Wall clock time and date at job start Tue Mar 31 2020 07:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99984 * 2 1 4 4 H 1.48497 * 109.47119 * 269.99820 * 3 2 1 5 5 H 1.48500 * 109.46944 * 29.99893 * 3 2 1 6 6 H 1.48507 * 109.47204 * 150.00003 * 3 2 1 7 7 C 1.37882 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00430 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99449 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47057 * 180.02562 * 9 7 2 11 11 C 1.46502 * 120.00133 * 307.46135 * 10 9 7 12 12 C 1.53000 * 109.46739 * 275.17174 * 11 10 9 13 13 F 1.39897 * 109.47589 * 59.99990 * 12 11 10 14 14 F 1.39910 * 109.46745 * 179.97438 * 12 11 10 15 15 F 1.39899 * 109.47304 * 299.99298 * 12 11 10 16 16 C 1.34773 * 120.00271 * 127.45560 * 10 9 7 17 17 O 1.21737 * 120.00335 * 176.52666 * 16 10 9 18 18 C 1.46378 * 119.99938 * 356.81435 * 16 10 9 19 19 C 1.33982 * 119.22942 * 314.86896 * 18 16 10 20 20 O 1.35005 * 121.68842 * 180.36570 * 19 18 16 21 21 C 1.43248 * 116.76461 * 342.83059 * 20 19 18 22 22 C 1.53547 * 108.08912 * 45.47827 * 21 20 19 23 23 O 1.36212 * 119.23633 * 134.60175 * 18 16 10 24 24 H 0.96994 * 119.99834 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47205 * 60.00072 * 9 7 2 26 26 H 1.08998 * 109.47112 * 300.00188 * 9 7 2 27 27 H 1.09007 * 109.47051 * 35.16456 * 11 10 9 28 28 H 1.08999 * 109.47256 * 155.16495 * 11 10 9 29 29 H 1.07999 * 119.15709 * 0.35504 * 19 18 16 30 30 H 1.09001 * 109.73961 * 165.13522 * 21 20 19 31 31 H 1.09007 * 109.73262 * 285.83149 * 21 20 19 32 32 H 1.09000 * 109.75447 * 61.48020 * 22 21 20 33 33 H 1.09003 * 109.75105 * 182.21898 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 3.2664 -3.6685 -1.0045 12 6 2.7273 -4.3181 -2.2805 13 9 1.6584 -3.5619 -2.7731 14 9 3.7426 -4.3708 -3.2417 15 9 2.2881 -5.6150 -1.9939 16 6 2.1008 -4.5857 0.9286 17 8 2.8518 -5.5431 0.8916 18 6 1.0825 -4.4946 1.9762 19 6 0.9037 -3.3306 2.6153 20 8 -0.0159 -3.1929 3.5941 21 6 -1.0355 -4.1965 3.6671 22 6 -0.3634 -5.5700 3.5275 23 8 0.3349 -5.5934 2.2748 24 1 -0.4849 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 3.6086 -2.6579 -1.2279 28 1 4.0993 -4.2576 -0.6206 29 1 1.5110 -2.4808 2.3406 30 1 -1.5468 -4.1326 4.6276 31 1 -1.7516 -4.0531 2.8578 32 1 0.3383 -5.7219 4.3477 33 1 -1.1209 -6.3537 3.5400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177620457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:59 Heat of formation + Delta-G solvation = -249.517794 kcal Electronic energy + Delta-G solvation = -25334.867666 eV Core-core repulsion = 20946.912821 eV Total energy + Delta-G solvation = -4387.954845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.05932 -48.58437 -48.54238 -42.18653 -40.56071 -38.04047 -37.06185 -34.62942 -33.46173 -31.05253 -29.63218 -28.90826 -26.30842 -25.03928 -24.52183 -22.09723 -20.65172 -19.58285 -19.50349 -19.25945 -19.11054 -18.53971 -17.84260 -17.48003 -17.13725 -16.51108 -16.16740 -15.76502 -15.47510 -15.44783 -15.40326 -15.16278 -15.08688 -14.97980 -14.71352 -14.69764 -14.51556 -14.26780 -13.44471 -13.22253 -13.17302 -13.01060 -12.82806 -12.62016 -12.13004 -11.94414 -11.67740 -11.62077 -11.07618 -10.63368 -9.87255 -9.05798 -8.21287 -6.35236 0.38377 1.28814 1.48045 1.50759 1.58938 1.80313 1.99135 2.28156 2.42272 2.61550 2.88589 3.08487 3.14071 3.32532 3.46828 3.65151 4.02229 4.05771 4.14068 4.27668 4.37206 4.48245 4.65453 4.73014 4.93786 5.22263 5.35622 5.64069 5.80071 5.94948 6.27941 6.37368 6.72373 6.94815 7.36243 8.86933 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.010341 B = 0.008974 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.914062 B = 3119.508234 C = 5273.830367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.960 3.040 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.552 4.552 8 H 0.077 0.923 9 C 0.225 3.775 10 N -0.586 5.586 11 C 0.081 3.919 12 C 0.436 3.564 13 F -0.186 7.186 14 F -0.178 7.178 15 F -0.191 7.191 16 C 0.580 3.420 17 O -0.562 6.562 18 C -0.105 4.105 19 C 0.041 3.959 20 O -0.308 6.308 21 C 0.006 3.994 22 C 0.015 3.985 23 O -0.317 6.317 24 H 0.268 0.732 25 H 0.011 0.989 26 H 0.060 0.940 27 H 0.145 0.855 28 H 0.133 0.867 29 H 0.187 0.813 30 H 0.161 0.839 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.332 -5.766 4.634 7.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.175 4.175 3 Si 0.785 3.215 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.590 4.590 8 H 0.095 0.905 9 C 0.106 3.894 10 N -0.317 5.317 11 C -0.045 4.045 12 C 0.380 3.620 13 F -0.168 7.168 14 F -0.159 7.159 15 F -0.173 7.173 16 C 0.369 3.631 17 O -0.442 6.442 18 C -0.153 4.153 19 C -0.025 4.025 20 O -0.221 6.221 21 C -0.068 4.068 22 C -0.060 4.060 23 O -0.233 6.233 24 H 0.077 0.923 25 H 0.029 0.971 26 H 0.077 0.923 27 H 0.163 0.837 28 H 0.151 0.849 29 H 0.204 0.796 30 H 0.178 0.822 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.471 -6.181 4.641 7.743 hybrid contribution -0.118 0.735 -0.501 0.897 sum 0.353 -5.446 4.140 6.850 Atomic orbital electron populations 1.70032 1.07494 1.28327 1.49431 1.25651 0.95469 1.02420 0.94002 0.85521 0.78876 0.78857 0.78255 1.20295 1.21228 1.18548 1.21541 0.94092 0.90314 1.53072 0.90515 1.19861 0.88060 0.82627 0.98850 1.47845 1.31353 1.24870 1.27616 1.22654 0.91734 1.05833 0.84257 1.21457 0.76156 0.76732 0.87606 1.93198 1.58218 1.75922 1.89452 1.93159 1.59718 1.96358 1.66691 1.93174 1.90233 1.40361 1.93540 1.17493 0.82942 0.81668 0.80973 1.90747 1.45431 1.32645 1.75390 1.19849 1.02291 0.87992 1.05180 1.23417 0.92946 0.95564 0.90573 1.86107 1.37623 1.49886 1.48437 1.24080 0.88877 0.86855 1.07013 1.24026 0.97696 0.99763 0.84518 1.86340 1.60574 1.36675 1.39684 0.92304 0.97108 0.92266 0.83712 0.84881 0.79634 0.82192 0.90529 0.89776 0.82870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.31 13.29 21.45 0.28 -48.03 16 2 C 0.03 1.29 5.46 84.66 0.46 1.75 16 3 Si 0.96 39.02 29.54 68.60 2.03 41.05 16 4 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.29 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 7 C -0.55 -26.09 8.26 25.60 0.21 -25.87 16 8 H 0.08 3.41 6.73 -2.92 -0.02 3.39 16 9 C 0.23 10.36 4.48 85.64 0.38 10.74 16 10 N -0.59 -24.12 2.59 -831.19 -2.15 -26.27 16 11 C 0.08 2.85 5.29 86.38 0.46 3.31 16 12 C 0.44 15.83 3.29 71.98 0.24 16.06 16 13 F -0.19 -7.52 15.86 44.97 0.71 -6.81 16 14 F -0.18 -5.73 17.32 44.97 0.78 -4.95 16 15 F -0.19 -7.57 16.77 44.97 0.75 -6.82 16 16 C 0.58 24.67 7.07 86.36 0.61 25.28 16 17 O -0.56 -25.68 16.41 0.33 0.01 -25.68 16 18 C -0.11 -4.13 5.91 23.42 0.14 -3.99 16 19 C 0.04 1.54 8.25 66.85 0.55 2.09 16 20 O -0.31 -10.02 10.47 -69.28 -0.73 -10.75 16 21 C 0.01 0.14 7.29 72.17 0.53 0.67 16 22 C 0.01 0.34 7.32 72.17 0.53 0.87 16 23 O -0.32 -11.41 10.49 -76.08 -0.80 -12.21 16 24 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 25 H 0.01 0.56 7.06 -2.39 -0.02 0.55 16 26 H 0.06 2.80 3.94 -2.39 -0.01 2.79 16 27 H 0.15 4.76 6.43 -2.38 -0.02 4.75 16 28 H 0.13 4.27 7.32 -2.39 -0.02 4.26 16 29 H 0.19 7.42 6.30 -2.91 -0.02 7.40 16 30 H 0.16 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.15 2.32 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -62.68 295.32 6.17 -56.50 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.18 Total: 13.05 kcal Atomic # 6 Polarization: 26.81 SS G_CDS: 4.11 Total: 30.91 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -1.86 Total: -74.30 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -1.52 Total: -48.64 kcal Atomic # 9 Polarization: -20.82 SS G_CDS: 2.25 Total: -18.57 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -62.68 6.17 -56.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177620457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.014 kcal (2) G-P(sol) polarization free energy of solvation -62.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds