Wall clock time and date at job start Tue Mar 31 2020 07:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47198 * 2 1 4 4 H 1.08999 * 109.47254 * 54.99753 * 3 2 1 5 5 C 1.50700 * 109.47150 * 174.99681 * 3 2 1 6 6 H 1.08005 * 119.99682 * 120.00120 * 5 3 2 7 7 C 1.37873 * 119.99990 * 299.99718 * 5 3 2 8 8 N 1.31508 * 120.00443 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00003 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46781 * 60.00348 * 9 7 5 11 11 H 1.48495 * 109.47096 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47297 * 300.00861 * 9 7 5 13 13 N 1.46504 * 109.47352 * 294.99838 * 3 2 1 14 14 C 1.34773 * 119.99863 * 85.27286 * 13 3 2 15 15 O 1.21365 * 120.00309 * 359.73076 * 14 13 3 16 16 C 1.49284 * 120.00135 * 179.72490 * 14 13 3 17 17 O 1.21372 * 119.99480 * 354.73388 * 16 14 13 18 18 C 1.47308 * 120.00432 * 174.72579 * 16 14 13 19 19 C 1.39967 * 120.16280 * 186.03129 * 18 16 14 20 20 C 1.37777 * 119.83547 * 179.74349 * 19 18 16 21 21 C 1.38616 * 120.16098 * 0.51048 * 20 19 18 22 22 Cl 1.73599 * 119.83581 * 179.73984 * 21 20 19 23 23 C 1.38616 * 120.32467 * 359.77053 * 21 20 19 24 24 C 1.37773 * 120.16140 * 359.96705 * 23 21 20 25 25 H 1.09003 * 109.46467 * 59.99957 * 1 2 3 26 26 H 1.08998 * 109.47293 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47127 * 300.00340 * 1 2 3 28 28 H 1.09004 * 109.47319 * 239.99885 * 2 1 3 29 29 H 1.08998 * 109.47112 * 119.99746 * 2 1 3 30 30 H 0.96998 * 120.00703 * 179.97438 * 8 7 5 31 31 H 0.96998 * 119.99826 * 265.00228 * 13 3 2 32 32 H 1.08003 * 120.07941 * 0.02562 * 19 18 16 33 33 H 1.08002 * 119.91750 * 180.25293 * 20 19 18 34 34 H 1.08006 * 119.92414 * 179.97438 * 23 21 20 35 35 H 1.08005 * 120.08338 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8800 1.3813 10 1 6.5004 2.2800 1.3810 11 1 6.3977 0.2158 2.6500 12 1 6.5967 0.1453 0.2345 13 7 1.6525 2.0975 -1.2518 14 6 0.4373 2.6692 -1.3651 15 8 -0.3378 2.6372 -0.4318 16 6 0.0447 3.3421 -2.6386 17 8 0.8521 3.4584 -3.5373 18 6 -1.3226 3.8646 -2.8045 19 6 -1.7327 4.3820 -4.0387 20 6 -3.0148 4.8641 -4.1878 21 6 -3.8942 4.8473 -3.1165 22 17 -5.5055 5.4632 -3.3120 23 6 -3.4932 4.3418 -1.8897 24 6 -2.2160 3.8514 -1.7271 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0617 2.9496 31 1 2.2720 2.1231 -1.9978 32 1 -1.0474 4.3991 -4.8732 33 1 -3.3339 5.2599 -5.1407 34 1 -4.1836 4.3323 -1.0592 35 1 -1.9047 3.4582 -0.7706 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183860606.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:11 Heat of formation + Delta-G solvation = -51.118077 kcal Electronic energy + Delta-G solvation = -20863.905807 eV Core-core repulsion = 17467.120125 eV Total energy + Delta-G solvation = -3396.785683 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.54990 -38.89495 -38.07319 -36.67276 -35.34644 -32.53435 -31.31651 -31.16274 -31.03557 -27.39657 -25.61652 -23.36174 -22.96432 -22.12657 -20.07739 -19.56232 -17.89534 -17.32011 -16.40995 -16.15794 -15.47964 -15.28335 -15.10480 -14.55317 -14.39165 -13.96791 -13.79632 -13.48762 -13.33596 -12.78141 -12.37093 -12.12797 -11.89533 -11.66400 -11.62209 -11.38268 -11.28987 -11.05194 -10.89882 -10.83606 -10.39760 -10.28973 -9.73352 -9.26548 -9.18703 -8.97531 -8.88145 -8.59744 -8.08715 -6.20651 -4.30776 0.22258 1.13495 1.69370 1.81569 3.22187 3.23451 3.26378 3.27837 3.33043 3.75797 4.27096 4.55819 4.63125 4.70575 5.00822 5.10759 5.11551 5.17892 5.46578 5.80041 5.91832 6.04455 6.16677 6.28179 6.33005 6.50303 6.58097 6.89625 6.95988 7.11930 7.17554 7.24115 7.49414 7.60872 7.76033 8.04920 8.37696 8.58303 8.82020 9.36260 10.84559 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.034190 B = 0.003218 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.745794 B = 8700.242693 C = 9135.604154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.266 3.734 4 H 0.056 0.944 5 C -0.539 4.539 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.670 5.670 14 C 0.472 3.528 15 O -0.521 6.521 16 C 0.389 3.611 17 O -0.427 6.427 18 C -0.160 4.160 19 C -0.048 4.048 20 C -0.135 4.135 21 C -0.004 4.004 22 Cl -0.070 7.070 23 C -0.132 4.132 24 C -0.050 4.050 25 H 0.036 0.964 26 H 0.026 0.974 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.103 0.897 30 H 0.266 0.734 31 H 0.400 0.600 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.646 6.824 -9.934 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.165 3.835 4 H 0.074 0.926 5 C -0.578 4.578 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.318 5.318 14 C 0.254 3.746 15 O -0.402 6.402 16 C 0.262 3.738 17 O -0.300 6.300 18 C -0.162 4.162 19 C -0.066 4.066 20 C -0.153 4.153 21 C -0.030 4.030 22 Cl -0.041 7.041 23 C -0.150 4.150 24 C -0.067 4.067 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.121 0.879 30 H 0.076 0.924 31 H 0.234 0.766 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -12.843 6.791 -9.564 17.394 hybrid contribution 1.031 0.062 -0.337 1.087 sum -11.812 6.853 -9.901 16.868 Atomic orbital electron populations 1.21859 0.98248 0.98475 1.01083 1.21959 0.92692 0.99360 1.02748 1.19016 0.94758 0.89448 0.80255 0.92633 1.21170 0.90372 1.39615 1.06595 0.91891 1.24862 0.98806 0.94564 0.95231 1.69861 1.35383 1.37263 1.09341 0.86476 0.84545 0.78427 0.77515 1.20093 1.21065 1.20072 1.46608 1.13806 1.52238 1.19167 1.20310 0.84183 0.81599 0.88520 1.90476 1.50313 1.59513 1.39854 1.22909 0.87329 0.76266 0.87308 1.90545 1.52070 1.45789 1.41568 1.20350 0.95399 1.04943 0.95520 1.21378 0.95122 0.93277 0.96833 1.20942 0.93108 1.02768 0.98526 1.21413 0.86588 0.99194 0.95840 1.98378 1.22246 1.85833 1.97678 1.21232 0.97436 1.00252 0.96115 1.22859 0.90895 0.91647 1.01320 0.94540 0.95481 0.92862 0.94742 0.87858 0.92352 0.76631 0.84014 0.84430 0.84221 0.79727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.52 37.16 0.32 -2.55 16 2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.11 16 3 C 0.27 6.34 2.24 -69.08 -0.15 6.19 16 4 H 0.06 1.50 7.57 -51.93 -0.39 1.10 16 5 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 6 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.71 11.29 55.43 0.63 -23.08 16 9 Si 0.90 20.13 29.54 -169.99 -5.02 15.10 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.67 -13.53 5.01 -55.42 -0.28 -13.80 16 14 C 0.47 8.79 6.42 -11.67 -0.07 8.71 16 15 O -0.52 -10.28 10.57 5.48 0.06 -10.23 16 16 C 0.39 6.21 7.17 -31.30 -0.22 5.98 16 17 O -0.43 -7.11 16.50 5.48 0.09 -7.02 16 18 C -0.16 -2.21 5.88 -104.91 -0.62 -2.83 16 19 C -0.05 -0.55 9.60 -39.10 -0.38 -0.92 16 20 C -0.13 -1.37 9.81 -39.61 -0.39 -1.76 16 21 C 0.00 -0.04 6.33 -39.30 -0.25 -0.29 16 22 Cl -0.07 -0.67 28.95 -51.86 -1.50 -2.17 16 23 C -0.13 -1.48 9.81 -39.61 -0.39 -1.87 16 24 C -0.05 -0.66 9.30 -39.10 -0.36 -1.02 16 25 H 0.04 0.72 5.66 -51.93 -0.29 0.42 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 30 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.40 7.52 8.02 -40.82 -0.33 7.20 16 32 H 0.14 1.47 7.67 -52.48 -0.40 1.06 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 35 H 0.19 2.72 4.85 -52.52 -0.25 2.47 16 LS Contribution 313.73 15.07 4.73 4.73 Total: -1.00 -26.71 313.73 -7.98 -34.69 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.62 Total: 7.62 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.06 Total: -5.84 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.35 Total: -36.89 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.15 Total: -17.25 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.71 -7.98 -34.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183860606.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.427 kcal (2) G-P(sol) polarization free energy of solvation -26.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds