Wall clock time and date at job start Tue Mar 31 2020 07:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99984 * 2 1 4 4 H 1.48497 * 109.47119 * 269.99820 * 3 2 1 5 5 H 1.48500 * 109.46944 * 29.99893 * 3 2 1 6 6 H 1.48507 * 109.47204 * 150.00003 * 3 2 1 7 7 C 1.37882 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00430 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99449 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47057 * 180.02562 * 9 7 2 11 11 C 1.46502 * 120.00133 * 307.46135 * 10 9 7 12 12 C 1.53000 * 109.46739 * 275.17174 * 11 10 9 13 13 F 1.39897 * 109.47589 * 59.99990 * 12 11 10 14 14 F 1.39910 * 109.46745 * 179.97438 * 12 11 10 15 15 F 1.39899 * 109.47304 * 299.99298 * 12 11 10 16 16 C 1.34773 * 120.00271 * 127.45560 * 10 9 7 17 17 O 1.21737 * 120.00335 * 176.52666 * 16 10 9 18 18 C 1.46378 * 119.99938 * 356.81435 * 16 10 9 19 19 C 1.33982 * 119.22942 * 314.86896 * 18 16 10 20 20 O 1.35005 * 121.68842 * 180.36570 * 19 18 16 21 21 C 1.43248 * 116.76461 * 342.83059 * 20 19 18 22 22 C 1.53547 * 108.08912 * 45.47827 * 21 20 19 23 23 O 1.36212 * 119.23633 * 134.60175 * 18 16 10 24 24 H 0.96994 * 119.99834 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47205 * 60.00072 * 9 7 2 26 26 H 1.08998 * 109.47112 * 300.00188 * 9 7 2 27 27 H 1.09007 * 109.47051 * 35.16456 * 11 10 9 28 28 H 1.08999 * 109.47256 * 155.16495 * 11 10 9 29 29 H 1.07999 * 119.15709 * 0.35504 * 19 18 16 30 30 H 1.09001 * 109.73961 * 165.13522 * 21 20 19 31 31 H 1.09007 * 109.73262 * 285.83149 * 21 20 19 32 32 H 1.09000 * 109.75447 * 61.48020 * 22 21 20 33 33 H 1.09003 * 109.75105 * 182.21898 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 3.2664 -3.6685 -1.0045 12 6 2.7273 -4.3181 -2.2805 13 9 1.6584 -3.5619 -2.7731 14 9 3.7426 -4.3708 -3.2417 15 9 2.2881 -5.6150 -1.9939 16 6 2.1008 -4.5857 0.9286 17 8 2.8518 -5.5431 0.8916 18 6 1.0825 -4.4946 1.9762 19 6 0.9037 -3.3306 2.6153 20 8 -0.0159 -3.1929 3.5941 21 6 -1.0355 -4.1965 3.6671 22 6 -0.3634 -5.5700 3.5275 23 8 0.3349 -5.5934 2.2748 24 1 -0.4849 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 3.6086 -2.6579 -1.2279 28 1 4.0993 -4.2576 -0.6206 29 1 1.5110 -2.4808 2.3406 30 1 -1.5468 -4.1326 4.6276 31 1 -1.7516 -4.0531 2.8578 32 1 0.3383 -5.7219 4.3477 33 1 -1.1209 -6.3537 3.5400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177620457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:59 Heat of formation + Delta-G solvation = -230.859360 kcal Electronic energy + Delta-G solvation = -25334.058576 eV Core-core repulsion = 20946.912821 eV Total energy + Delta-G solvation = -4387.145755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.54441 -47.10967 -46.97123 -40.82153 -39.00013 -36.70009 -35.37442 -32.78670 -32.10192 -29.69526 -28.08791 -27.24689 -25.01500 -23.32120 -22.96826 -20.66560 -19.24929 -18.08108 -18.03906 -17.88922 -17.47195 -16.97335 -16.13580 -16.07226 -15.66944 -14.97991 -14.59102 -14.46134 -13.99868 -13.94476 -13.90411 -13.76485 -13.61479 -13.47305 -13.17669 -13.15800 -13.04742 -12.48778 -12.01021 -11.82807 -11.63318 -11.41645 -11.11336 -10.95049 -10.76390 -10.44069 -10.29426 -9.87546 -9.48182 -8.75710 -8.15551 -7.60409 -6.31968 -4.41109 1.88401 2.77875 3.16789 3.24676 3.25408 3.28766 3.51808 3.56091 3.99323 4.22285 4.38157 4.48932 4.58063 4.81695 4.98106 5.03126 5.04398 5.17034 5.44876 5.50192 5.62004 5.66705 5.81580 6.36006 6.42699 6.98879 7.10976 7.18658 7.52432 7.69071 7.81078 8.03179 8.50381 8.68204 9.27026 10.75781 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.010341 B = 0.008974 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.914062 B = 3119.508234 C = 5273.830367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.071 3.929 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.552 4.552 8 H 0.067 0.933 9 C 0.211 3.789 10 N -0.585 5.585 11 C 0.084 3.916 12 C 0.432 3.568 13 F -0.174 7.174 14 F -0.190 7.190 15 F -0.182 7.182 16 C 0.583 3.417 17 O -0.540 6.540 18 C -0.091 4.091 19 C 0.030 3.970 20 O -0.298 6.298 21 C 0.012 3.988 22 C 0.021 3.979 23 O -0.293 6.293 24 H 0.268 0.732 25 H 0.039 0.961 26 H 0.064 0.936 27 H 0.134 0.866 28 H 0.117 0.883 29 H 0.203 0.797 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 -5.897 3.712 6.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.134 4.134 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.590 4.590 8 H 0.085 0.915 9 C 0.092 3.908 10 N -0.317 5.317 11 C -0.042 4.042 12 C 0.377 3.623 13 F -0.156 7.156 14 F -0.172 7.172 15 F -0.164 7.164 16 C 0.372 3.628 17 O -0.419 6.419 18 C -0.139 4.139 19 C -0.036 4.036 20 O -0.210 6.210 21 C -0.064 4.064 22 C -0.056 4.056 23 O -0.207 6.207 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.151 0.849 28 H 0.135 0.865 29 H 0.219 0.781 30 H 0.134 0.866 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.203 -6.301 3.717 7.318 hybrid contribution 0.027 0.849 -0.257 0.887 sum 0.230 -5.452 3.459 6.461 Atomic orbital electron populations 1.69922 1.06080 1.27675 1.47996 1.24921 0.94864 0.99390 0.94197 0.86470 0.79814 0.82656 0.78432 1.20337 1.20948 1.19588 1.21272 0.93560 0.90007 1.54150 0.91491 1.20184 0.88020 0.82136 1.00414 1.47898 1.31214 1.25499 1.27097 1.22445 0.92030 1.04840 0.84924 1.21470 0.76329 0.77271 0.87267 1.93218 1.57457 1.75642 1.89273 1.93136 1.60464 1.96450 1.67171 1.93191 1.90063 1.39703 1.93433 1.17184 0.82821 0.82105 0.80710 1.90776 1.44520 1.31989 1.74605 1.20018 1.01773 0.87071 1.05019 1.23718 0.92833 0.96494 0.90532 1.86137 1.37311 1.48114 1.49436 1.23680 0.90045 0.87959 1.04701 1.23589 0.97046 0.98572 0.86354 1.86395 1.60371 1.37050 1.36908 0.92217 0.94344 0.91865 0.84852 0.86533 0.78112 0.86641 0.90088 0.90880 0.86622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.12 13.29 55.43 0.74 -22.39 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 19.32 29.54 -169.99 -5.02 14.30 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.55 -13.15 8.26 -34.44 -0.28 -13.43 16 8 H 0.07 1.53 6.73 -52.49 -0.35 1.18 16 9 C 0.21 4.80 4.48 -5.19 -0.02 4.77 16 10 N -0.59 -12.05 2.59 -176.71 -0.46 -12.51 16 11 C 0.08 1.52 5.29 -4.04 -0.02 1.49 16 12 C 0.43 7.96 3.29 37.16 0.12 8.08 16 13 F -0.17 -3.51 15.86 2.25 0.04 -3.48 16 14 F -0.19 -3.19 17.32 2.25 0.04 -3.15 16 15 F -0.18 -3.62 16.77 2.25 0.04 -3.59 16 16 C 0.58 12.39 7.07 -12.99 -0.09 12.30 16 17 O -0.54 -12.37 16.41 0.14 0.00 -12.37 16 18 C -0.09 -1.79 5.91 -37.80 -0.22 -2.01 16 19 C 0.03 0.55 8.25 29.24 0.24 0.80 16 20 O -0.30 -5.02 10.47 -30.84 -0.32 -5.34 16 21 C 0.01 0.15 7.29 37.44 0.27 0.42 16 22 C 0.02 0.26 7.32 37.44 0.27 0.54 16 23 O -0.29 -5.38 10.49 -41.22 -0.43 -5.81 16 24 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 25 H 0.04 0.97 7.06 -51.93 -0.37 0.60 16 26 H 0.06 1.47 3.94 -51.93 -0.20 1.26 16 27 H 0.13 2.27 6.43 -51.92 -0.33 1.94 16 28 H 0.12 1.94 7.32 -51.93 -0.38 1.56 16 29 H 0.20 3.97 6.30 -52.49 -0.33 3.64 16 30 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.12 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 295.32 15.07 4.45 4.45 Total: -1.00 -29.46 295.32 -3.56 -33.02 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -2.79 Total: 2.24 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 0.17 Total: 14.62 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.28 Total: -34.89 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.75 Total: -23.53 kcal Atomic # 9 Polarization: -10.32 SS G_CDS: 0.11 Total: -10.21 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.46 -3.56 -33.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177620457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.840 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds