 3.9610 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175981286.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:07 Heat of formation + Delta-G solvation = -117.754697 kcal Electronic energy + Delta-G solvation = -19934.456470 eV Core-core repulsion = 16536.824913 eV Total energy + Delta-G solvation = -3397.631557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.87660 -41.04893 -39.20782 -37.80077 -35.82825 -34.64453 -32.56455 -31.93594 -30.10327 -27.84084 -27.72030 -24.81500 -23.65179 -22.27706 -21.76812 -20.19101 -19.35940 -18.56758 -17.84303 -17.75485 -17.30042 -16.92279 -16.73632 -16.35029 -16.31472 -15.64864 -15.20998 -14.82948 -14.75969 -14.60161 -14.24292 -13.93195 -13.61343 -13.24184 -13.09374 -12.98622 -12.95258 -12.67066 -12.39217 -11.88601 -11.82655 -11.75591 -11.32725 -11.19190 -10.77331 -10.48774 -9.94989 -9.71111 -8.79899 -8.38280 -6.18352 -0.22140 0.24517 0.92828 1.22727 1.30700 1.39765 1.45836 1.63815 1.74405 2.15407 2.25472 2.77538 2.94819 3.42267 3.47711 3.66403 3.93207 4.00892 4.16185 4.25748 4.29261 4.34382 4.36407 4.46662 4.65615 4.71838 4.91360 5.00445 5.19253 5.20637 5.31730 5.39162 5.49272 5.83669 6.16529 6.25462 6.47609 6.96360 7.02027 8.68553 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.024965 B = 0.003044 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.309836 B = 9195.240129 C = 9658.790266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.470 3.530 4 O -0.526 6.526 5 C 0.124 3.876 6 N -0.710 5.710 7 C 0.573 3.427 8 O -0.568 6.568 9 C -0.157 4.157 10 C -0.064 4.064 11 C -0.121 4.121 12 C -0.060 4.060 13 C -0.129 4.129 14 S -0.092 6.092 15 C -0.537 4.537 16 H 0.068 0.932 17 C 0.020 3.980 18 N -0.906 5.906 19 Si 0.991 3.009 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.269 1.269 23 C -0.040 4.040 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.133 0.867 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.419 0.581 30 H 0.166 0.834 31 H 0.174 0.826 32 H 0.136 0.864 33 H 0.274 0.726 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.529 -9.495 2.145 26.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C 0.314 3.686 4 O -0.415 6.415 5 C 0.000 4.000 6 N -0.367 5.367 7 C 0.362 3.638 8 O -0.448 6.448 9 C -0.162 4.162 10 C -0.083 4.083 11 C -0.141 4.141 12 C -0.081 4.081 13 C -0.240 4.240 14 S 0.142 5.858 15 C -0.684 4.684 16 H 0.086 0.914 17 C -0.185 4.185 18 N -0.542 5.542 19 Si 0.813 3.187 20 H -0.186 1.186 21 H -0.196 1.196 22 H -0.194 1.194 23 C -0.061 4.061 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.151 0.849 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.259 0.741 30 H 0.183 0.817 31 H 0.191 0.809 32 H 0.154 0.846 33 H 0.083 0.917 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -23.251 -9.574 3.057 25.330 hybrid contribution -0.459 -0.011 -1.785 1.843 sum -23.710 -9.585 1.272 25.606 Atomic orbital electron populations 1.23644 0.73829 1.06043 1.02936 1.86482 1.25595 1.31648 1.83348 1.23432 0.91611 0.81883 0.71680 1.90671 1.67246 1.37004 1.46594 1.20769 0.87104 0.84303 1.07828 1.45478 1.07001 1.08431 1.75780 1.18201 0.81958 0.88434 0.75203 1.90784 1.52568 1.50334 1.51098 1.19835 0.93901 0.92936 1.09544 1.21691 0.99544 0.91989 0.95073 1.21530 0.95265 0.97242 1.00033 1.22088 0.93126 0.99262 0.93586 1.22508 1.00505 0.95586 1.05443 1.83495 1.00486 1.89606 1.12194 1.23038 0.96743 1.57438 0.91183 0.91391 1.26002 0.94563 0.93703 1.04277 1.70099 1.00996 1.46414 1.36714 0.85107 0.77732 0.79221 0.76643 1.18612 1.19612 1.19449 1.21645 0.95340 0.95497 0.93658 0.91482 0.91572 0.84915 0.85803 0.85539 0.74062 0.81678 0.80885 0.84583 0.91690 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.43 16 2 O -0.36 -4.84 10.57 -51.44 -0.54 -5.39 16 3 C 0.47 7.62 8.03 71.23 0.57 8.19 16 4 O -0.53 -10.61 15.42 21.96 0.34 -10.27 16 5 C 0.12 2.07 6.27 85.63 0.54 2.61 16 6 N -0.71 -15.02 5.48 -469.69 -2.57 -17.59 16 7 C 0.57 17.40 7.77 86.79 0.67 18.07 16 8 O -0.57 -21.53 16.34 -3.88 -0.06 -21.60 16 9 C -0.16 -5.09 5.87 -20.11 -0.12 -5.21 16 10 C -0.06 -1.55 9.54 22.57 0.22 -1.34 16 11 C -0.12 -3.03 10.02 22.21 0.22 -2.80 16 12 C -0.06 -2.07 9.79 22.48 0.22 -1.85 16 13 C -0.13 -5.67 5.45 22.65 0.12 -5.55 16 14 S -0.09 -5.04 21.40 -56.49 -1.21 -6.25 16 15 C -0.54 -31.44 9.46 67.94 0.64 -30.80 16 16 H 0.07 3.93 7.79 -2.91 -0.02 3.90 16 17 C 0.02 1.14 5.49 84.84 0.47 1.61 16 18 N -0.91 -54.65 13.22 21.64 0.29 -54.36 16 19 Si 0.99 44.56 29.55 68.60 2.03 46.58 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 C -0.04 -1.65 9.34 22.70 0.21 -1.44 16 24 H 0.07 0.55 8.13 -2.39 -0.02 0.53 16 25 H 0.07 0.56 8.13 -2.39 -0.02 0.54 16 26 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.12 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.42 7.44 5.47 -92.71 -0.51 6.94 16 30 H 0.17 2.51 6.40 -2.91 -0.02 2.49 16 31 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.14 4.53 8.06 -2.91 -0.02 4.50 16 33 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.11 5.11 7.65 -2.91 -0.02 5.09 16 Total: -1.00 -77.01 323.32 3.86 -73.14 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.64 Total: 12.81 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 4.96 Total: -17.09 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -2.29 Total: -71.95 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.27 Total: -37.25 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -5.04 SS G_CDS: -1.21 Total: -6.25 kcal Total: -77.01 3.86 -73.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175981286.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.610 kcal (2) G-P(sol) polarization free energy of solvation -77.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds